FF:17-12C2: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00005853 | ||
|accession_numbers=CAGE;DRX009046;DRR009920;DRZ001345;DRZ002728;DRZ012695;DRZ014078 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001896,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0004733,UBERON:0004732,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0002298,UBERON:0002028,UBERON:0005290 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001896,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0004733,UBERON:0004732,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0002298,UBERON:0002028,UBERON:0005290 | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr16:91270004..91270023,+!p1@Olig1!2.40!280.64!Olig1;;chr5:138199361..138199441,+!p2@Tsc22d4!2.07!213.21!Tsc22d4;;chr11:96143666..96143725,+!p1@Hoxb8!1.82!74.50!Hoxb8;;chr16:91225808..91225824,+!p1@Olig2!1.81!62.94!Olig2;;chrX:34442872..34442899,-!p1@Nkrf!1.62!52.18!Nkrf;;chr15:76353005..76353021,-!p2@Scrt1!1.59!38.05!Scrt1;;chr15:76352434..76352488,-!p4@Scrt1!1.55!34.68!Scrt1;;chr2:127347067..127347093,-!p1@Kcnip3!1.52!52.66!Kcnip3;;chr17:48015839..48015915,-!p3@Foxp4!1.48!34.20!Foxp4;;chr15:78994907..78994926,-!p1@Sox10!1.44!66.63!Sox10;;chr7:116154364..116154444,+!p1@Tub!1.44!45.44!Tub;;chr8:24780125..24780143,+!p1@Zmat4!1.42!36.28!Zmat4;;chr15:76352677..76352737,-!p3@Scrt1!1.42!25.53!Scrt1;;chr7:146768691..146768707,-!p1@Nkx6-2!1.42!25.21!Nkx6-2;;chr2:127347042..127347058,-!p3@Kcnip3!1.41!24.89!Kcnip3;;chr1:6477388..6477419,+!p3@St18!1.41!24.56!St18;;chr18:36441119..36441158,+!p2@Pura!1.37!53.62!Pura;;chr1:42752574..42752621,+!p@chr1:42752574..42752621,+!1.36!27.78!Pou3f3;;chr12:30219426..30219506,+!p2@Myt1l!1.36!21.83!Myt1l;;chr19:19185671..19185693,-!p1@Rorb!1.34!49.45!Rorb;;chr10:67375146..67375208,-!p2@Zfp365!1.34!31.47!Zfp365;;chr3:95032091..95032183,-!p1@Mllt11!1.33!167.13!Mllt11;;chr11:96685444..96685473,-!p5@Nfe2l1!1.33!20.55!Nfe2l1;;chr9:91260594..91260612,-!p1@Zic1!1.33!20.55!Zic1;;chr17:25707623..25707639,-!p1@Sox8!1.32!83.49!Sox8;;chr9:91260616..91260653,-!p2@Zic1!1.30!19.11!Zic1;;chr16:91270091..91270143,+!p2@Olig1!1.29!18.46!Olig1;;chr2:168427068..168427115,-!p3@Nfatc2!1.29!18.30!Nfatc2;;chr12:54349410..54349461,+!p1@Npas3!1.26!20.71!Npas3;;chr4:150482563..150482655,-!p2@Camta1!1.25!59.72!Camta1;;chr2:65683890..65683907,+!p1@Csrnp3!1.25!32.11!Csrnp3;;chr11:96143962..96144035,+!p2@Hoxb8!1.22!15.57!Hoxb8;;chr6:52154414..52154462,-!p1@Hoxa5!1.21!21.03!Hoxa5;;chr7:148008023..148008092,-!p1@Zfp941!1.19!34.52!Zfp941;;chr4:58956447..58956510,+!p1@Zkscan16!1.19!31.47!Zkscan16;;chr3:95032515..95032553,-!p5@Mllt11!1.18!17.18!Mllt11;;chr8:107793688..107793736,+!p1@Hsf4!1.17!18.14!Hsf4;;chr2:163051181..163051205,+!p2@Tox2!1.17!13.65!Tox2;;chr1:189821714..189821761,+!p1@Esrrg!1.14!23.92!Esrrg;;chr3:95032213..95032226,-!p6@Mllt11!1.14!15.41!Mllt11;;chrX:34442842..34442866,-!p3@Nkrf!1.12!12.20!Nkrf;;chr10:84218800..84218829,+!p2@Rfx4!1.12!12.20!Rfx4;;chr2:115890294..115890334,-!p9@Meis2!1.11!16.22!Meis2;;chr19:10315179..10315241,-!p1@Gm98!1.09!118.33!Gm98;;chr8:87297878..87297935,-!p3@Nfix!1.09!25.21!Nfix;;chr15:102865048..102865073,+!p3@Hoxc4!1.08!13.97!Hoxc4;;chr2:163030219..163030258,+!p5@Tox2!1.07!10.76!Tox2;;chr15:103170533..103170556,-!p1@Zfp385a!1.06!39.66!Zfp385a;;chrX:137083127..137083138,-!p9@Tsc22d3!1.06!10.44!Tsc22d3;;chr6:52161666..52161711,-!p1@Hoxa6!1.05!10.28!Hoxa6;;chr11:96160360..96160397,+!p3@Hoxb6!1.05!10.11!Hoxb6;;chr13:72766250..72766273,+!p1@Irx2!1.04!15.41!Irx2;;chr4:150513630..150513686,-!p4@Camta1!1.04!11.56!Camta1;;chr6:145814003..145814056,-!p1@Bhlhe41!1.03!28.42!Bhlhe41;;chr10:67375368..67375433,-!p1@Zfp365!1.03!17.34!Zfp365;;chr3:34548946..34548972,+!p2@Sox2!1.02!10.44!Sox2;;chr11:96164821..96164865,+!p1@Hoxb5!1.02!9.47!Hoxb5;;chr7:91558392..91558434,-!p1@Arnt2!1.01!26.17!Arnt2;;chr16:91225654..91225671,+!p2@Olig2!1.01!9.31!Olig2;;chr5:122499831..122499891,-!p1@Cux2!1.00!13.97!Cux2;;chr15:102865088..102865107,+!p1@Hoxc4!1.00!12.04!Hoxc4;;chr3:95032197..95032208,-!p3@Mllt11!0.99!11.08!Mllt11;;chr2:162769220..162769252,+!p1@L3mbtl1!0.99!8.83!L3mbtl1;;chr11:96685487..96685512,-!p7@Nfe2l1!0.99!8.67!Nfe2l1;;chr14:122874619..122874634,+!p1@Zic2!0.99!8.67!Zic2;;chr14:104867201..104867258,-!p1@Pou4f1!0.98!12.04!Pou4f1;;chr11:98190918..98190951,-!p1@Neurod2!0.98!8.51!Neurod2;;chr6:145813905..145813932,-!p2@Bhlhe41!0.97!16.06!Bhlhe41;;chr7:38554763..38554780,-!p1@Zfp536!0.97!15.41!Zfp536;;chr2:65768174..65768247,+!p2@Csrnp3!0.95!7.87!Csrnp3;;chr11