FF:51-27F8: Difference between revisions

Latest revision as of 19:18, 4 June 2020

Name:	vesicular gland, adult
Species:	Mouse (Mus musculus)
Library ID:	CNhs10491
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	C57BL/6J
tissue	vesicular gland
dev stage	adult
sex	male
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005950

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10491		CAGE		DRX009131		DRR010005

Accession ID Mm9

Library id		BAM		CTSS
CNhs10491		DRZ001430		DRZ002813

Accession ID Mm10

Library id		BAM		CTSS
CNhs10491		DRZ012780		DRZ014163

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs10491

0	0
1	0
10	0
100	0
1000	0.239
1001	0.0998
1002	-0.0941
1003	0.077
1004	0
1005	-0.0389
1006	-0.143
1007	0.0202
1008	0
1009	-0.0723
101	-0.0628
1010	0
1011	0
1012	0
1013	0.732
1014	-0.0874
1015	-0.235
1016	-0.289
1017	0
1018	0.0102
1019	0
102	0
1020	0
1021	0
1022	0.423
1023	0
1024	-0.0899
1025	0
1026	0
1027	0
1028	0
1029	5.646328e-4
103	-0.0736
1030	0
1031	-0.243
1032	0.211
1033	0
1034	0.187
1035	0
1036	-0.22
1037	1.257
1038	-0.0104
1039	-0.0328
104	0
1040	0.0547
1041	0.7

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10491

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.187
MA0003.1	MA0003.1	0.37
MA0004.1	MA0004.1	0.296
MA0006.1	MA0006.1	0.329
MA0007.1	MA0007.1	3.78033e-4
MA0009.1	MA0009.1	0.852
MA0014.1	MA0014.1	0.315
MA0017.1	MA0017.1	0.647
MA0018.2	MA0018.2	0.00301
MA0019.1	MA0019.1	0.691
MA0024.1	MA0024.1	8.73806e-9
MA0025.1	MA0025.1	0.105
MA0027.1	MA0027.1	0.88
MA0028.1	MA0028.1	0.503
MA0029.1	MA0029.1	0.359
MA0030.1	MA0030.1	0.983
MA0031.1	MA0031.1	0.119
MA0035.2	MA0035.2	0.33
MA0038.1	MA0038.1	0.0271
MA0039.2	MA0039.2	0.431
MA0040.1	MA0040.1	0.957
MA0041.1	MA0041.1	0.237
MA0042.1	MA0042.1	0.473
MA0043.1	MA0043.1	0.124
MA0046.1	MA0046.1	0.0332
MA0047.2	MA0047.2	0.00971
MA0048.1	MA0048.1	0.891
MA0050.1	MA0050.1	6.57953e-4
MA0051.1	MA0051.1	0.00474
MA0052.1	MA0052.1	0.0188
MA0055.1	MA0055.1	0.943
MA0057.1	MA0057.1	0.62
MA0058.1	MA0058.1	0.265
MA0059.1	MA0059.1	0.619
MA0060.1	MA0060.1	7.67211e-7
MA0061.1	MA0061.1	0.548
MA0062.2	MA0062.2	0.906
MA0065.2	MA0065.2	0.733
MA0066.1	MA0066.1	0.794
MA0067.1	MA0067.1	0.227
MA0068.1	MA0068.1	0.617
MA0069.1	MA0069.1	0.559
MA0070.1	MA0070.1	0.75
MA0071.1	MA0071.1	0.145
MA0072.1	MA0072.1	0.581
MA0073.1	MA0073.1	0.988
MA0074.1	MA0074.1	0.254
MA0076.1	MA0076.1	0.136
MA0077.1	MA0077.1	0.0372
MA0078.1	MA0078.1	0.172
MA0079.2	MA0079.2	0.687
MA0080.2	MA0080.2	0.0425
MA0081.1	MA0081.1	0.282
MA0083.1	MA0083.1	0.474
MA0084.1	MA0084.1	0.806
MA0087.1	MA0087.1	0.815
MA0088.1	MA0088.1	0.827
MA0090.1	MA0090.1	0.977
MA0091.1	MA0091.1	0.139
MA0092.1	MA0092.1	0.333
MA0093.1	MA0093.1	0.367
MA0099.2	MA0099.2	0.245
MA0100.1	MA0100.1	0.577
MA0101.1	MA0101.1	0.582
MA0102.2	MA0102.2	0.054
MA0103.1	MA0103.1	8.95768e-5
MA0104.2	MA0104.2	0.894
MA0105.1	MA0105.1	0.457
MA0106.1	MA0106.1	0.316
MA0107.1	MA0107.1	0.67
MA0108.2	MA0108.2	0.0203
MA0111.1	MA0111.1	0.451
MA0112.2	MA0112.2	3.23947e-4
MA0113.1	MA0113.1	0.535
MA0114.1	MA0114.1	0.29
MA0115.1	MA0115.1	0.48
MA0116.1	MA0116.1	0.977
MA0117.1	MA0117.1	0.174
MA0119.1	MA0119.1	0.3
MA0122.1	MA0122.1	0.749
MA0124.1	MA0124.1	0.103
MA0125.1	MA0125.1	0.257
MA0131.1	MA0131.1	0.371
MA0135.1	MA0135.1	0.475
MA0136.1	MA0136.1	0.0783
MA0137.2	MA0137.2	0.0157
MA0138.2	MA0138.2	0.701
MA0139.1	MA0139.1	0.0485
MA0140.1	MA0140.1	0.787
MA0141.1	MA0141.1	0.802
MA0142.1	MA0142.1	0.913
MA0143.1	MA0143.1	0.165
MA0144.1	MA0144.1	1.36505e-4
MA0145.1	MA0145.1	0.0355
MA0146.1	MA0146.1	0.278
MA0147.1	MA0147.1	0.819
MA0148.1	MA0148.1	0.0429
MA0149.1	MA0149.1	0.581
MA0150.1	MA0150.1	0.14
MA0152.1	MA0152.1	0.597
MA0153.1	MA0153.1	0.0146
MA0154.1	MA0154.1	0.48
MA0155.1	MA0155.1	0.426
MA0156.1	MA0156.1	0.314
MA0157.1	MA0157.1	0.0812
MA0159.1	MA0159.1	0.286
MA0160.1	MA0160.1	0.372
MA0162.1	MA0162.1	0.679
MA0163.1	MA0163.1	0.154
MA0164.1	MA0164.1	0.261
MA0258.1	MA0258.1	0.0663
MA0259.1	MA0259.1	0.927

