FFCP PHASE1:Mm9::chr12:28021852..28021888,-: Difference between revisions
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|id=chr12:28021852..28021888,-
|short_description=p@chr12:28021852..28021888,-
|description=CAGE_peak_at_chr12:28021852..28021888,-
|association_with_transcript=NA
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=100 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr12:28021852..28021888,- | |||
|description=CAGE_peak_at_chr12:28021852..28021888,- | |||
|id=chr12:28021852..28021888,- | |||
|ontology_enrichment_celltype=CL:0000540!1.27e-15!33;CL:0000047!1.27e-15!33;CL:0000031!1.27e-15!33;CL:0000404!1.27e-15!33;CL:0000221!1.42e-11!44;CL:0000133!1.42e-11!44;CL:0000393!2.66e-11!39;CL:0000211!2.66e-11!39;CL:0002319!3.75e-11!43;CL:0000117!1.56e-09!23;CL:0000337!1.56e-09!23;CL:0000055!6.29e-08!50;CL:0000107!6.27e-07!9;CL:0002609!8.88e-07!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,5.45e-31,33;CL:0000047,5.45e-31,33;CL:0000031,5.45e-31,33;CL:0000404,5.45e-31,33;CL:0000393,3.03e-25,39;CL:0000211,3.03e-25,39;CL:0002319,2.61e-22,43;CL:0000221,1.17e-21,44;CL:0000133,1.17e-21,44;CL:0000117,7.19e-19,23;CL:0000337,7.19e-19,23;CL:0002609,3.33e-14,6;CL:0000107,8.39e-12,9;CL:0002321,2.48e-11,70;CL:0000723,3.04e-08,91;CL:0000048,3.04e-08,91;CL:0002608,7.47e-08,3;CL:0000120,1.81e-07,3;CL:0000034,2.29e-07,97;CL:0002613,2.30e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!9.60e-10!73;UBERON:0005743!9.60e-10!73;UBERON:0000073!1.81e-09!75;UBERON:0001016!1.81e-09!75;UBERON:0004121!5.61e-09!102;UBERON:0000924!5.61e-09!102;UBERON:0006601!5.61e-09!102;UBERON:0002346!2.21e-08!71;UBERON:0003075!2.21e-08!71;UBERON:0007284!2.21e-08!71;UBERON:0003056!1.19e-07!49;UBERON:0002410!6.27e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.17e-17,73;UBERON:0001016,1.43e-16,75;UBERON:0004121,3.02e-16,95;UBERON:0000924,3.02e-16,95;UBERON:0006601,3.02e-16,95;UBERON:0002346,2.37e-13,64;UBERON:0003075,2.37e-13,64;UBERON:0007284,2.37e-13,64;UBERON:0010371,5.17e-12,73;UBERON:0002410,8.39e-12,9;UBERON:0003056,4.07e-10,49;UBERON:0002020,8.25e-10,34;UBERON:0000010,2.03e-09,11;UBERON:0010314,2.94e-08,92;UBERON:0001049,3.69e-08,52;UBERON:0005068,3.69e-08,52;UBERON:0006241,3.69e-08,52;UBERON:0007135,3.69e-08,52;UBERON:0002780,4.58e-08,39;UBERON:0001890,4.58e-08,39;UBERON:0006240,4.58e-08,39;UBERON:0003080,8.84e-08,40;UBERON:0000073,1.05e-07,54;UBERON:0003528,2.14e-07,29;UBERON:0002791,2.14e-07,29;UBERON:0001893,2.14e-07,29;UBERON:0000369,2.20e-07,5;UBERON:0002435,2.20e-07,5;UBERON:0000204,2.20e-07,5;UBERON:0010082,2.20e-07,5 | |||
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|phase1_expression=1.12104192973356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0,0,0,0,0,0,0,0,0,7.89034197352431,8.46385566835253,4.43681982454325,0,0,0,0,0,0.299600110518405,0,20.841612074004,14.3106294631592,15.984697062705,0.285650984403804,0.220868540951614,10.2892271340561,14.5685115947719,14.7075005857603,0,0,0.153606533256243,5.27545150920775,6.49562269577109,7.29278718779464,0,0,0.15279824777681,2.35702868378934,1.28134512719193,3.54158947068071,0.075726193333184,0,0,0,0,0,0,0,0,0,0,0,0.704217098883403,0,0,0,0.216491041011214,0.506719730950197,0,0,0,0,0.346970653532272,0.304465478312141,0,0,0.23517741427141,0,0,0,0,0.161766849947409,0,0.484875253135222,0,0.292780797011547,0,0.255457055208591,0,0,0,0.299581278809645,0.457500602818626,6.28271760564322,0,0,0.41557608911912,0.162241263067758,0.203678727700633,0,0,0,2.21204753036596,0.459804208866946,1.80062129805349,1.80845781402858,0.884474488967262,1.7935920839879,0.562210347358373,0,1.07783996466421,1.13463648100692,0.879755620819744,0.219195732427575,2.50242524303038,0,0.205782136407943,1.19420560091096,0,0,0,0.207125772535502,0.469052119962192,0.36012412292203,0.23674473558521,0.196764231747404,0,0.232533944750408,0,0,0,0,0.0810688095458557,0,0.219550115291051,0,0,7.30622747892919,0,0,2.13288250535234,1.62565670302307,0.128867461322093,0.201683524623343,0.444756087689