:90252223..90252240,-!p1@Hlf!0.94!67.11!Hlf;;chrX:108009761..108009788,+!p1@Pou3f4!0.94!7.71!Pou3f4;;chr11:98636531..98636559,-!p1@Nr1d1!0.93!44.47!Nr1d1;;chr10:84218895..84218909,+!p1@Rfx4!0.93!7.55!Rfx4;;chr3:34548909..34548927,+!p1@Sox2!0.92!12.68!Sox2;;chr3:95032558..95032641,-!p2@Mllt11!0.91!41.90!Mllt11;;chr2:25562263..25562314,+!p2@Bmyc!0.91!28.90!Bmyc;;chr12:72149325..72149343,+!p2@Arid4a!0.91!10.28!Arid4a;;chr2:151907546..151907561,+!p1@Scrt2!0.91!7.06!Scrt2;;chr6:134780163..134780197,+!p2@Crebl2!0.90!16.70!Crebl2;;chr2:163030186..163030204,+!p4@Tox2!0.89!6.74!Tox2;;chr9:106362954..106362977,+!p6@Pcbp4!0.88!6.58!Pcbp4;;chr13:44936126..44936164,+!p6@Jarid2!0.87!7.55!Jarid2;;chr2:127347094..127347111,-!p2@Kcnip3!0.86!10.60!Kcnip3;;chr6:52154386..52154407,-!p2@Hoxa5!0.86!8.03!Hoxa5;;chr3:101814061..101814094,+!p1@Nhlh2!0.86!6.26!Nhlh2;;chr12:30213247..30213333,+!p1@Myt1l!0.86!6.26!Myt1l;;chr9:106356278..106356292,+!p3@Pcbp4!0.85!10.76!Pcbp4;;chr10:80893711..80893784,-!p3@Nfic!0.84!33.07!Nfic;;chr6:117813087..117813121,+!p1@Zfp239!0.83!23.44!Zfp239;;chr15:103170516..103170531,-!p2@Zfp385a!0.83!14.29!Zfp385a;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44;;chrX:137077653..137077669,-!p3@Tsc22d3!0.17!5.30!Tsc22d3;;chr9:21420596..21420607,+!p4@Smarca4!0.17!4.82!Smarca4;;chr19:28085485..28085544,-!p5@Rfx3!0.17!4.50!Rfx3;;chr6:92041399..92041417,+!p2@Nr2c2!0.17!3.69!Nr2c2;;chr1:170362437..170362478,-!p5@Pbx1!0.17!3.37!Pbx1;;chr7:37483021..37483078,+!p1@Tshz3!0.17!3.37!Tshz3;;chr9:21420610..21420621,+!p5@Smarca4!0.17!3.37!Smarca4;;chr2:38781916..38781974,-!p1@Nr6a1!0.17!3.21!Nr6a1;;chr2:115891409..115891425,-!p2@Meis2!0.17!3.05!Meis2;;chr9:113840082..113840105,+!p3@Ubp1!0.17!3.05!Ubp1;;chr2:160698668..160698679,-!p4@Zhx3!0.17!1.61!Zhx3;;chr11:98636657..98636668,-!p6@Nr1d1!0.17!1.44!Nr1d1;;chr11:18918434..18918489,-!p3@Meis1!0.17!1.28!Meis1;;chr12:16817785..16817796,+!p2@E2f6!0.17!1.28!E2f6;;chr8:123608252..123608268,+!p1@Foxf1a!0.17!1.12!Foxf1a;;chr8:118231350..118231385,-!p7@Maf!0.17!1.12!Maf;;chr7:16760434..16760453,+!p2@LOC100046899,p2@Meis3!0.17!0.96!Meis3;;chr6:47998938..47998955,-!p2@Zfp777!0.17!0.96!Zfp777;;chr17:46692970..46692977,-!p5@Srf!0.17!0.96!Srf;;chr1:64168228..64168250,-!p7@Klf7!0.17!0.96!Klf7;;chr2:169459017..169459029,+!p9@Tshz2!0.17!0.80!Tshz2;;chr18:65740031..65740054,+!p5@Zfp532!0.17!0.80!Zfp532;;chr16:55973994..55974005,+!p8@Rpl24,p8@Zbtb11!0.17!0.80!Zbtb11;;chr15:81633224..81633235,+!p5@Tef!0.17!0.80!Tef;;chr8:123640090..123640101,+!p2@Foxc2!0.17!0.64!Foxc2;;chr11:44431191..44431205,+!p11@Ebf1!0.17!0.64!Ebf1;;chr4:117354821..117354830,-!p3@Dmap1!0.17!0.64!Dmap1;;chr2:74543202..74543213,+!p3@Hoxd8!0.17!0.48!Hoxd8;;chr4:97248607..97248649,+!p15@Nfia!0.17!0.48!Nfia;;chr4:22415600..22415616,-!p3@Pou3f2!0.17!0.48!Pou3f2;;chr2:9809357..9809371,-!p2@Gata3!0.17!0.48!Gata3;;chr2:9809451..9809469,-!p6@Gata3!0.17!0.48!Gata3;;chr2:74583741..74583750,+!p10@Hoxd3!0.17!0.48!Hoxd3;;chr3:66785201..66785226,-!p3@Shox2!0.17!0.48!Shox2;;chr3:17954233..17954249,+!p1@Bhlhe22!0.17!0.48!Bhlhe22;;chr4:150503544..150503561,-!p8@Camta1!0.17!0.48!Camta1;;chr3:135257370..135257389,-!p9@Nfkb1!0.17!0.48!Nfkb1;;chr3:34548845..34548856,+!p4@Sox2!0.17!0.48!Sox2;;chr4:61869681..61869704,-!p3@Zfp37!0.17!0.48!Zfp37;;chr4:107107224..107107259,+!p2@Glis1!0.17!0.48!Glis1;;chr2:74543397..74543435,+!p2@Hoxd8!0.17!0.48!Hoxd8;;chr9:96632593..96632620,-!p12@Zbtb38!0.17!0.48!Zbtb38;;chr9:98855692..98855710,+!p2@Foxl2!0.17!0.48!Foxl2;;chr9:55388997..55389016,+!p1@Isl2!0.17!0.48!Isl2;;chr8:26958093..26958148,-!p2@Ash2l!0.17!0.48!Ash2l;;chr9:69608731..69608742,-!p2@Foxb1!0.17!0.48!Foxb1;;chrX:137077530..137077533,-!p11@Tsc22d3!0.17!0.48!Tsc22d3;;chr8:94325779..94325791,-!p7@Irx3!0.17!0.48!Irx3;;chr8:12395500..12395511,+!p5@Sox1!0.17!0.48!Sox1;;chrX:108009602..108009615,+!p4@Pou3f4!0.17!0.48!Pou3f4;;chr9:21992581..21992593,+!p1@Zfp872!0.17!0.48!Zfp872;;chr8:87298020..87298041,-!p9@Nfix!0.17!0.48!Nfix;;chr8:87297330..87297365,-!p5@Nfix!0.17!0.48!Nfix;;chr9:91263649..91263666,+!p3@Zic4!0.17!0.48!Zic4;;chr16:43508231..43508271,+!p21@Zbtb20!0.17!0.48!Zbtb20;;chr18:52775562..52775650,+!p1@Zfp474!0.17!0.48!Zfp474;;chr19:44831390..44831414,+!p1@Pax2!0.17!0.48!Pax2;;chr16:43503417..43503436,+!p26@Zbtb20!0.17!0.48!Zbtb20;;chr16:43364258..43364270,+!p27@Zbtb20!0.17!0.48!Zbtb20;;chr17:48015995..48016037,-!p12@Foxp4!0.17!0.48!Foxp4;;chr1:78193687..78193692,-!p1@Pax3!0.17!0.48!Pax3;;chr2:163028876..163028885,+!p7@Tox2!0.17!0.48!Tox2;;chr1:19202352..19202354