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10491

Novel motif	Logo	P-value
1	1	0.0695
10	10	0.191
100	100	0.735
101	101	0.458
102	102	0.413
103	103	0.0605
104	104	0.924
105	105	0.217
106	106	0.0116
107	107	0.466
108	108	0.284
109	109	0.415
11	11	0.0897
110	110	0.329
111	111	0.00664
112	112	0.0498
113	113	0.402
114	114	0.525
115	115	0.134
116	116	0.368
117	117	0.501
118	118	0.717
119	119	0.0224
12	12	0.269
120	120	0.785
121	121	0.533
122	122	0.792
123	123	0.926
124	124	0.918
125	125	0.322
126	126	0.73
127	127	0.792
128	128	0.0315
129	129	0.227
13	13	0.0187
130	130	0.0313
131	131	0.691
132	132	0.351
133	133	0.545
134	134	0.763
135	135	0.517
136	136	0.66
137	137	0.649
138	138	0.233
139	139	0.415
14	14	0.988
140	140	0.0505
141	141	0.712
142	142	0.634
143	143	0.527
144	144	0.0268
145	145	0.0266
146	146	0.264
147	147	3.39985e-8
148	148	0.34
149	149	0.752
15	15	0.391
150	150	0.103
151	151	0.441
152	152	0.0528
153	153	0.433
154	154	0.149
155	155	0.55
156	156	0.101
157	157	0.883
158	158	0.731
159	159	0.921
160	160	0.703
161	161	0.171
162	162	0.411
163	163	0.409
164	164	0.0294
165	165	0.16
166	166	0.93
167	167	0.229
168	168	0.419
169	169	0.0541
17	17	0.0102
18	18	0.25
19	19	0.0108
2	2	0.147
20	20	0.886
21	21	0.466
22	22	0.155
23	23	0.0751
24	24	0.0869
25	25	0.429
26	26	0.0089
27	27	0.294
28	28	0.721
29	29	0.167
3	3	0.145
30	30	0.944
31	31	0.268
32	32	0.465
33	33	0.367
34	34	0.113
35	35	0.275
36	36	0.42
37	37	0.0797
38	38	0.253
39	39	0.0182
4	4	0.857
40	40	0.452
41	41	0.742
42	42	0.323
43	43	0.274
44	44	0.797
45	45	0.868
46	46	0.0654
47	47	0.269
48	48	0.199
49	49	0.192
5	5	0.227
50	50	0.356
51	51	0.651
52	52	0.196
53	53	0.554
54	54	0.662
55	55	0.374
56	56	0.84
57	57	0.327
58	58	0.224
59	59	0.545
6	6	0.18
60	60	0.0304
61	61	0.635
62	62	0.313
63	63	0.0805
64	64	0.36
65	65	0.0666
66	66	0.267
67	67	0.726
68	68	0.652
69	69	4.4459e-13
7	7	0.352
70	70	0.00568
71	71	0.0716
72	72	0.489
73	73	0.0158
74	74	0.0054
75	75	0.227
76	76	0.943
77	77	0.297
78	78	0.194
79	79	0.505
8	8	0.384
80	80	0.429
81	81	0.827
82	82	0.0322
83	83	0.0347
84	84	0.128
85	85	0.0435
86	86	0.146
87	87	0.889
88	88	0.622
89	89	0.304
9	9	0.57
90	90	0.399
91	91	0.188
92	92	0.214
93	93	0.143
94	94	0.961
95	95	0.911
96	96	0.331
97	97	0.0459
98	98	0.358
99	99	0.997

