FFCP PHASE1:Mm9::chr9:108957395..108957415,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=66940|HGNC=|MCL_coexpression_id=1|UniProt=Q9D7I0|association_with_transcript=-9bp_to_NM_026381,uc009rrq.1_5end|description=CAGE_peak_9_at_Shisa5_5end|id=chr9:108957395..108957415,+|ontology_enrichment_celltype=CL:0000221!6.42e-10!44;CL:0000133!6.42e-10!44;CL:0002319!9.61e-10!43;CL:0000117!1.62e-09!23;CL:0000337!1.62e-09!23;CL:0000055!1.55e-07!50;CL:0002321!8.76e-07!70;CL:0000220!8.76e-07!70|ontology_enrichment_celltype_v019_2=CL:0000117,2.35e-11,23;CL:0000337,2.35e-11,23;CL:0002319,1.17e-08,43;CL:0000221,2.76e-08,44;CL:0000133,2.76e-08,44;CL:0002321,7.78e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!4.74e-22!75;UBERON:0001016!4.74e-22!75;UBERON:0001017!2.22e-21!73;UBERON:0005743!2.22e-21!73;UBERON:0004121!2.29e-21!102;UBERON:0000924!2.29e-21!102;UBERON:0006601!2.29e-21!102;UBERON:0001049!6.55e-20!52;UBERON:0005068!6.55e-20!52;UBERON:0006241!6.55e-20!52;UBERON:0007135!6.55e-20!52;UBERON:0000955!1.07e-19!50;UBERON:0006238!1.07e-19!50;UBERON:0002616!4.98e-19!49;UBERON:0000033!1.35e-17!63;UBERON:0002346!7.15e-17!71;UBERON:0003075!7.15e-17!71;UBERON:0007284!7.15e-17!71;UBERON:0002020!2.36e-15!34;UBERON:0003080!4.52e-14!40;UBERON:0002780!1.86e-13!39;UBERON:0001890!1.86e-13!39;UBERON:0006240!1.86e-13!39;UBERON:0002791!2.96e-13!29;UBERON:0003528!2.96e-13!29;UBERON:0001893!2.96e-13!29;UBERON:0003056!3.30e-12!49;UBERON:0000064!1.39e-10!99;UBERON:0000956!1.80e-09!21;UBERON:0001869!1.80e-09!21;UBERON:0000203!1.80e-09!21;UBERON:0007023!2.55e-09!51;UBERON:0007811!1.00e-08!86;UBERON:0002619!4.27e-08!17|ontology_enrichment_uberon_v019_2=UBERON:0000073,8.78e-27,54;UBERON:0001049,1.11e-24,52;UBERON:0005068,1.11e-24,52;UBERON:0006241,1.11e-24,52;UBERON:0007135,1.11e-24,52;UBERON:0001016,6.59e-24,75;UBERON:0001017,8.76e-24,73;UBERON:0000955,2.56e-21,47;UBERON:0006238,2.56e-21,47;UBERON:0002020,3.86e-21,34;UBERON:0002616,2.34e-20,46;UBERON:0002346,1.60e-18,64;UBERON:0003075,1.60e-18,64;UBERON:0007284,1.60e-18,64;UBERON:0003528,7.88e-18,29;UBERON:0002791,7.88e-18,29;UBERON:0001893,7.88e-18,29;UBERON:0004121,8.30e-18,95;UBERON:0000924,8.30e-18,95;UBERON:0006601,8.30e-18,95;UBERON:0003080,7.76e-17,40;UBERON:0010371,3.98e-16,73;UBERON:0002780,6.23e-16,39;UBERON:0001890,6.23e-16,39;UBERON:0006240,6.23e-16,39;UBERON:0003056,6.07e-13,49;UBERON:0011216,2.91e-12,194;UBERON:0000956,6.14e-12,21;UBERON:0001869,6.14e-12,21;UBERON:0000203,6.14e-12,21;UBERON:0010314,2.18e-11,92;UBERON:0007023,4.40e-11,51;UBERON:0002619,9.12e-10,17;UBERON:0000160,4.52e-09,31;UBERON:0002021,4.84e-09,10;UBERON:0000411,4.84e-09,10;UBERON:0001950,4.84e-09,10;UBERON:0003076,1.38e-08,12;UBERON:0003057,1.38e-08,12;UBERON:0000344,3.06e-07,15;UBERON:0002420,3.22e-07,8;UBERON:0007245,3.22e-07,8;UBERON:0010009,3.22e-07,8;UBERON:0010011,3.22e-07,8;UBERON:0000454,3.22e-07,8|phase1_expression=0.640595388419176,2.09385244583617,1.36499771816861,1.51232105653415,1.50268718983904,0.671517087647559,1.16806320297763,0,0,0,0,0,0,0,0,0.607425802169478,0.699561878128147,0,0.274228867211478,0,1.44573593256819,0.297872853602656,0.783599367416806,1.43993180514066,2.06468352960453,3.44539178469012,2.58457197695445,1.50829862880122,4.3705386474966,2.26827116783938,2.66076612786366,0,0.61506478758457,0,1.44425809875637,2.32728503501889,0.408338712524738,0.837063261473815,0,0,0,1.36609096991689,0,0.251793635951155,0.405507724878058,0.183546752161682,5.47673941043627,0.872100625521786,2.63623419281366,1.1665793944457,0.699932108126813,1.43