741,0,0,0,0,0,0,0,0,0,0.379335801906163,1.14248512609729,2.25415471346161,0.814605311381257,0.193952487167626,0.350679099451593,0,0,0,0,0,0.166845105716094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0.169745085775188,0.469380496577004,0,0.238043640886014,0.390267295715598,0.157635144106191,1.32878813789265,0.159454768657487,0,0,0.144649058581512,0,0,0,0,0,0,0,0,1.89304931649754,1.56175497718655,1.29254038639679,1.19484398976276,1.11399337041197,1.69845918473299,1.21443210502468,0.876767573733936,1.18586333383957,0,0,0,0,0,0,0.242780636154981,0,0,0,0,0,0,0,0,0,0,0,4.86164953884538,1.55230420539305,1.50035924522115,0.177340233642274,0.713475270408282,0.329098041204242,0,0,0.21183207086382,0,0,0,0.0603129249281559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.949007980743406,0.406638934253697,0.216010681643603,0,0.218362563746178,0,0,0,0,0,0,0.897099276263873,0.496375471371293,0.194451188344048,0.516639293910924,0.337912250981556,0.234714477291508,0.2604087696879,0,0,0,0,0.202725215290164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0,0,0.515559547031063,0,0,0,0,0,0,6.74617759297148,2.39414924040619,1.87806966329548,0.972426868273176,0.838452650511929,0.919217542250071,0.888986911206461,0.206035057238894,0.64183841918363,0.252697211763798,0.760437899670719,0,0.561849044819294,0.384150914429216,0.516919220600519,0,0.579421629724277,0.192909220463705,0.824171801606613,0.588795680537589,0.342869252385415,0.70990322463735,0,0.581385666529314,0.941093804153306,0.423073039458382,0.73171189149109,0.789209134313529,0.543216455383447,0.561142271657738,0.237270036248348,0.788035859004508,0.409231043169689,1.08455788830176,0.385813221962283,0.749431733813838,0.233931608445408,0.214871054048298,0.191288332068843,0,0 | ||
|short_description=p@chr12:28021852..28021888,- | |||
}} | }} |
Latest revision as of 22:48, 4 August 2015
Short description: | p@chr12:28021852..28021888, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:28021852..28021888, - |
Coexpression cluster: | MCL_coexpression_mm9:100 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 5.45e-31 | 33 |
neuronal stem cell | 5.45e-31 | 33 |
neuroblast | 5.45e-31 | 33 |
electrically signaling cell | 5.45e-31 | 33 |
electrically responsive cell | 3.03e-25 | 39 |
electrically active cell | 3.03e-25 | 39 |
neural cell | 2.61e-22 | 43 |
ectodermal cell | 1.17e-21 | 44 |
neurectodermal cell | 1.17e-21 | 44 |
CNS neuron (sensu Vertebrata) | 7.19e-19 | 23 |
neuroblast (sensu Vertebrata) | 7.19e-19 | 23 |
neuron of cerebral cortex | 3.33e-14 | 6 |
autonomic neuron | 8.39e-12 | 9 |
embryonic cell | 2.48e-11 | 70 |
somatic stem cell | 3.04e-08 | 91 |
multi fate stem cell | 3.04e-08 | 91 |
hippocampal neuron | 7.47e-08 | 3 |
granule cell | 1.81e-07 | 3 |
stem cell | 2.29e-07 | 97 |
striatum neuron | 2.30e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.17e-17 | 73 |
nervous system | 1.43e-16 | 75 |
ectoderm-derived structure | 3.02e-16 | 95 |
ectoderm | 3.02e-16 | 95 |
presumptive ectoderm | 3.02e-16 | 95 |
neurectoderm | 2.37e-13 | 64 |
neural plate | 2.37e-13 | 64 |
presumptive neural plate | 2.37e-13 | 64 |
ecto-epithelium | 5.17e-12 | 73 |
autonomic nervous system | 8.39e-12 | 9 |
pre-chordal neural plate | 4.07e-10 | 49 |
gray matter | 8.25e-10 | 34 |
peripheral nervous system | 2.03e-09 | 11 |
structure with developmental contribution from neural crest | 2.94e-08 | 92 |
neural tube | 3.69e-08 | 52 |
neural rod | 3.69e-08 | 52 |
future spinal cord | 3.69e-08 | 52 |
neural keel | 3.69e-08 | 52 |
regional part of forebrain | 4.58e-08 | 39 |
forebrain | 4.58e-08 | 39 |
future forebrain | 4.58e-08 | 39 |
anterior neural tube | 8.84e-08 | 40 |
regional part of nervous system | 1.05e-07 | 54 |
brain grey matter | 2.14e-07 | 29 |
regional part of telencephalon | 2.14e-07 | 29 |
telencephalon | 2.14e-07 | 29 |
corpus striatum | 2.20e-07 | 5 |
striatum | 2.20e-07 | 5 |
ventral part of telencephalon | 2.20e-07 | 5 |
future corpus striatum | 2.20e-07 | 5 |