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10491

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011380 mouse vesicular gland- adult sample

part_of relathionship
UBERON:0000998 seminal vesicle
UBERON:0007194 vesicular gland

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000473 (testis)
0000998 (seminal vesicle)
0000991 (gonad)
0007194 (vesicular gland)
0000479 (tissue)
0000058 (duct)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003135 (male reproductive organ)
0003133 (reproductive organ)
0006868 (seminal fluid secreting gland)
0005904 (duct of male reproductive system)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0002530 (gland)
0010147 (male accessory sex gland)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003937 (sex gland)
0005399 (male reproductive gland)
0003101 (male organism)
0000079 (male reproductive system)
0006947 (male genital duct)
0004054 (internal male genitalia)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0011380 (mouse vesicular gland- adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005950
-|accession_numbers=CAGE;DRX009131;DRR010005;DRZ001430;DRZ002813
+|accession_numbers=CAGE;DRX009131;DRR010005;DRZ001430;DRZ002813;DRZ012780;DRZ014163
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000473,UBERON:0000998,UBERON:0000991,UBERON:0007194,UBERON:0000479,UBERON:0000058,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003135,UBERON:0003133,UBERON:0006868,UBERON:0005904,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0002530,UBERON:0010147,UBERON:0004175,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079,UBERON:0006947,UBERON:0004054
 |ancestors_in_cell_lineage_facet=
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:88143711..88143717,+!p2@Gata2!2.61!630.48!Gata2;;chr2:103143336..103143367,-!p1@Ehf!2.36!362.64!Ehf;;chr5:144951153..144951203,+!p1@Bhlha15!2.35!320.00!Bhlha15;;chr2:103264213..103264233,+!p1@Elf5!2.29!196.11!Elf5;;chr14:69808725..69808748,+!p1@Nkx3-1!2.23!169.03!Nkx3-1;;chr2:103264245..103264268,+!p2@Elf5!2.09!122.38!Elf5;;chr2:9800207..9800234,-!p1@Gata3!2.03!312.48!Gata3;;chr5:120120667..120120685,+!p3@Tbx3!2.01!188.59!Tbx3;;chr2:103143315..103143328,-!p2@Ehf!1.99!97.81!Ehf;;chr11:96143666..96143725,+!p1@Hoxb8!1.96!101.82!Hoxb8;;chr11:100683839..100683890,-!p2@Stat5b!1.60!88.78!Stat5b;;chr5:120120834..120120845,+!p8@Tbx3!1.55!34.11!Tbx3;;chr1:137155026..137155042,-!p1@Elf3!1.51!173.54!Elf3;;chr5:120121446..120121461,+!p2@Tbx3!1.51!100.31!Tbx3;;chr12:58646974..58647003,-!p1@Foxa1!1.49!39.62!Foxa1;;chr14:69808759..69808769,+!p2@Nkx3-1!1.46!28.09!Nkx3-1;;chr2:103264277..103264292,+!p3@Elf5!1.46!27.59!Elf5;;chr11:96055613..96055628,+!p1@Hoxb13!1.42!25.08!Hoxb13;;chr17:27865882..27865901,-!p1@Spdef!1.42!25.08!Spdef;;chr11:96153767..96153822,+!p1@Hoxb6!1.41!38.12!Hoxb6;;chr19:28754692..28754757,-!p1@Glis3!1.40!97.81!Glis3;;chr6:88148650..88148669,+!p1@Gata2!1.35!171.04!Gata2;;chr19:19185671..19185693,-!p1@Rorb!1.34!49.66!Rorb;;chr13:72101178..72101203,-!p1@Irx1!1.34!32.10!Irx1;;chr13:40826961..40827001,-!p4@Tfap2a!1.27!17.56!Tfap2a;;chr2:74536026..74536039,+!p1@Hoxd9!1.27!17.56