,+!p2@Tfap2b!0.17!0.48!Tfap2b;;chr1:169528581..169528607,+!p7@Rxrg!0.17!0.48!Rxrg;;chr2:181501822..181501834,+!p8@Myt1!0.17!0.48!Myt1;;chr2:33496386..33496410,-!p1@Lmx1b!0.17!0.48!Lmx1b;;chr2:151907368..151907379,+!p8@Scrt2!0.17!0.48!Scrt2;;chr1:169619239..169619257,+!p4@Lmx1a!0.17!0.48!Lmx1a;;chr2:56967381..56967386,-!p8@Nr4a2!0.17!0.48!Nr4a2;;chr2:154395524..154395535,-!p5@E2f1!0.17!0.48!E2f1;;chr1:169528491..169528505,+!p4@Rxrg!0.17!0.48!Rxrg;;chr6:88143570..88143590,+!p4@Gata2!0.17!0.48!Gata2;;chr6:85463580..85463585,-!p1@Egr4!0.17!0.48!Egr4;; | |expression_enrichment_score=chr16:91270004..91270023,+!p1@Olig1!2.40!280.64!Olig1;;chr5:138199361..138199441,+!p2@Tsc22d4!2.07!213.21!Tsc22d4;;chr11:96143666..96143725,+!p1@Hoxb8!1.82!74.50!Hoxb8;;chr16:91225808..91225824,+!p1@Olig2!1.81!62.94!Olig2;;chrX:34442872..34442899,-!p1@Nkrf!1.62!52.18!Nkrf;;chr15:76353005..76353021,-!p2@Scrt1!1.59!38.05!Scrt1;;chr15:76352434..76352488,-!p4@Scrt1!1.55!34.68!Scrt1;;chr2:127347067..127347093,-!p1@Kcnip3!1.52!52.66!Kcnip3;;chr17:48015839..48015915,-!p3@Foxp4!1.48!34.20!Foxp4;;chr15:78994907..78994926,-!p1@Sox10!1.44!66.63!Sox10;;chr7:116154364..116154444,+!p1@Tub!1.44!45.44!Tub;;chr8:24780125..24780143,+!p1@Zmat4!1.42!36.28!Zmat4;;chr15:76352677..76352737,-!p3@Scrt1!1.42!25.53!Scrt1;;chr7:146768691..146768707,-!p1@Nkx6-2!1.42!25.21!Nkx6-2;;chr2:127347042..127347058,-!p3@Kcnip3!1.41!24.89!Kcnip3;;chr1:6477388..6477419,+!p3@St18!1.41!24.56!St18;;chr18:36441119..36441158,+!p2@Pura!1.37!53.62!Pura;;chr1:42752574..42752621,+!p@chr1:42752574..42752621,+!1.36!27.78!Pou3f3;;chr12:30219426..30219506,+!p2@Myt1l!1.36!21.83!Myt1l;;chr19:19185671..19185693,-!p1@Rorb!1.34!49.45!Rorb;;chr10:67375146..67375208,-!p2@Zfp365!1.34!31.47!Zfp365;;chr3:95032091..95032183,-!p1@Mllt11!1.33!167.13!Mllt11;;chr11:96685444..96685473,-!p5@Nfe2l1!1.33!20.55!Nfe2l1;;chr9:91260594..91260612,-!p1@Zic1!1.33!20.55!Zic1;;chr17:25707623..25707639,-!p1@Sox8!1.32!83.49!Sox8;;chr9:91260616..91260653,-!p2@Zic1!1.30!19.11!Zic1;;chr16:91270091..91270143,+!p2@Olig1!1.29!18.46!Olig1;;chr2:168427068..168427115,-!p3@Nfatc2!1.29!18.30!Nfatc2;;chr12:54349410..54349461,+!p1@Npas3!1.26!20.71!Npas3;;chr4:150482563..150482655,-!p2@Camta1!1.25!59.72!Camta1;;chr2:65683890..65683907,+!p1@Csrnp3!1.25!32.11!Csrnp3;;chr11:96143962..96144035,+!p2@Hoxb8!1.22!15.57!Hoxb8;;chr6:52154414..52154462,-!p1@Hoxa5!1.21!21.03!Hoxa5;;chr7:148008023..148008092,-!p1@Zfp941!1.19!34.52!Zfp941;;chr4:58956447..58956510,+!p1@Zkscan16!1.19!31.47!Zkscan16;;chr3:95032515..95032553,-!p5@Mllt11!1.18!17.18!Mllt11;;chr8:107793688..107793736,+!p1@Hsf4!1.17!18.14!Hsf4;;chr2:163051181..163051205,+!p2@Tox2!1.17!13.65!Tox2;;chr1:189821714..189821761,+!p1@Esrrg!1.14!23.92!Esrrg;;chr3:95032213..95032226,-!p6@Mllt11!1.14!15.41!Mllt11;;chrX:34442842..34442866,-!p3@Nkrf!1.12!12.20!Nkrf;;chr10:84218800..84218829,+!p2@Rfx4!1.12!12.20!Rfx4;;chr2:115890294..115890334,-!p9@Meis2!1.11!16.22!Meis2;;chr19:10315179..10315241,-!p1@Gm98!1.09!118.33!Gm98;;chr8:87297878..87297935,-!p3@Nfix!1.09!25.21!Nfix;;chr15:102865048..102865073,+!p3@Hoxc4!1.08!13.97!Hoxc4;;chr2:163030219..163030258,+!p5@Tox2!1.07!10.76!Tox2;;chr15:103170533..103170556,-!p1@Zfp385a!1.06!39.66!Zfp385a;;chrX:137083127..137083138,-!p9@Tsc22d3!1.06!10.44!Tsc22d3;;chr6:52161666..52161711,-!p1@Hoxa6!1.05!10.28!Hoxa6;;chr11:96160360..96160397,+!p3@Hoxb6!1.05!10.11!Hoxb6;;chr13:72766250..72766273,+!p1@Irx2!1.04!15.41!Irx2;;chr4:150513630..150513686,-!p4@Camta1!1.04!11.56!Camta1;;chr6:145814003..145814056,-!p1@Bhlhe41!1.03!28.42!Bhlhe41;;chr10:67375368..67375433,-!p1@Zfp365!1.03!17.34!Zfp365;;chr3:34548946..34548972,+!p2@Sox2!1.02!10.44!Sox2;;chr11:96164821..96164865,+!p1@Hoxb5!1.02!9.47!Hoxb5;;chr7:91558392..91558434,-!p1@Arnt2!1.01!26.17!Arnt2;;chr16:91225654..91225671,+!p2@Olig2!1.01!9.31!Olig2;;chr5:122499831..122499891,-!p1@Cux2!1.00!13.97!Cux2;;chr15:102865088..102865107,+!p1@Hoxc4!1.00!12.04!Hoxc4;;chr3:95032197..95032208,-!p3@Mllt11!0.99!11.08!Mllt11;;chr2:162769220..162769252,+!p1@L3mbtl1!0.99!8.83!L3mbtl1;;chr11:96685487..96685512,-!p7@Nfe2l1!0.99!8.67!Nfe2l1;;chr14:122874619..122874634,+!p1@Zic2!0.99!8.67!Zic2;;chr14:104867201..104867258,-!p1@Pou4f1!0.98!12.04!Pou4f1;;chr11:98190918..98190951,-!p1@Neurod2!0.98!8.51!Neurod2;;chr6:145813905..145813932,-!p2@Bhlhe41!0.97!16.06!Bhlhe41;;chr7:38554763..38554780,-!p1@Zfp536!0.97!15.41!Zfp536;;chr2:65768174..65768247,+!p2@Csrnp3!0.95!7.87!Csrnp3;;chr11:90252223..90252240,-!p1@Hlf!0.94!67.11!Hlf;;chrX:108009761..108009788,+!p1@Pou