FFCP PHASE1:Mm9::chr9:44946845..44946852,+: Difference between revisions
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{{FFCP|EntrezGene=399548|HGNC=|MCL_coexpression_id=955|UniProt=Q1MXF9,Q7M729|association_with_transcript=-272bp_to_NM_001013390,uc009pfh.1_5end|description=CAGE_peak_12_at_Scn4b_5end|id=chr9:44946845..44946852,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0002610,1.58e-20,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002298!1.74e-09!6;UBERON:0007811!4.67e-09!86;UBERON:0002616!1.04e-07!49;UBERON:0000153!1.63e-07!94;UBERON:0000955!1.95e-07!50;UBERON:0006238!1.95e-07!50|ontology_enrichment_uberon_v019_2=UBERON:0004684,1.58e-20,3;UBERON:0002275,1.58e-20,3;UBERON:0001896,3.45e-15,2;UBERON:0002298,3.45e-15,2;UBERON:0005290,3.45e-15,2;UBERON:0010096,3.45e-15,2;UBERON:0000073,1.65e-11,54;UBERON:0001017,3.65e-10,73;UBERON:0001016,7.32e-10,75;UBERON:0004121,3.86e-09,95;UBERON:0000924,3.86e-09,95;UBERON:0006601,3.86e-09,95;UBERON:0001374,2.54e-08,1;UBERON:0004252,2.54e-08,1;UBERON:0003663,2.54e-08,1;UBERON:0005090,2.54e-08,1;UBERON:0001630,2.54e-08,1;UBERON:0003661,2.54e-08,1;UBERON:0010890,2.54e-08,1;UBERON:0001383,2.54e-08,1;UBERON:0001723,3.50e-08,1;UBERON:0001033,3.50e-08,1;UBERON:0010056,3.50e-08,1;UBERON:0002259,4.80e-08,1;UBERON:0002314,4.80e-08,1;UBERON:0004061,4.80e-08,1;UBERON:0006777,4.80e-08,1;UBERON:0005882,4.80e-08,1;UBERON:0002950,9.02e-08,4;UBERON:0001891,9.02e-08,4;UBERON:0009616,9.02e-08,4;UBERON:0010286,9.02e-08,4;UBERON:0001049,1.03e-07,52;UBERON:0005068,1.03e-07,52;UBERON:0006241,1.03e-07,52;UBERON:0007135,1.03e-07,52|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257259436035947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220868540951614,0,0,0,2.20231761998777,1.14918604276669,1.68967186581868,0,0,0,3.07101298901519,0.56276261003168,0.763991238884051,0,0.284743361598206,0,0,0.0755715601067855,0,0,0,0,0,0,0.842666520790511,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.884610551949874,0.647067399789637,0.441683036920787,0,0,0.292780797011547,0.209446706813455,0,0,0,0,1.79748767285787,0.915001205637253,0,0.521472960576829,0.767146371990992,1.45451631191692,1.29793010454206,0,0.373220911830279,0,0,0,0,0,0,0,0,0,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146199987425332,0,0,0.210289948564127,0,0,0,0,0,0,0,0,0,0,0,0,0.198956472041151,0,0,0,0,0,0,0,0,0,0.140271639780637,0.316182685621286,0.147610147979602,0.31399745568275,0.616985819609003,0,0,0,0,0,0,0,0.287696137450811,0,0,0,0,0,0.252578877947112,0.179397413521912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.17431533968259,4.10240903072711,0,3.53459298086122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307435147943927,0,0,0,0,0,0,0,0,0,0,0,0,0,0.304464949114599,0,0,0,0.32977250588296,0,0.0603129249281559,0.119372344003136,0.164140899745061,0,4.45020724825223,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288030006257865,0.316011120628178,0,0,0.25984164595559,0.179026695667481,0,0.360586348559907,0.147689527174577,0.100966449948148,0.0762068066549998,0.201652370273681,0.38983152295901,0.192423683280659,0.233753804363138,2.26730383615211,0,0,0,0,0,0.183151624267265,0,0,0.564751842617067,0,1.14579102687879,0,0,0,0,0.45032120322422,0,0.51776031175182,0,0,0.170733605754134,0,0,0,0,0,0.320919209591815,0,0,0,0,0.192075457214608,0,0,0,0,0.412085900803307,0,0,0,0.238436189947321,0,0.188218760830661,0.0846146078916765,0.365855945745545,0,0,0,0.118635018124174,0,0,0,0,0,0,0,0,0.441182838239031,0.463735671240843|short_description=p12@Scn4b}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=399548 | |||
|HGNC= | |||
|MCL_coexpression_id=955 | |||
|TSSclassifier=NA | |||
|UniProt=Q1MXF9,Q7M729 | |||
|association_with_transcript=-272bp_to_NM_001013390,uc009pfh.1_5end | |||
|cluster_id=chr9:44946845..44946852,+ | |||
|description=CAGE_peak_12_at_Scn4b_5end | |||