!Hoxd9;;chr4:48058016..48058032,+!p3@Nr4a3!1.25!28.09!Nr4a3;;chr8:87643578..87643593,-!p1@Zfp791!1.22!32.10!Zfp791;;chr1:42752574..42752621,+!p@chr1:42752574..42752621,+!1.21!19.06!Pou3f3;;chr2:9809357..9809371,-!p2@Gata3!1.19!14.55!Gata3;;chr14:22808697..22808715,-!p4@Zfp503!1.18!16.55!Zfp503;;chr19:28754600..28754612,-!p2@Glis3!1.15!21.07!Glis3;;chr11:85646427..85646451,+!p4@Tbx2!1.13!21.57!Tbx2;;chr11:96055650..96055665,+!p3@Hoxb13!1.12!12.04!Hoxb13;;chr11:96055681..96055693,+!p2@Hoxb13!1.12!12.04!Hoxb13;;chr2:74543397..74543435,+!p2@Hoxd8!1.12!12.04!Hoxd8;;chr11:96160426..96160443,+!p2@Hoxb6!1.10!11.54!Hoxb6;;chr15:37162834..37162849,+!p2@Grhl2!1.09!13.54!Grhl2;;chr17:28409136..28409150,+!p3@Ppard!1.08!11.03!Ppard;;chr5:120130377..120130432,+!p10@Tbx3!1.06!10.53!Tbx3;;chr15:37163124..37163153,+!p3@Grhl2!1.06!10.53!Grhl2;;chr13:40825465..40825469,-!p2@Tfap2a!1.06!10.53!Tfap2a;;chr2:9809451..9809469,-!p6@Gata3!1.06!10.53!Gata3;;chr2:103264977..103264986,+!p6@Elf5!1.06!10.53!Elf5;;chr9:48644037..48644067,-!p2@Zbtb16!1.05!26.08!Zbtb16;;chr1:194979315..194979359,+!p1@Irf6!1.04!61.69!Irf6;;chr2:9809374..9809396,-!p4@Gata3!1.04!10.03!Gata3;;chr6:88148324..88148328,+!p3@Gata2!1.04!10.03!Gata2;;chr5:77543935..77543947,-!p4@Hopx!1.02!9.53!Hopx;;chr10:5734677..5734702,-!p4@Esr1!1.02!9.53!Esr1;;chr11:100683794..100683805,-!p4@Stat5b!1.00!9.03!Stat5b;;chr19:44831390..44831414,+!p1@Pax2!1.00!9.03!Pax2;;chr12:25257265..25257294,+!p2@Grhl1!1.00!9.03!Grhl1;;chr12:120085778..120085784,+!p2@Sp8!0.98!8.53!Sp8;;chr2:74549945..74549965,+!p4@Hoxd3!0.98!8.53!Hoxd3;;chr11:96213288..96213332,+!p@chr11:96213288..96213332,+!0.97!14.55!Hoxb2;;chr15:37162796..37162828,+!p1@Grhl2!0.97!14.04!Grhl2;;chr2:74549968..74549996,+!p1@Hoxd3!0.97!10.53!Hoxd3;;chr5:120120708..120120713,+!p12@Tbx3!0.96!8.03!Tbx3;;chr6:52190467..52190500,-!p1@Hoxa10!0.96!8.03!Hoxa10;;chr11:83664334..83664353,+!p2@Hnf1b!0.96!8.03!Hnf1b;;chr18:36441119..36441158,+!p2@Pura!0.95!19.56!Pura;;chr13:72766279..72766296,+!p2@Irx2!0.95!12.04!Irx2;;chr11:85646469..85646488,+!p5@Tbx2!0.95!12.04!Tbx2;;chr4:48058129..48058179,+!p2@Nr4a3!0.94!15.05!Nr4a3;;chr10:5734525..5734569,-!p3@Esr1!0.94!13.04!Esr1;;chr2:74535796..74535808,+!p3@Hoxd9!0.93!7.52!Hoxd9;;chr16:25801993..25802014,+!p1@Trp63!0.93!7.52!Trp63;;chr1:193007123..193007139,-!p1@Atf3!0.92!42.13!Atf3;;chr5:77543897..77543911,-!p2@Hopx!0.92!14.55!Hopx;;chr4:148275237..148275311,+!p2@Casz1!0.91!30.60!Casz1;;chr12:113917014..113917034,+!p1@Zbtb42!0.91!13.04!Zbtb42;;chr4:122673187..122673201,+!p2@Mycl1!0.90!12.54!Mycl1;;chr2:9809402..9809422,-!p5@Gata3!0.90!7.02!Gata3;;chr11:96143962..96144035,+!p2@Hoxb8!0.90!7.02!Hoxb8;;chr11:96143843..96143868,+!p3@Hoxb8!0.90!7.02!Hoxb8;;chr11:100721761..100721851,+!p1@Stat5a!0.89!52.16!Stat5a;;chr7:77511311..77511352,-!p4@Nr2f2!0.89!14.04!Nr2f2;;chr11:98636531..98636559,-!p1@Nr1d1!0.88!39.12!Nr1d1;;chr3:89197057..89197114,-!p1@Zbtb7b!0.88!23.07!Zbtb7b;;chr13:40829137..40829205,-!p1@Tfap2a!0.88!7.52!Tfap2a;;chrX:95345005..95345053,+!p1@Ar!0.88!6.52!Ar;;chr5:120130275..120130296,+!p11@Tbx3!0.88!6.52!Tbx3;;chr6:88143570..88143590,+!p4@Gata2!0.88!6.52!Gata2;;chr2