3f4!0.94!7.71!Pou3f4;;chr11:98636531..98636559,-!p1@Nr1d1!0.93!44.47!Nr1d1;;chr10:84218895..84218909,+!p1@Rfx4!0.93!7.55!Rfx4;;chr3:34548909..34548927,+!p1@Sox2!0.92!12.68!Sox2;;chr3:95032558..95032641,-!p2@Mllt11!0.91!41.90!Mllt11;;chr2:25562263..25562314,+!p2@Bmyc!0.91!28.90!Bmyc;;chr12:72149325..72149343,+!p2@Arid4a!0.91!10.28!Arid4a;;chr2:151907546..151907561,+!p1@Scrt2!0.91!7.06!Scrt2;;chr6:134780163..134780197,+!p2@Crebl2!0.90!16.70!Crebl2;;chr2:163030186..163030204,+!p4@Tox2!0.89!6.74!Tox2;;chr9:106362954..106362977,+!p6@Pcbp4!0.88!6.58!Pcbp4;;chr13:44936126..44936164,+!p6@Jarid2!0.87!7.55!Jarid2;;chr2:127347094..127347111,-!p2@Kcnip3!0.86!10.60!Kcnip3;;chr6:52154386..52154407,-!p2@Hoxa5!0.86!8.03!Hoxa5;;chr3:101814061..101814094,+!p1@Nhlh2!0.86!6.26!Nhlh2;;chr12:30213247..30213333,+!p1@Myt1l!0.86!6.26!Myt1l;;chr9:106356278..106356292,+!p3@Pcbp4!0.85!10.76!Pcbp4;;chr10:80893711..80893784,-!p3@Nfic!0.84!33.07!Nfic;;chr6:117813087..117813121,+!p1@Zfp239!0.83!23.44!Zfp239;;chr15:103170516..103170531,-!p2@Zfp385a!0.83!14.29!Zfp385a;;chr8:112603658..112603674,+!p2@Zfp612!0.83!10.92!Zfp612;;chr2:168427120..168427138,-!p4@Nfatc2!0.83!5.78!Nfatc2;;chr3:54559496..54559511,+!p1@Smad9!0.82!13.17!Smad9;;chr11:90250944..90250982,-!p2@Hlf!0.82!9.63!Hlf;;chr11:96160426..96160443,+!p2@Hoxb6!0.82!5.62!Hoxb6;;chr14:34791937..34791977,-!p1@Zfp488!0.82!5.62!Zfp488;;chr11:70501419..70501483,-!p1@Camta2,p1@LOC100048818!0.81!60.69!Camta2;;chr14:19071466..19071550,-!p1@Nr1d2!0.81!39.66!Nr1d2;;chr8:12395603..12395621,+!p1@Sox1!0.81!5.46!Sox1;;chr11:116196664..116196679,-!p1@Foxj1!0.80!8.51!Foxj1;;chr7:91558472..91558512,-!p2@Arnt2!0.80!7.87!Arnt2;;chr2:163030164..163030178,+!p6@Tox2!0.80!5.30!Tox2;;chr6:55631042..55631102,-!p1@Neurod6!0.80!5.30!Neurod6;;chr17:27693525..27693538,+!p5@Hmga1!0.79!18.78!Hmga1;;chr19:26681865..26681900,+!p6@Smarca2!0.79!16.06!Smarca2;;chr14:52935860..52935874,-!p3@Sall2!0.79!7.71!Sall2;;chr2:81893535..81893548,+!p1@Zfp804a!0.79!5.14!Zfp804a;;chr4:150482353..150482386,-!p6@Camta1!0.79!5.14!Camta1;;chr15:95485240..95485257,-!p1@Dbx2!0.78!4.98!Dbx2;;chrX:137077151..137077227,-!p2@Tsc22d3!0.77!37.57!Tsc22d3;;chr6:52114821..52114828,-!p1@Hoxa2!0.76!7.39!Hoxa2;;chr2:77654815..77654872,-!p2@Zfp385b!0.76!6.10!Zfp385b;;chr12:87762578..87762612,+!p1@Esrrb!0.75!4.66!Esrrb;;chr11:96143843..96143868,+!p3@Hoxb8!0.75!4.66!Hoxb8;;chr2:65768149..65768173,+!p4@Csrnp3!0.75!4.66!Csrnp3;;chr7:17200307..17200370,-!p2@Grlf1!0.74!36.61!Grlf1;;chr7:38558544..38558566,-!p4@Zfp536!0.74!5.30!Zfp536;;chrX:55283799..55283813,+!p1@Zic3!0.74!4.50!Zic3;;chr2:181501745..181501778,+!p1@Myt1!0.74!4.50!Myt1;;chr2:147012101..147012118,-!p3@Nkx2-2!0.74!4.50!Nkx2-2;;chr11:96160403..96160416,+!p4@Hoxb6!0.74!4.50!Hoxb6;;chr16:91269972..91269978,+!p3@Olig1!0.74!4.50!Olig1;;chr8:112603610..112603656,+!p1@Zfp612!0.73!22.32!Zfp612;;chr3:95032184..95032195,-!p4@Mllt11!0.73!5.62!Mllt11;;chr11:90252071..90252093,-!p7@Hlf!0.73!4.33!Hlf;;chr11:96145450..96145517,+!p2@Hoxb7!0.71!6.58!Hoxb7;;chr15:103170561..103170572,-!p4@Zfp385a!0.71!6.26!Zfp385a;;chr11:96213264..96213282,+!p@chr11:96213264..96213282,+!0.71!5.30!Hoxb2;;chr11:96147952..96147967,+!p1@Hoxb7!0.71!5.30!Hoxb7;;chr8:107793737..107793757,+!p2@Hsf4!0.71!4.82!Hsf4;;chr15:102865131..102865151,+!p2@Hoxc4!0.71!4.82!Hoxc4;;chr7:91558537..91558558,-!p4@Arnt2!0.70!4.98!Arnt2;;chr11:84339016..84339044,-!p1@Lhx1!0.70!4.01!Lhx1;;chr2:79296783..79296801,-!p1@Neurod1!0.70!4.01!Neurod1;;chr19:26679615..26679646,+!p3@Smarca2!0.69!30.67!Smarca2;;chr10:30522690..30522752,-!p2@Ncoa7!0.69!26.97!Ncoa7;;chr15:81633139..81633152,+!p4@Tef!0.69!7.06!Tef;;chr13:72766279..72766296,+!p2@Irx2!0.69!6.10!Irx2;;chr12:72149359..72149406,+!p4@Arid4a!0.69!5.30!Arid4a;;chr19:19185697..19185711,-!p2@Rorb!0.69!5.14!Rorb;;chr14:122874593..122874610,+!p2@Zic2!0.69!3.85!Zic2;;chr5:77524250..77524300,-!p1@Hopx!0.68!88.62!Hopx;;chr6:53523358..53523388,+!p1@Creb5!0.67!51.22!Creb5;;chr15:10400245..10400282,-!p2@Dnajc21!0.67!13.81!Dnajc21;;chr14:76903992..76904056,+!p6@Tsc22d1!0.67!8.19!Tsc22d1;;chr7:38558574..38558611,-!p2@Zfp536!0.67!4.82!Zfp536;;chr7:122968213..122968266,-!p4@Sox6!0.67!4.50!Sox6;;chr2:151907338..151907360,+!p2@Scrt2!0.67!3.69!Scrt2;;chr10:67375342..67375365,-!p3@Zfp365!0.67!3.69!Zfp365;;chr11:96213288..96213332,+!p@chr11:96213288..96213332,+!0.66!6.58!Hoxb2;;chr13:99124189..99124205,+!p1@Foxd1!0.66!5.78!Foxd1;;chr4:154335024..154335039,+!p1@Hes5!0.66!4.50!Hes5;;chr12:3806003..3806031,+!p11@Dnmt3a!0.66!3.53!Dnmt3a;;chr11:96143728..