752564364972,0,0,0,0,0,3.09403255366465,1.01158230429799,1.5869729378161,0.633831403506179,1.0165335962074,0,1.7997994345628,0,0.7104801149461,3.29560121570245,3.07374644257244,1.14058573539325,1.62007125998029,1.47227472945967,1.99955689082663,3.09215957332259,0.979926393719632,1.24599112323707,0.919218786610021,3.30347642998166,4.59674417106676,5.9906547969935,1.71452174049252,2.47016637726506,2.6045668527838,6.14202597803038,2.25105044012672,3.66715794664344,1.76777151284201,1.85083185038834,2.23679334990361,2.12033341332915,0.906858721281426,0,0,0,1.07940638327563,0,0.448026887097336,0.702222100658759,0.852151612890289,0.259786004602869,0.70667914902068,0.985903938436763,0,0,0,0.432982082022428,0.506719730950197,0,1.1418387971906,0,1.33597925158342,0.867426633830679,0,0,1.3565037649736,0.823120949949934,2.26199864393416,0.988779870937496,0.722996784599558,0,0.161766849947409,0.662524555381181,0.969750506270444,5.59175283654366,3.80615036115011,1.46612694769419,2.81002760729451,0.11981512450592,0,0.254140454146129,4.04434726393021,1.83000241127451,2.1361239859187,5.73620256634512,4.85859368927628,4.36354893575076,3.40706652442291,0.305518091550949,0.497627882440372,1.76905930903572,2.73574412652416,0.130120442962704,0,0.900310649026746,0.60281927134286,0.0680364991513279,0.2562274405697,0.562210347358373,0.776110112217047,0.215567992932842,0,0,0.219195732427575,0,0,0,0.199034266818493,0,0.51469581422943,0,0.414251545071004,0,0.36012412292203,0.23674473558521,0,0,0,0,0,0.16455984991348,0.32833492815819,0.162137619091711,0,0.219550115291051,0.134206418760372,3.15434922846191,1.9551876352064,3.96502539580558,3.17340679996253,0,0.464473343720877,0.38660238396628,0.403367049246685,0.444756087689741,1.33157938278791,3.32170343081158,1.4822905925161,0.251335208800269,1.79060824837036,0.58489226135736,3.59527763461689,1.94524244887225,2.38969527905241,0.189667900953082,0.114248512609729,0,0.610953983535943,0,0.280543279561274,0.252946148497029,0.295220295959204,0.31399745568275,0,0.592905254174298,0,0.393117990226406,0.674586337154561,0.608580364165509,0.482354319504834,0,0,0,0.274561413188081,0,0,0.312037673114561,0.505157755894224,1.07638448113147,1.4473305640901,0,0,0.488894929326078,0,0,0,0.476087281772027,0.195133647857799,0,0,0.159454768657487,0.327726629431476,0.172684981865896,0.289298117163023,0,0.54390568381871,0.983528546038072,0.275936746304732,3.69266356971921,4.45404409050372,0,0,0,0.780877488593277,0.646270193198397,0.955875191810208,0.668396022247182,0.283076530788832,0,0.292255857911312,0,4.17717711348349,0.99358059645788,0,0.162886959353576,0.329940245945071,0,0,0,0.188605079755898,0.590603785761546,0.307435147943927,1.03371317267288,0,0,0,0,0,2.38307724027652,0.36012218806262,0.517434735131018,0.428674070063185,0.709360934569094,1.07021290561242,0.329098041204242,0.304464949114599,1.87737366450968,1.69465656691056,0.441056796109924,1.6488625294148,0.322928853391811,1.32688434841943,0.835606408021955,0.328281799490123,2.33184669303881,3.52308073819968,0.512612642393558,0,0.555583582109135,0.376736914009382,0.546776910884101,0,0.169978429993855,0,0.552799895217695,1.90934123603023,0.316335993581135,0,0.324016022465404,0.209088296014469,0.218362563746178,0.269728692769641,0.495920734352016,0.26175594198403,2.33306951925227,0.621339313086926,0,0.149516546043979,0.330916980914195,0,0.516639293910924,0.168956125490778,0.234714477291508,0.13020438484395,0.524296722128554,0.483168241652012,0.288030006257865,0,0,0.205421914329655,0.649604114888975,0.179026