:172375081..172375105,+!p1@Tfap2c!0.88!6.52!Tfap2c;;chr8:74842952..74842970,+!p1@Klf2!0.87!458.94!Klf2;;chr12:113916993..113917009,+!p2@Zbtb42!0.86!11.03!Zbtb42;;chr11:96147952..96147967,+!p1@Hoxb7!0.86!8.03!Hoxb7;;chr5:120121262..120121282,+!p6@Tbx3!0.86!7.02!Tbx3;;chr7:52471143..52471186,+!p1@Tead2!0.85!69.22!Tead2;;chr4:48058047..48058062,+!p1@Nr4a3!0.85!9.53!Nr4a3;;chr6:52195763..52195792,-!p2@Hoxa11!0.85!6.02!Hoxa11;;chr6:52195795..52195825,-!p1@Hoxa11!0.85!6.02!Hoxa11;;chr11:96160451..96160462,+!p5@Hoxb6!0.85!6.02!Hoxb6;;chr11:96160360..96160397,+!p3@Hoxb6!0.85!6.02!Hoxb6;;chr17:28408632..28408682,+!p1@1810013A23Rik,p4@Ppard!0.85!6.02!Ppard;;chr15:35225845..35225867,+!p1@Osr2!0.84!15.55!Osr2;;chr5:120121169..120121171,+!p4@Tbx3!0.84!11.03!Tbx3;;chr5:104121453..104121479,+!p4@Aff1!0.83!28.09!Aff1;;chr19:28754655..28754673,-!p3@Glis3!0.83!9.03!Glis3;;chr2:74550178..74550214,+!p5@Hoxd3!0.83!6.52!Hoxd3;;chr8:59799772..59799789,+!p1@Hand2!0.82!17.05!Hand2;;chr10:80809447..80809515,-!p5@Hmg20b!0.82!7.02!Hmg20b;;chr3:94176733..94176794,+!p1@Rorc!0.81!45.14!Rorc;;chr11:96145450..96145517,+!p2@Hoxb7!0.81!8.53!Hoxb7;;chr1:194979361..194979373,+!p2@Irf6!0.81!7.52!Irf6;;chr11:100683822..100683831,-!p8@Stat5b!0.81!5.52!Stat5b;;chr2:74543202..74543213,+!p3@Hoxd8!0.81!5.52!Hoxd8;;chr17:51971932..51971958,-!p2@Satb1!0.80!7.52!Satb1;;chr13:117099847..117099907,-!p1@Isl1!0.79!10.03!Isl1;;chr19:28754622..28754633,-!p4@Glis3!0.79!6.02!Glis3;;chr1:19199021..19199048,+!p8@Tfap2b!0.78!5.02!Tfap2b;;chr13:40824310..40824314,-!p6@Tfap2a!0.78!5.02!Tfap2a;;chr15:37163065..37163092,+!p4@Grhl2!0.78!5.02!Grhl2;;chr11:100720767..100720797,+!p4@Stat5a!0.78!5.02!Stat5a;;chr11:100721640..100721658,+!p2@Stat5a!0.78!5.02!Stat5a;;chr4:148178559..148178603,+!p1@Casz1!0.77!15.05!Casz1;;chr13:72101161..72101177,-!p2@Irx1!0.77!7.02!Irx1;;chr2:127308277..127308313,-!p4@Kcnip3!0.77!6.02!Kcnip3;;chr13:72101141..72101158,-!p3@Irx1!0.76!6.02!Irx1;;chr7:77511234..77511302,-!p2@Nr2f2!0.75!34.11!Nr2f2;;chr6:90412582..90412601,+!p1@Klf15!0.75!24.08!Klf15;;chr11:121380594..121380609,-!p2@Zfp750!0.75!8.53!Zfp750;;chr11:96213264..96213282,+!p@chr11:96213264..96213282,+!0.75!6.02!Hoxb2;;chr10:22539932..22539956,-!p1@Tcf21!0.74!13.04!Tcf21;;chr4:148178529..148178548,+!p3@Casz1!0.74!11.54!Casz1;;chr2:74542918..74542971,+!p1@Hoxd8!0.74!7.02!Hoxd8;;chr2:74517742..74517758,+!p2@Hoxd11!0.74!4.51!Hoxd11;;chr3:98186461..98186476,+!p2@Zfp697!0.74!4.51!Zfp697;;chr2:9809579..9809627,-!p7@Gata3!0.74!4.51!Gata3;;chr11:96160403..96160416,+!p4@Hoxb6!0.74!4.51!Hoxb6;;chr12:120085700..120085711,+!p1@Sp8!0.74!4.51!Sp8;;chr19:59532915..59532940,+!p5@Emx2!0.74!4.51!Emx2;;chr4:119486912..119486954,+!p3@Hivep3!0.73!8.03!Hivep3;;chr5:77524250..77524300,-!p1@Hopx!0.72!97.81!Hopx;;chr7:52960555..52960662,+!p1@Dbp!0.72!40.63!Dbp;;chr19:55816414..55816425,+!p4@Tcf7l2!0.71!24.08!Tcf7l2;;chr17:51952617..51952680,-!p3@Satb1!0.71!23.57!Satb1;;chr19:55816398..55816409,+!p5@Tcf7l2!0.71!21.57!Tcf7l2;;chr2:166888058..166888105,-!p2@Znfx1!0.71!14.55!Znfx1;;chr11:121380640..121380655,-!p1@Zfp750!0.70!7.02!Zfp750;;chr11:96132523..96132538,+!p3@Hoxb9!0.70!4.01!Hoxb9