96143745,+!p4@Hoxb8!0.66!3.53!Hoxb8;;chrX:95345005..95345053,+!p1@Ar!0.66!3.53!Ar;;chr7:130644017..130644092,-!p1@Zkscan2!0.65!7.39!Zkscan2;;chr6:72850124..72850210,-!p7@Kcmf1!0.65!4.82!Kcmf1;;chr6:145813964..145813994,-!p3@Bhlhe41!0.65!4.66!Bhlhe41;;chr4:22415443..22415506,-!p1@Pou3f2!0.64!3.37!Pou3f2;;chr15:76352832..76352900,-!p1@Scrt1!0.64!3.37!Scrt1;;chr15:102839912..102839938,+!p5@Hoxc6!0.64!3.37!Hoxc6;;chr2:181501710..181501742,+!p2@Myt1!0.64!3.37!Myt1;;chr2:44968737..44968758,-!p2@Zeb2!0.63!21.83!Zeb2;;chr8:79426176..79426275,+!p1@Nr3c2!0.63!19.11!Nr3c2;;chr9:20385868..20385902,+!p3@Zfp846!0.63!4.98!Zfp846;;chr15:103164702..103164778,-!p3@Zfp385a!0.63!4.01!Zfp385a;;chr14:118636214..118636235,-!p1@Sox21!0.63!4.01!Sox21;;chr12:100631220..100631300,-!p2@Foxn3!0.62!33.88!Foxn3;;chr18:36441100..36441113,+!p3@Pura!0.62!3.85!Pura;;chr1:19199236..19199258,+!p1@Tfap2b!0.62!3.21!Tfap2b;;chr2:74565247..74565258,+!p3@Hoxd4!0.62!3.21!Hoxd4;;chr2:74583776..74583815,+!p3@Hoxd3!0.62!3.21!Hoxd3;;chr7:17062114..17062141,-!p1@Npas1!0.62!3.21!Npas1;;chr5:98609885..98609900,+!p1@Prdm8!0.62!3.21!Prdm8;;chr6:52158644..52158677,-!p2@Hoxa6!0.62!3.21!Hoxa6;;chr3:32264565..32264613,-!p1@Zmat3!0.61!40.94!Zmat3;;chr14:76904356..76904367,+!p3@Tsc22d1!0.61!26.49!Tsc22d1;;chr13:64253718..64253763,-!p2@Zfp367!0.61!9.15!Zfp367;;chr19:23215554..23215567,+!p5@Klf9!0.61!4.50!Klf9;;chr14:33412570..33412586,+!p1@Prrxl1!0.61!3.05!Prrxl1;;chr13:44936077..44936096,+!p9@Jarid2!0.61!3.05!Jarid2;;chr3:34549096..34549111,+!p3@Sox2!0.61!3.05!Sox2;;chr7:52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| ||
Line 42: | Line 44: | ||
|is_a=EFO:0002091;;FF:0011284 | |is_a=EFO:0002091;;FF:0011284 | ||
|is_obsolete= | |is_obsolete= | ||
| | |library_id=CNhs10477 | ||
|library_id_phase_based=2:CNhs10477 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;17 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;17 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/medulla%2520oblongata%252c%2520adult.CNhs10477.17-12C2.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/medulla%2520oblongata%252c%2520adult.CNhs10477.17-12C2.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/medulla%2520oblongata%252c%2520adult.CNhs10477.17-12C2.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/medulla%2520oblongata%252c%2520adult.CNhs10477.17-12C2.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/medulla%2520oblongata%252c%2520adult.CNhs10477.17-12C2.mm9.nobarcode.rdna.fa.gz | |||
|name=medulla oblongata, adult | |name=medulla oblongata, adult | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 48: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10477,LSID646,release008,COMPLETED | |profile_hcage=CNhs10477,LSID646,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|repeat_enrich_byfamily=0.076339866300382,0,0,0,0,0,-0.05272224564925,0,0.030936709486621,0,0,-0.0843392403965415,0,0,0,0,0,0,-0.0211472067224795,0,0,0,0,0,0.170746144160095,0,0,0,0,0,0,0,-0.493758715628899,0,0,0,0,0.0327134645401244,-0.0813546180496645,0.149433103813338,-0.182629039615701,0.403896696646389,0.856015681534086,0,0,0.170746144160095,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,0.0218171216122575,0,0.0323320383475661,0,0,0,-0.0569217626770165,-0.0176632077016166,0.308273376107523,-0.00064230896796749,0,0,0.101871956563477,0,0,0,0.0544723134119831,0.0715158543496048,0.0447218001602192,-0.0788315948399074,0,0,0,0,0,0,-0.020444838171606,-0.1216930865379,0.0458563641780491,0,0,0.589939622461393,0,0 | |repeat_enrich_byfamily=0.076339866300382,0,0,0,0,0,-0.05272224564925,0,0.030936709486621,0,0,-0.0843392403965415,0,0,0,0,0,0,-0.0211472067224795,0,0,0,0,0,0.170746144160095,0,0,0,0,0,0,0,-0.493758715628899,0,0,0,0,0.0327134645401244,-0.0813546180496645,0.149433103813338,-0.182629039615701,0.403896696646389,0.856015681534086,0,0,0.170746144160095,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,0.0218171216122575,0,0.0323320383475661,0,0,0,-0.0569217626770165,-0.0176632077016166,0.308273376107523,-0.00064230896796749,0,0,0.101871956563477,0,0,0,0.0544723134119831,0.0715158543496048,0.0447218001602192,-0.0788315948399074,0,0,0,0,0,0,-0.020444838171606,-0.1216930865379,0.0458563641780491,0,0,0.589939622461393,0,0 | ||
Line 85: | Line 97: | ||