695667481,0.39736270956253,0.360586348559907,0,0.302899349844443,0.304827226619999,0.403304740547362,0.682205165178267,0.769694733122636,0.350630706544707,0.453460767230423,0,0.179427713218951,0,1.9318959403219,1.12609485270709,0.36630324853453,0.857473516316263,0,2.25900737046827,1.84130094602871,2.29158205375759,7.56154002312225,1.37016503954128,2.2661816921691,2.02506750069542,5.85417564191487,3.62513927187364,7.7664046762773,0.103787347584177,0,0.682934423016537,0.486213434136588,0.419226325255965,0,0,0.618105171716683,0,0,0,0.188626341386076,0.561849044819294,0.576226371643824,0.574354689556133,0,0.463537303779422,0.192909220463705,0,0.147198920134397,1.37147700954166,0.532427418478012,0.715308569841963,0.145346416632329,0.564656282491984,0.507687647350059,0.182927972872773,0.263069711437843,0.135804113845862,0,0,0.492522411877817,0.409231043169689,0.309873682371932,0.578719832943424,0.249810577937946,0.701794825336225,0.644613162144895,0,0,0.463735671240843|short_description=p9@Shisa5}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=66940 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=Q9D7I0 | |||
|association_with_transcript=-9bp_to_NM_026381,uc009rrq.1_5end | |||
|cluster_id=chr9:108957395..108957415,+ | |||
|description=CAGE_peak_9_at_Shisa5_5end | |||
|id=chr9:108957395..108957415,+ | |||
|ontology_enrichment_celltype=CL:0000221!6.42e-10!44;CL:0000133!6.42e-10!44;CL:0002319!9.61e-10!43;CL:0000117!1.62e-09!23;CL:0000337!1.62e-09!23;CL:0000055!1.55e-07!50;CL:0002321!8.76e-07!70;CL:0000220!8.76e-07!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.35e-11,23;CL:0000337,2.35e-11,23;CL:0002319,1.17e-08,43;CL:0000221,2.76e-08,44;CL:0000133,2.76e-08,44;CL:0002321,7.78e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!4.74e-22!75;UBERON:0001016!4.74e-22!75;UBERON:0001017!2.22e-21!73;UBERON:0005743!2.22e-21!73;UBERON:0004121!2.29e-21!102;UBERON:0000924!2.29e-21!102;UBERON:0006601!2.29e-21!102;UBERON:0001049!6.55e-20!52;UBERON:0005068!6.55e-20!52;UBERON:0006241!6.55e-20!52;UBERON:0007135!6.55e-20!52;UBERON:0000955!1.07e-19!50;UBERON:0006238!1.07e-19!50;UBERON:0002616!4.98e-19!49;UBERON:0000033!1.35e-17!63;UBERON:0002346!7.15e-17!71;UBERON:0003075!7.15e-17!71;UBERON:0007284!7.15e-17!71;UBERON:0002020!2.36e-15!34;UBERON:0003080!4.52e-14!40;UBERON:0002780!1.86e-13!39;UBERON:0001890!1.86e-13!39;UBERON:0006240!1.86e-13!39;UBERON:0002791!2.96e-13!29;UBERON:0003528!2.96e-13!29;UBERON:0001893!2.96e-13!29;UBERON:0003056!3.30e-12!49;UBERON:0000064!1.39e-10!99;UBERON:0000956!1.80e-09!21;UBERON:0001869!1.80e-09!21;UBERON:0000203!1.80e-09!21;UBERON:0007023!2.55e-09!51;UBERON:0007811!1.00e-08!86;UBERON:0002619!4.27e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,8.78e-27,54;UBERON:0001049,1.11e-24,52;UBERON:0005068,1.11e-24,52;UBERON:0006241,1.11e-24,52;UBERON:0007135,1.11e-24,52;UBERON:0001016,6.59e-24,75;UBERON:0001017,8.76e-24,73;UBERON:0000955,2.56e-21,47;UBERON:0006238,2.56e-21,47;UBERON:0002020,3.86e-21,34;UBERON:0002616,2.34e-20,46;UBERON:0002346,1.60e-18,64;UBERON:0003075,1.60e-18,64;UBERON:0007284,1.60e-18,64;UBERON:0003528,7.88e-18,29;UBERON:0002791,7.88e-18,29;UBERON:0001893,7.88e-18,29;UBERON:0004121,8.30e-18,95;UBERON:0000924,8.30e-18,95;UBERON:0006601,8.30e-18,95;UBERON:0003080,7.76e-17,40;UBERON:0010371,3.98e-16,73;UBERON:0002780,6.23e-16,39;UBERON:0001890,6.23e-16,39;UBERON:0006240,6.23e-16,39;UBERON:0003056,6.07e-13,49;UBERON:0011216,2.91e-12,194;UBERON:0000956,6.14e-12,21;UBERON:0001869,6.14e-12,21;UBERON:0000203,6.14e-12,21;UBERON:0010314,2.18e-11,92;UBERON:0007023,4.40e-11,51;UBERON:0002619,9.12e-10,17;UBERON:0000160,4.52e-09,31;UBERON:0002021,4.84e-09,10;UBERON:0000411,4.84e-09,10;UBERON:0001950,4.84e-09,10;UBERON:0003076,1.38e-08,12;UBERON:0003057,1.38e-08,12;UBERON:0000344,3.06e-07,15;UBERON:0002420,3.22e-07,8;UBERON:0007245,3.22e-07,8;UBERON:0010009,3.22e-07,8;UBERON:0010011,3.22e-07,8;UBERON:0000454,3.22e-07,8 | |||