;;chr2:74549915..74549930,+!p6@Hoxd3!0.70!4.01!Hoxd3;;chr16:42907676..42907797,+!p1@Zbtb20!0.69!57.68!Zbtb20;;chr3:54559496..54559511,+!p1@Smad9!0.69!9.53!Smad9;;chr2:104966766..104966786,+!p1@Wt1!0.69!6.52!Wt1;;chr19:59533221..59533271,+!p1@Emx2!0.69!5.02!Emx2;;chr7:52960700..52960719,+!p2@Dbp!0.69!5.02!Dbp;;chr11:90252223..90252240,-!p1@Hlf!0.68!35.61!Hlf;;chr4:149862477..149862553,+!p3@Rere!0.68!15.05!Rere;;chr3:98186361..98186443,+!p1@Zfp697!0.67!42.13!Zfp697;;chr6:38204087..38204108,-!p2@D630045J12Rik!0.67!12.04!D630045J12Rik;;chr9:96653072..96653154,-!p1@Zbtb38!0.67!11.03!Zbtb38;;chr8:87297280..87297326,-!p2@Nfix!0.67!9.53!Nfix;;chr4:135700687..135700719,+!p2@Id3!0.67!6.02!Id3;;chr3:54559550..54559570,+!p4@Smad9!0.66!5.52!Smad9;;chr8:79426176..79426275,+!p1@Nr3c2!0.65!20.06!Nr3c2;;chr7:19946556..19946611,+!p1@Ppp1r13l!0.65!15.55!Ppp1r13l;;chr9:59797875..59797929,-!p1@Nr2e3!0.65!3.51!Nr2e3;;chr6:52210774..52210787,-!p1@Hoxa13!0.65!3.51!Hoxa13;;chr11:96055633..96055640,+!p4@Hoxb13!0.65!3.51!Hoxb13;;chr12:75002389..75002406,+!p4@Hif1a!0.65!3.51!Hif1a;;chr15:37163041..37163061,+!p5@Grhl2!0.65!3.51!Grhl2;;chr1:172797864..172797873,-!p2@Atf6!0.64!10.53!Atf6;;chr5:122499831..122499891,-!p1@Cux2!0.64!5.52!Cux2;;chr7:52071956..52071978,-!p1@Atf5!0.63!124.39!Atf5;;chrX:137135036..137135064,-!p4@Tsc22d3!0.63!7.02!Tsc22d3;;chr11:98636400..98636418,-!p4@Nr1d1!0.63!4.51!Nr1d1;;chr1:172797892..172797915,-!p1@Atf6!0.62!105.33!Atf6;;chr10:114821444..114821491,-!p1@Thap2!0.62!30.09!Thap2;;chr8:111228161..111228183,+!p@chr8:111228161..111228183,+!0.62!5.02!Zfhx3;;chr11:52096804..52096896,-!p1@Tcf7!0.61!29.59!Tcf7;;chr19:55816546..55816556,+!p3@Tcf7l2!0.61!13.54!Tcf7l2;;chr11:85646263..85646278,+!p2@Tbx2!0.61!9.03!Tbx2;;chr17:51951634..51951651,-!p6@Satb1!0.61!6.52!Satb1;;chr6:52176164..52176195,-!p1@Hoxa9!0.61!4.01!Hoxa9;;chr3:30408384..30408431,-!p4@Mecom!0.61!4.01!Mecom;;chr2:74536050..74536065,+!p2@Hoxd9!0.60!3.01!Hoxd9;;chr5:144951136..144951139,+!p2@Bhlha15!0.60!3.01!Bhlha15;;chr12:25257298..25257323,+!p5@Grhl1!0.60!3.01!Grhl1;;chr12:75002357..75002378,+!p6@Hif1a!0.60!3.01!Hif1a;;chr10:5734660..5734670,-!p7@Esr1!0.60!3.01!Esr1;;chr11:83664365..83664383,+!p1@Hnf1b!0.60!3.01!Hnf1b;;chr11:34108085..34108092,-!p1@Foxi1!0.60!3.01!Foxi1;;chr2:103264952..103264963,+!p7@El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4!0.21!1.50!Aff4;;chr19:5424878..5424890,-!p7@Drap1!0.21!1.50!Drap1;;chrX:137077682..137077692,-!p5@Tsc22d3!0.21!1.50!Tsc22d3;;chr4:55545051..55545110,-!p2@Klf4!0.21!1.00!Klf4;;chr5:104182694..104182724,+!p8@Aff1!0.21!1.00!Aff1;;chr2:120389531..120389614,-!p1@Zfp106!0.20!105.33!Zfp106;;chr8:3493135..3493212,+!p1@Zfp358!0.20!23.57!Zfp358;;chr13:96095213..96095255,+!p1@Zbed3!0.20!21.07!Zbed3;;chr14:22320101..22320119,+!p1@Myst4!0.20!19.06!Myst4;;chr12:77471524..77471607,+!p1@Zbtb1!0.20!18.06!Zbtb1;;chr7:134376741..134376831,+!p1@Zfp553!0.20!18.06!Zfp553;;chr3:94758041..94758142,+!p1@Rfx5!0.20!12.54!Rfx5;;chr2:169956656..169956684,-!p1@Zfp217!0.20!9.03!Zfp217;;chr3:52072296..52072310,+!p3@Foxo1!0.20!6.52!Foxo1;;chr14:100683672..100683717,-!p1@Klf12!0.20!6.02!Klf12;;chr7:4947697..