|top_motifs=NHLH1,2:2.67636273016;REST:2.67561755249;MTF1:2.65690113187;MYFfamily:2.5504380876;ATF2:2.51142694285;ZBTB6:2.49752753;PRRX1,2:2.28835787305;POU6F1:2.28291416293;NFE2L2:2.20003191704;CUX2:2.18177459549;AHR_ARNT_ARNT2:2.00819131793;PBX1:1.9680878717;FOX{I1,J2}:1.90377887503;BREu{core}:1.84633056573;LMO2:1.84558750464;RBPJ:1.81166310276;MED-1{core}:1.80447510619;ZFP161:1.79449930219;SREBF1,2:1.74488386194;HIC1:1.74244644069;TFAP2B:1.72664414186;RORA:1.72210157466;GFI1B:1.70559118388;FOXM1:1.68916068862;PAX5:1.68466043766;SMAD1..7,9:1.6452088973;STAT1,3:1.63476775927;HAND1,2:1.60769426834;MAFB:1.57972324734;JUN:1.57209711833;EGR1..3:1.50071283956;HBP1_HMGB_SSRP1_UBTF:1.49292638723;FOXD3:1.45817276374;TGIF1:1.43600884498;ZIC1..3:1.39500327766;NRF1:1.36980753157;KLF4:1.36400702741;OCT4_SOX2{dimer}:1.35061254582;TFAP2{A,C}:1.29694731861;NFIL3:1.27590849415;ZNF143:1.2591775161;POU3F1..4:1.25727320022;GTF2A1,2:1.22332994723;NANOG:1.20881013206;MTE{core}:1.2008703309;ADNP_IRX_SIX_ZHX:1.19885548403;RFX1:1.17715965597;TFDP1:1.15562068845;GTF2I:1.13198072661;ATF5_CREB3:1.09557640546;CREB1:1.09405626015;PAX6:1.09161356993;SOX2:1.08072027451;ZEB1:1.04719639703;PRDM1:1.00054892399;IKZF1:0.962730062075;DBP:0.961037005899;NR3C1:0.959773160341;PATZ1:0.943235275765;PPARG:0.895092899295;GZF1:0.884112835009;HSF1,2:0.876553884136;MZF1:0.869939409631;FOXN1:0.859444916459;YY1:0.781200560462;HES1:0.770204468295;ZNF423:0.740608890476;PAX2:0.712525238608;RREB1:0.675531520697;HOXA9_MEIS1:0.635377869113;NKX3-2:0.632658049702;MAZ:0.626391602634;NFE2:0.602376342605;SOX{8,9,10}:0.597831486945;MYOD1:0.593956616527;EVI1:0.58106081171;RFX2..5_RFXANK_RFXAP:0.57388237558;SP1:0.557207441697;SOX5:0.542594166186;TFAP4:0.542575168216;VSX1,2:0.511954635765;LEF1_TCF7_TCF7L1,2:0.491892965041;TFCP2:0.467221172462;NFATC1..3:0.45923369223;ONECUT1,2:0.444539755419;FOXP3:0.440345084598;NR5A1,2:0.433736673978;PAX4:0.417888727084;FOX{F1,F2,J1}:0.335240211209;UFEwm:0.330936529227;POU5F1:0.329709144831;NKX2-2,8:0.267697371268;HMGA1,2:0.247275879002;TLX1..3_NFIC{dimer}:0.227244122849;GATA4:0.224840252944;GCM1,2:0.222112281417;ARID5B:0.187036776623;PAX8:0.180269575006;MYBL2:0.179379299104;bHLH_family:0.176840858896;SOX17:0.17490837544;HOX{A5,B5}:0.173924110368;TAL1_TCF{3,4,12}:0.100213802426;ESRRA:0.0977852954712;PDX1:0.0767202608519;FOXA2:0.0308865048417;ATF6:0.00940418073869;CDX1,2,4:0.00564835725774;ATF4:-0.00461207528196;EBF1:-0.0100906062953;NFE2L1:-0.0113205738144;TOPORS:-0.0554385398331;HMX1:-0.0567860707663;EP300:-0.067624061316;HIF1A:-0.0853496556917;STAT2,4,6:-0.0909668712804;LHX3,4:-0.0992660811385;BPTF:-0.0994441882718;GLI1..3:-0.136877012675;ALX1:-0.142702155058;NKX6-1,2:-0.147742164394;XCPE1{core}:-0.173800917891;AR:-0.173824964896;SPZ1:-0.195564744042;BACH2:-0.197370771172;NKX2-1,4:-0.223189393196;HOX{A4,D4}:-0.243034824027;ESR1:-0.250962942897;FOXQ1:-0.263631472163;T:-0.277529868605;SNAI1..3:-0.286586052388;NFY{A,B,C}:-0.296204920393;FOSL2:-0.334695835187;FOXP1:-0.359616410952;HLF:-0.382350479192;NANOG{mouse}:-0.39611977322;CRX:-0.404558320937;ZNF384:-0.415597329481;ZNF148:-0.438076047435;TBX4,5:-0.440003315799;MEF2{A,B,C,D}:-0.509616669281;ELK1,4_GABP{A,B1}:-0.53004124186;TEF:-0.558081282733;AIRE:-0.559586452344;RXR{A,B,G}:-0.596530133152;FOX{D1,D2}:-0.597567769319;TP53:-0.601916070386;IRF7:-0.621520853046;ZNF238:-0.659767851472;SPI1:-0.703952952208;GATA6:-0.711390676998;CEBPA,B_DDIT3:-0.723897396393;NKX2-3_NKX2-5:-0.731315055817;ZBTB16:-0.759643280331;MYB:-0.799480719927;RUNX1..3:-0.807443767433;FOS_FOS{B,L1}_JUN{B,D}:-0.818187744349;FOXO1,3,4:-0.81832656457;IRF1,2:-0.820255013784;EN1,2:-0.836930404192;HNF4A_NR2F1,2:-0.859509804282;TEAD1:-0.883186465984;NKX3-1:-0.918311036223;ETS1,2:-0.921752324478;HNF1A:-0.924675943703;CDC5L:-0.932478571949;NFIX:-0.936667045176;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.941404620104;POU1F1:-0.94319224142;NFKB1_REL_RELA:-1.0217057249;PAX1,9:-1.06940001798;ELF1,2,4:-1.12252286616;GFI1:-1.1309717689;NR1H4:-1.1314559655;POU2F1..3:-1.18224878798;NR6A1:-1.36325195743;SRF:-1.4136816552;TBP:-1.42410948257;IKZF2:-1.46465159373;DMAP1_NCOR{1,2}_SMARC:-1.49684320273;FOXL1:-1.51171945714;SPIB:-1.51344238262;E2F1..5:-1.5764372603;RXRA_VDR{dimer}:-1.5764833461;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.61933179191;PITX1..3:-1.76329231482;STAT5{A,B}:-1.77860660771;ALX4:-1.861206364;TLX2:-1.97291258952 | |top_motifs=NHLH1,2:2.67636273016;REST:2.67561755249;MTF1:2.65690113187;MYFfamily:2.5504380876;ATF2:2.51142694285;ZBTB6:2.49752753;PRRX1,2:2.28835787305;POU6F1:2.28291416293;NFE2L2:2.20003191704;CUX2:2.18177459549;AHR_ARNT_ARNT2:2.00819131793;PBX1:1.9680878717;FOX{I1,J2}:1.90377887503;BREu{core}:1.84633056573;LMO2:1.84558750464;RBPJ:1.81166310276;MED-1{core}:1.80447510619;ZFP161:1.79449930219;SREBF1,2:1.74488386194;HIC1:1.74244644069;TFAP2B:1.72664414186;RORA:1.72210157466;GFI1B:1.70559118388;FOXM1:1.68916068862;PAX5:1.68466043766;SMAD1..7,9:1.6452088973;STAT1,3:1.63476775927;HAND1,2:1.60769426834;MAFB:1.57972324734;JUN:1.57209711833;EGR1..3:1.50071283956;HBP1_HMGB_SSRP1_UBTF:1.49292638723;FOXD3:1.45817276374;TGIF1:1.43600884498;ZIC1..3:1.39500327766;NRF1:1.36980753157;KLF4:1.36400702741;OCT4_SOX2{dimer}:1.35061254582;TFAP2{A,C}:1.29694731861;NFIL3:1.27590849415;ZNF143:1.2591775161;POU3F1..4:1.25727320022;GTF2A1,2:1.22332994723;NANOG:1.20881013206;MTE{core}:1.2008703309;ADNP_IRX_SIX_ZHX:1.19885548403;RFX1:1.17715965597;TFDP1:1.15562068845;GTF2I:1.13198072661;ATF5_CREB3:1.09557640546;CREB1:1.09405626015;PAX6:1.09161356993;SOX2:1.08072027451;ZEB1:1.04719639703;PRDM1:1.00054892399;IKZF1:0.962730062075;DBP:0.961037005899;NR3C1:0.959773160341;PATZ1:0.943235275765;PPARG:0.895092899295;GZF1:0.884112835009;HSF1,2:0.876553884136;MZF1:0.869939409631;FOXN1:0.859444916459;YY1:0.781200560462;HES1:0.770204468295;ZNF423:0.740608890476;PAX2:0.712525238608;RREB1:0.675531520697;HOXA9_MEIS1:0.635377869113;NKX3-2:0.632658049702;MAZ:0.626391602634;NFE2:0.602376342605;SOX{8,9,10}:0.597831486945;MYOD1:0.593956616527;EVI1:0.58106081171;RFX2..5_RFXANK_RFXAP:0.57388237558;SP1:0.557207441697;SOX5:0.542594166186;TFAP4:0.542575168216;VSX1,2:0.511954635765;LEF1_TCF7_TCF7L1,2:0.491892965041;TFCP2:0.467221172462;NFATC1..3:0.45923369223;ONECUT1,2:0.444539755419;FOXP3:0.440345084598;NR5A1,2:0.433736673978;PAX4:0.417888727084;FOX{F1,F2,J1}:0.335240211209;UFEwm:0.330936529227;POU5F1:0.329709144831;NKX2-2,8:0.267697371268;HMGA1,2:0.247275879002;TLX1..3_NFIC{dimer}:0.227244122849;GATA4:0.224840252944;GCM1,2:0.222112281417;ARID5B:0.187036776623;PAX8:0.180269575006;MYBL2:0.179379299104;bHLH_family:0.176840858896;SOX17:0.17490837544;HOX{A5,B5}:0.173924110368;TAL1_TCF{3,4,12}:0.100213802426;ESRRA:0.0977852954712;PDX1:0.0767202608519;FOXA2:0.0308865048417;ATF6:0.00940418073869;CDX1,2,4:0.00564835725774;ATF4:-0.00461207528196;EBF1:-0.0100906062953;NFE2L1:-0.0113205738144;TOPORS:-0.0554385398331;HMX1:-0.0567860707663;EP300:-0.067624061316;HIF1A:-0.0853496556917;STAT2,4,6:-0.0909668712804;LHX3,4:-0.0992660811385;BPTF:-0.0994441882718;GLI1..3:-0.136877012675;ALX1:-0.142702155058;NKX6-1,2:-0.147742164394;XCPE1{core}:-0.173800917891;AR:-0.173824964896;SPZ1:-0.195564744042;BACH2:-0.197370771172;NKX2-1,4:-0.223189393196;HOX{A4,D4}:-0.243034824027;ESR1:-0.250962942897;FOXQ1:-0.263631472163;T:-0.277529868605;SNAI1..3:-0.286586052388;NFY{A,B,C}:-0.296204920393;FOSL2:-0.334695835187;FOXP1:-0.359616410952;HLF:-0.382350479192;NANOG{mouse}:-0.39611977322;CRX:-0.404558320937;ZNF384:-0.415597329481;ZNF148:-0.438076047435;TBX4,5:-0.440003315799;MEF2{A,B,C,D}:-0.509616669281;ELK1,4_GABP{A,B1}:-0.53004124186;TEF:-0.558081282733;AIRE:-0.559586452344;RXR{A,B,G}:-0.596530133152;FOX{D1,D2}:-0.597567769319;TP53:-0.601916070386;IRF7:-0.621520853046;ZNF238:-0.659767851472;SPI1:-0.703952952208;GATA6:-0.711390676998;CEBPA,B_DDIT3:-0.723897396393;NKX2-3_NKX2-5:-0.731315055817;ZBTB16:-0.759643280331;MYB:-0.799480719927;RUNX1..3:-0.807443767433;FOS_FOS{B,L1}_JUN{B,D}:-0.818187744349;FOXO1,3,4:-0.81832656457;IRF1,2:-0.820255013784;EN1,2:-0.836930404192;HNF4A_NR2F1,2:-0.859509804282;TEAD1:-0.883186465984;NKX3-1:-0.918311036223;ETS1,2:-0.921752324478;HNF1A:-0.924675943703;CDC5L:-0.932478571949;NFIX:-0.936667045176;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.941404620104;POU1F1:-0.94319224142;NFKB1_REL_RELA:-1.0217057249;PAX1,9:-1.06940001798;ELF1,2,4:-1.12252286616;GFI1:-1.1309717689;NR1H4:-1.1314559655;POU2F1..3:-1.18224878798;NR6A1:-1.36325195743;SRF:-1.4136816552;TBP:-1.42410948257;IKZF2:-1.46465159373;DMAP1_NCOR{1,2}_SMARC:-1.49684320273;FOXL1:-1.51171945714;SPIB:-1.51344238262;E2F1..5:-1.5764372603;RXRA_VDR{dimer}:-1.5764833461;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.61933179191;PITX1..3:-1.76329231482;STAT5{A,B}:-1.77860660771;ALX4:-1.861206364;TLX2:-1.97291258952 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:17-12C2;search_select_hide=table117:17-12C2 | |||
| | |||
}} | }} |
Latest revision as of 19:08, 4 June 2020
Name: | medulla oblongata, adult |
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Species: | Mouse (Mus musculus) |
Library ID: | CNhs10477 |
Sample type: | developmental |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs10477
0 | 0 |
1 | 0.728 |
10 | 0 |
100 | 0 |
1000 | 0.0138 |