|id=chr9:44946845..44946852,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0002610,1.58e-20,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002298!1.74e-09!6;UBERON:0007811!4.67e-09!86;UBERON:0002616!1.04e-07!49;UBERON:0000153!1.63e-07!94;UBERON:0000955!1.95e-07!50;UBERON:0006238!1.95e-07!50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004684,1.58e-20,3;UBERON:0002275,1.58e-20,3;UBERON:0001896,3.45e-15,2;UBERON:0002298,3.45e-15,2;UBERON:0005290,3.45e-15,2;UBERON:0010096,3.45e-15,2;UBERON:0000073,1.65e-11,54;UBERON:0001017,3.65e-10,73;UBERON:0001016,7.32e-10,75;UBERON:0004121,3.86e-09,95;UBERON:0000924,3.86e-09,95;UBERON:0006601,3.86e-09,95;UBERON:0001374,2.54e-08,1;UBERON:0004252,2.54e-08,1;UBERON:0003663,2.54e-08,1;UBERON:0005090,2.54e-08,1;UBERON:0001630,2.54e-08,1;UBERON:0003661,2.54e-08,1;UBERON:0010890,2.54e-08,1;UBERON:0001383,2.54e-08,1;UBERON:0001723,3.50e-08,1;UBERON:0001033,3.50e-08,1;UBERON:0010056,3.50e-08,1;UBERON:0002259,4.80e-08,1;UBERON:0002314,4.80e-08,1;UBERON:0004061,4.80e-08,1;UBERON:0006777,4.80e-08,1;UBERON:0005882,4.80e-08,1;UBERON:0002950,9.02e-08,4;UBERON:0001891,9.02e-08,4;UBERON:0009616,9.02e-08,4;UBERON:0010286,9.02e-08,4;UBERON:0001049,1.03e-07,52;UBERON:0005068,1.03e-07,52;UBERON:0006241,1.03e-07,52;UBERON:0007135,1.03e-07,52 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257259436035947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220868540951614,0,0,0,2.20231761998777,1.14918604276669,1.68967186581868,0,0,0,3.07101298901519,0.56276261003168,0.763991238884051,0,0.284743361598206,0,0,0.0755715601067855,0,0,0,0,0,0,0.842666520790511,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.884610551949874,0.647067399789637,0.441683036920787,0,0,0.292780797011547,0.209446706813455,0,0,0,0,1.79748767285787,0.915001205637253,0,0.521472960576829,0.767146371990992,1.45451631191692,1.29793010454206,0,0.373220911830279,0,0,0,0,0,0,0,0,0,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146199987425332,0,0,0.210289948564127,0,0,0,0,0,0,0,0,0,0,0,0,0.198956472041151,0,0,0,0,0,0,0,0,0,0.140271639780637,0.316182685621286,0.147610147979602,0.31399745568275,0.616985819609003,0,0,0,0,0,0,0,0.287696137450811,0,0,0,0,0,0.252578877947112,0.179397413521912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.17431533968259,4.10240903072711,0,3.53459298086122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307435147943927,0,0,0,0,0,0,0,0,0,0,0,0,0,0.304464949114599,0,0,0,0.32977250588296,0,0.0603129249281559,0.119372344003136,0.164140899745061,0,4.45020724825223,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288030006257865,0.316011120628178,0,0,0.25984164595559,0.179026695667481,0,0.360586348559907,0.147689527174577,0.100966449948148,0.0762068066549998,0.201652370273681,0.38983152295901,0.192423683280659,0.233753804363138,2.26730383615211,0,0,0,0,0,0.183151624267265,0,0,0.564751842617067,0,1.14579102687879,0,0,0,0,0.45032120322422,0,0.51776031175182,0,0,0.170733605754134,0,0,0,0,0,0.320919209591815,0,0,0,0,0.192075457214608,0,0,0,0,0.412085900803307,0,0,0,0.238436189947321,0,0.188218760830661,0.0846146078916765,0.365855945745545,0,0,0,0.118635018124174,0,0,0,0,0,0,0,0,0.441182838239031,0.463735671240843 | |||
|short_description=p12@Scn4b | |||
}} |
Latest revision as of 17:34, 26 September 2015
Short description: | p12@Scn4b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_12_at_Scn4b_5end |
Coexpression cluster: | MCL_coexpression_mm9:955 |
Association with transcript: | -272bp_to_NM_001013390, uc009pfh.1_5end |
EntrezGene: | Scn4b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
raphe nuclei neuron | 1.58e-20 | 3 |
Ontology term | p-value | n |
---|---|---|
raphe nuclei | 1.58e-20 | 3 |
reticular formation | 1.58e-20 | 3 |
medulla oblongata | 3.45e-15 | 2 |
brainstem | 3.45e-15 | 2 |
myelencephalon | 3.45e-15 | 2 |
future myelencephalon | 3.45e-15 | 2 |
regional part of nervous system | 1.65e-11 | 54 |
central nervous system | 3.65e-10 | 73 |
nervous system | 7.32e-10 | 75 |
ectoderm-derived structure | 3.86e-09 | 95 |
ectoderm | 3.86e-09 | 95 |
presumptive ectoderm | 3.86e-09 | 95 |
biceps femoris | 2.54e-08 | 1 |
hindlimb stylopod muscle | 2.54e-08 | 1 |
hindlimb muscle | 2.54e-08 | 1 |
muscle structure | 2.54e-08 | 1 |
muscle organ | 2.54e-08 | 1 |
limb muscle | 2.54e-08 | 1 |
pelvic complex muscle | 2.54e-08 | 1 |
muscle of leg | 2.54e-08 | 1 |
tongue | 3.50e-08 | 1 |
gustatory system | 3.50e-08 | 1 |
future tongue | 3.50e-08 | 1 |
corpora quadrigemina | 4.80e-08 | 1 |
midbrain tectum | 4.80e-08 | 1 |
neural tube mantle layer | 4.80e-08 | 1 |
tectal plate | 4.80e-08 | 1 |
neural tube alar plate | 4.80e-08 | 1 |
regional part of midbrain | 9.02e-08 | 4 |
midbrain | 9.02e-08 | 4 |
presumptive midbrain | 9.02e-08 | 4 |
midbrain neural tube | 9.02e-08 | 4 |
neural tube | 1.03e-07 | 52 |
neural rod | 1.03e-07 | 52 |
future spinal cord | 1.03e-07 | 52 |
neural keel | 1.03e-07 | 52 |