4947718,-!p2@Zfp579!0.20!3.51!Zfp579;;chr3:135354903..135354945,-!p7@Nfkb1!0.20!2.51!Nfkb1;;chr6:134780163..134780197,+!p2@Crebl2!0.20!2.51!Crebl2;;chr6:72739234..72739256,-!p2@Tcf7l1!0.20!2.51!Tcf7l1;;chr2:115891381..115891392,-!p5@Meis2!0.20!2.01!Meis2;;chr2:48805633..48805648,+!p5@Mbd5!0.20!2.01!Mbd5;;chr13:55206625..55206636,+!p2@Zfp346!0.20!2.01!Zfp346;;chr13:44825008..44825066,+!p5@Jarid2!0.20!2.01!Jarid2;;chr12:85559762..85559778,-!p5@C130039O16Rik!0.20!1.50!C130039O16Rik;;chr7:19945089..19945107,+!p2@Ppp1r13l!0.20!1.50!Ppp1r13l;;chr8:87324311..87324316,-!p8@Nfix!0.20!1.50!Nfix;;chr3:5218563..5218587,+!p5@Zfhx4!0.20!1.50!Zfhx4;;chr4:99322820..99322845,+!p1@Foxd3!0.20!1.00!Foxd3;;chr5:104182943..104182954,+!p12@Aff1!0.20!1.00!Aff1;;chrX:34442872..34442899,-!p1@Nkrf!0.20!1.00!Nkrf;;chr6:48395677..48395688,-!p7@Zfp467!0.20!1.00!Zfp467;;chr7:6315994..6316007,+!p2@Zfp78!0.20!1.00!Zfp78;;chr7:52960730..52960762,+!p3@Dbp!0.20!1.00!Dbp;;chr18:3281725..3281740,-!p3@Crem!0.20!1.00!Crem;;chr16:55966492..55966517,+!p2@Rpl24,p2@Zbtb11!0.20!1.00!Zbtb11;;chr11:11585912..11585950,+!p6@Ikzf1!0.20!1.00!Ikzf1;;chr6:52663725..52663794,+!p1@Tax1bp1!0.19!211.16!Tax1bp1;;chr14:65568675..65568723,-!p1@Hmbox1!0.19!45.64!Hmbox1;;chr7:29551488..29551529,-!p1@Nfkbib!0.19!44.14!Nfkbib;;chr2:152561980..152561997,+!p1@Id1!0.19!40.63!Id1;;chr5:25004566..25004590,-!p1@Mll3!0.19!31.60!Mll3;;chr17:3557742..3557775,-!p1@Tfb1m!0.19!19.06!Tfb1m;;chr11:106134241..106134320,-!p2@Smarcd2!0.19!15.55!Smarcd2;;chr19:40969182..40969226,+!p1@Zfp518a!0.19!11.03!Zfp518a;;chr7:24919204..24919231,+!p2@Zfp235!0.19!7.02!Zfp235;;chr17:46693153..46693169,-!p2@Srf!0.19!6.52!Srf;;chr10:82226833..82226864,-!p3@Nfyb!0.19!6.52!Nfyb;;chr13:67585161..67585205,-!p1@Zfp874b!0.19!6.52!Zfp874b;;chr19:5610038..5610066,-!p1@Kat5!0.19!6.02!Kat5;;chr17:48061692..48061723,-!p5@Foxp4!0.19!6.02!Foxp4;;chr2:152758901..152758925,-!p1@Foxs1!0.19!5.52!Foxs1;;chr4:151401710..151401733,-!p2@Zbtb48!0.19!3.51!Zbtb48;;chr8:72520225..72520248,-!p9@Gatad2a!0.19!3.01!Gatad2a;;chr9:55785981..55786009,-!p2@Scaper!0.19!3.01!Scaper;;chr4:97444261..97444272,+!p9@Nfia!0.19!2.51!Nfia;;chr15:57526316..57526332,+!p4@Zhx2!0.19!2.51!Zhx2;;chr14:76814883..76814898,+!p9@Tsc22d1!0.19!2.01!Tsc22d1;;chr13:5860872..5860883,+!p3@Klf6!0.19!2.01!Klf6;;chr1:93698030..93698064,+!p1@Twist2!0.19!2.01!Twist2;;chr2:37286328..37286341,-!p3@Zbtb6!0.19!2.01!Zbtb6;;chrX:45947787..45947812,-!p3@Zfp280c!0.19!2.01!Zfp280c;;chr18:3281750..3281776,-!p2@Crem!0.19!2.01!Crem;;chr5:22939752..22939768,+!p5@Mll5!0.19!2.01!Mll5;;chr1:52065454..52065495,+!p1@Stat4!0.19!1.50!Stat4;;chr15:50721211..50721234,-!p6@Trps1!0.19!1.50!Trps1;;chr1:69732511..69732540,-!p2@Ikzf2!0.19!1.00!Ikzf2;;chr19:23216166..23216191,+!p6@Klf9!0.19!1.00!Klf9;;chr15:79178060..79178074,+!p2@Maff!0.19!1.00!Maff;;chr17:35031524..35031539,+!p4@Zbtb12!0.19!1.00!Zbtb12;;chr18:76219161..76219176,+!p4@Zbtb7c!0.19!1.00!Zbtb7c;;chr11:96213434..96213452,+!p@chr11:96213434..96213452,+!0.19!1.00!Hoxb2;;chr12:78063165..78063227,-!p1@Max!0.18!115.36!Max;;chr4:118846783..118846826,-!p1@Zfp691!0.18!18.06!Zfp691;;chr5:108697916..108697943,+