1001 | 0.0534 |
1002 | 0 |
1003 | 0.0884 |
1004 | 0 |
1005 | 0.0863 |
1006 | 0.61 |
1007 | -0.0594 |
1008 | 0 |
1009 | -0.0691 |
101 | -0.0826 |
1010 | 0 |
1011 | 0.423 |
1012 | 0.0647 |
1013 | 0.295 |
1014 | -0.0299 |
1015 | -0.135 |
1016 | -0.153 |
1017 | 0 |
1018 | 0 |
1019 | 0 |
102 | 0 |
1020 | 0 |
1021 | 0 |
1022 | 0.0505 |
1023 | 0 |
1024 | 0.203 |
1025 | 0.0598 |
1026 | 0 |
1027 | 0.443 |
1028 | 0 |
1029 | -0.00378 |
103 | -0.0813 |
1030 | 0 |
1031 | -0.304 |
1032 | 0.457 |
1033 | -0.0105 |
1034 | 0 |
1035 | 0 |
1036 | -0.279 |
1037 | 0 |
1038 | -0.112 |
1039 | 0.181 |
104 | 0 |
1040 | -0.151 |
1041 | 0 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10477
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10477
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.259 |
10 | 10 | 0.0434 |
100 | 100 | 0.254 |
101 | 101 | 0.859 |
102 | 102 | 0.996 |
103 | 103 | 0.0897 |
104 | 104 | 0.999 |
105 | 105 | 0.644 |
106 | 106 | 0.0355 |
107 | 107 | 0.146 |
108 | 108 | 0.54 |
109 | 109 | 0.0262 |
11 | 11 | 0.138 |
110 | 110 | 0.0339 |
111 | 111 | 0.232 |
112 | 112 | 0.0129 |
113 | 113 | 0.451 |
114 | 114 | 0.516 |
115 | 115 | 0.915 |
116 | 116 | 0.274 |
117 | 117 | 0.00243 |
118 | 118 | 0.197 |
119 | 119 | 0.255 |
12 | 12 | 0.762 |
120 | 120 | 0.891 |
121 | 121 | 0.683 |
122 | 122 | 0.746 |
123 | 123 | 2.19989e-4 |
124 | 124 | 0.0206 |
125 | 125 | 0.123 |
126 | 126 | 0.0246 |
127 | 127 | 0.186 |
128 | 128 | 0.0529 |
129 | 129 | 0.356 |
13 | 13 | 1.87954e-7 |
130 | 130 | 0.179 |
131 | 131 | 0.571 |
132 | 132 | 0.723 |
133 | 133 | 0.678 |
134 | 134 | 0.214 |
135 | 135 | 0.0713 |
136 | 136 | 0.294 |
137 | 137 | 0.713 |
138 | 138 | 0.695 |
139 | 139 | 0.251 |
14 | 14 | 0.634 |
140 | 140 | 0.101 |
141 | 141 | 0.95 |
142 | 142 | 0.572 |
143 | 143 | 0.314 |
144 | 144 | 0.982 |
145 | 145 | 8.44091e-5 |
146 | 146 | 0.498 |
147 | 147 | 0.363 |
148 | 148 | 0.935 |
149 | 149 | 0.848 |
15 | 15 | 0.198 |
150 | 150 | 0.0691 |
151 | 151 | 0.94 |
152 | 152 | 0.166 |
153 | 153 | 0.845 |
154 | 154 | 0.719 |
155 | 155 | 0.416 |
156 | 156 | 0.00972 |
157 | 157 | 0.27 |
158 | 158 | 0.297 |
159 | 159 | 0.67 |
160 | 160 | 0.237 |
161 | 161 | 0.327 |
162 | 162 | 0.773 |
163 | 163 | 0.612 |
164 | 164 | 0.0329 |
165 | 165 | 0.544 |
166 | 166 | 0.446 |
167 | 167 | 0.922 |
168 | 168 | 0.782 |
169 | 169 | 0.00432 |
17 | 17 | 0.0895 |
18 | 18 | 0.927 |
19 | 19 | 0.185 |
2 | 2 | 0.589 |
20 | 20 | 0.0127 |
21 | 21 | 0.189 |
22 | 22 | 0.225 |
23 | 23 | 0.831 |
24 | 24 | 0.115 |
25 | 25 | 0.786 |
26 | 26 | 5.54404e-10 |
27 | 27 | 0.283 |
28 | 28 | 0.853 |
29 | 29 | 0.0272 |
3 | 3 | 0.098 |
30 | 30 | 0.799 |
31 | 31 | 0.715 |
32 | 32 | 0.65 |
33 | 33 | 0.201 |
34 | 34 | 0.908 |
35 | 35 | 0.952 |
36 | 36 | 0.168 |
37 | 37 | 0.0703 |
38 | 38 | 0.527 |
39 | 39 | 0.403 |
4 | 4 | 0.22 |
40 | 40 | 0.154 |
41 | 41 | 0.535 |
42 | 42 | 0.238 |
43 | 43 | 0.132 |
44 | 44 | 0.504 |
45 | 45 | 0.777 |
46 | 46 | 0.034 |
47 | 47 | 0.634 |
48 | 48 | 0.418 |
49 | 49 | 0.137 |
5 | 5 | 0.193 |
50 | 50 | 0.298 |
51 | 51 | 0.757 |
52 | 52 | 0.4 |
53 | 53 | 0.27 |
54 | 54 | 0.966 |
55 | 55 | 0.807 |
56 | 56 | 0.64 |
57 | 57 | 0.475 |
58 | 58 | 0.342 |
59 | 59 | 0.169 |
6 | 6 | 0.981 |
60 | 60 | 0.0461 |
61 | 61 | 0.0735 |
62 | 62 | 0.229 |
63 | 63 | 0.197 |
64 | 64 | 0.741 |
65 | 65 | 0.427 |
66 | 66 | 0.802 |
67 | 67 | 0.857 |
68 | 68 | 0.31 |
69 | 69 | 0.655 |
7 | 7 | 0.0184 |
70 | 70 | 0.1 |
71 | 71 | 0.00221 |
72 | 72 | 0.633 |
73 | 73 | 0.0748 |
74 | 74 | 0.805 |
75 | 75 | 0.0558 |
76 | 76 | 0.198 |
77 | 77 | 0.563 |
78 | 78 | 0.0022 |
79 | 79 | 0.213 |
8 | 8 | 0.0476 |
80 | 80 | 0.976 |
81 | 81 | 0.542 |
82 | 82 | 0.372 |
83 | 83 | 0.401 |
84 | 84 | 0.874 |
85 | 85 | 0.299 |
86 | 86 | 0.149 |
87 | 87 | 0.746 |
88 | 88 | 0.61 |
89 | 89 | 0.712 |
9 | 9 | 0.538 |
90 | 90 | 0.103 |
91 | 91 | 0.0778 |
92 | 92 | 0.387 |
93 | 93 | 0.129 |
94 | 94 | 0.585 |
95 | 95 | 0.107 |
96 | 96 | 0.515 |
97 | 97 | 0.92 |
98 | 98 | 0.702 |
99 | 99 | 0.61 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10477
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001896 (medulla oblongata)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0004733 (segmental subdivision of hindbrain)
0004732 (segmental subdivision of nervous system)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0002298 (brainstem)
0002028 (hindbrain)
0005290 (myelencephalon)
FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0011284 (mouse medulla oblongata- adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)