!p2@Dr1!0.18!15.55!Dr1;;chr10:13685899..13685916,+!p1@Hivep2!0.18!13.54!Hivep2;;chr3:14578609..14578687,+!p1@E2f5!0.18!12.54!E2f5;;chr17:28369668..28369734,+!p1@Ppard!0.18!11.54!Ppard;;chr7:13551180..13551243,+!p1@Zfp324!0.18!10.53!Zfp324;;chr14:56223010..56223067,+!p1@Irf9!0.18!10.03!Irf9;;chr6:39068210..39068251,-!p1@Parp12!0.18!5.52!Parp12;;chr10:41996550..41996569,-!p2@Foxo3!0.18!5.52!Foxo3;;chrX:98449805..98449834,+!p3@Foxo4!0.18!3.01!Foxo4;;chr16:43619101..43619151,+!p6@Zbtb20!0.18!2.51!Zbtb20;;chr19:26679596..26679607,+!p8@Smarca2!0.18!2.01!Smarca2;;chr6:39068181..39068206,-!p3@Parp12!0.18!2.01!Parp12;;chr5:20387832..20387841,-!p2@Phtf2!0.18!1.50!Phtf2;;chrX:7341077..7341091,+!p5@Tfe3!0.18!1.50!Tfe3;;chr9:63869834..63869849,-!p5@Smad6!0.18!1.50!Smad6;;chr8:47825203..47825225,+!p3@Irf2!0.18!1.00!Irf2;;chr8:81923375..81923380,-!p6@Smad1!0.18!1.00!Smad1;;chr17:51971960..51971979,-!p1@Satb1!0.18!1.00!Satb1;;chr19:37511111..37511115,+!p2@Hhex!0.18!0.50!Hhex;;chr17:51951383..51951409,-!p19@Satb1!0.18!0.50!Satb1;;chr16:30064250..30064282,+!p6@Hes1!0.18!0.50!Hes1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@@ Line 45: / Line 45: @@
 |is_obsolete=
 |library_id=CNhs10491
-|library_id_phase_based=1:CNhs10491
+|library_id_phase_based=2:CNhs10491
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;51
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;51
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/vesicular%2520gland%252c%2520adult.CNhs10491.51-27F8.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/vesicular%2520gland%252c%2520adult.CNhs10491.51-27F8.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/vesicular%2520gland%252c%2520adult.CNhs10491.51-27F8.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/vesicular%2520gland%252c%2520adult.CNhs10491.51-27F8.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/vesicular%2520gland%252c%2520adult.CNhs10491.51-27F8.mm9.nobarcode.rdna.fa.gz
 |name=vesicular gland, adult
 |namespace=FANTOM5
@@ Line 51: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10491,LSID647,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
 |repeat_enrich_byfamily=0.0815836757345495,0,0,0,0,0.0470440871104068,-0.139824037642293,0,0,0,0,-0.0843392403965415,0,0,0,0,0,0,-0.0153471594472578,0,0,0,0,0,0.176546191435317,0,0,0.176546191435317,0,0,0,0,0.345860377276373,0,0,0,0,0,0.243074842255034,-0.0298104976840296,-0.203287076963062,-0.80766517504251,-0.0933224465750345,0,0,0,0,0,0,0,0,0,0,0.478030643426564,0,-0.0660055475634404,0,0,0,0,0,0,0.0201595423749731,0,0,0,0.0366867828462383,0.0881078868104717,0.0184551486642343,0.0852659463676518,0,0.124024404159539,-0.057333956514857,0.127127669774482,0,0,0,0.0620847412128998,0.183372808305112,0.0977145965954094,0,0,0,0,0,0,0,-0.119234010401656,0.15357426388751,0,0,0,0,0
@@ Line 88: / Line 97: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:51-27F8;search_select_hide=table117:51-27F8
 }}

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FF:51-27F8: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 19:18, 4 June 2020

CNhs10491

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0