|phase1_expression=0.640595388419176,2.09385244583617,1.36499771816861,1.51232105653415,1.50268718983904,0.671517087647559,1.16806320297763,0,0,0,0,0,0,0,0,0.607425802169478,0.699561878128147,0,0.274228867211478,0,1.44573593256819,0.297872853602656,0.783599367416806,1.43993180514066,2.06468352960453,3.44539178469012,2.58457197695445,1.50829862880122,4.3705386474966,2.26827116783938,2.66076612786366,0,0.61506478758457,0,1.44425809875637,2.32728503501889,0.408338712524738,0.837063261473815,0,0,0,1.36609096991689,0,0.251793635951155,0.405507724878058,0.183546752161682,5.47673941043627,0.872100625521786,2.63623419281366,1.1665793944457,0.699932108126813,1.43752564364972,0,0,0,0,0,3.09403255366465,1.01158230429799,1.5869729378161,0.633831403506179,1.0165335962074,0,1.7997994345628,0,0.7104801149461,3.29560121570245,3.07374644257244,1.14058573539325,1.62007125998029,1.47227472945967,1.99955689082663,3.09215957332259,0.979926393719632,1.24599112323707,0.919218786610021,3.30347642998166,4.59674417106676,5.9906547969935,1.71452174049252,2.47016637726506,2.6045668527838,6.14202597803038,2.25105044012672,3.66715794664344,1.76777151284201,1.85083185038834,2.23679334990361,2.12033341332915,0.906858721281426,0,0,0,1.07940638327563,0,0.448026887097336,0.702222100658759,0.852151612890289,0.259786004602869,0.70667914902068,0.985903938436763,0,0,0,0.432982082022428,0.506719730950197,0,1.1418387971906,0,1.33597925158342,0.867426633830679,0,0,1.3565037649736,0.823120949949934,2.26199864393416,0.988779870937496,0.722996784599558,0,0.161766849947409,0.662524555381181,0.969750506270444,5.59175283654366,3.80615036115011,1.46612694769419,2.81002760729451,0.11981512450592,0,0.254140454146129,4.04434726393021,1.83000241127451,2.1361239859187,5.73620256634512,4.85859368927628,4.36354893575076,3.40706652442291,0.305518091550949,0.497627882440372,1.76905930903572,2.73574412652416,0.130120442962704,0,0.900310649026746,0.60281927134286,0.0680364991513279,0.2562274405697,0.562210347358373,0.776110112217047,0.215567992932842,0,0,0.219195732427575,0,0,0,0.199034266818493,0,0.51469581422943,0,0.414251545071004,0,0.36012412292203,0.23674473558521,0,0,0,0,0,0.16455984991348,0.32833492815819,0.162137619091711,0,0.219550115291051,0.134206418760372,3.15434922846191,1.9551876352064,3.96502539580558,3.17340679996253,0,0.464473343720877,0.38660238396628,0.403367049246685,0.444756087689741,1.33157938278791,3.32170343081158,1.4822905925161,0.251335208800269,1.79060824837036,0.58489226135736,3.59527763461689,1.94524244887225,2.38969527905241,0.189667900953082,0.114248512609729,0,0.610953983535943,0,0.280543279561274,0.252946148497029,0.295220295959204,0.31399745568275,0,0.592905254174298,0,0.393117990226406,0.674586337154561,0.608580364165509,0.482354319504834,0,0,0,0.274561413188081,0,0,0.312037673114561,0.505157755894224,1.07638448113147,1.4473305640901,0,0,0.488894929326078,0,0,0,0.476087281772027,0.195133647857799,0,0,0.159454768657487,0.327726629431476,0.172684981865896,0.289298117163023,0,0.54390568381871,0.983528546038072,0.275936746304732,3.69266356971921,4.45404409050372,0,0,0,0.780877488593277,0.646270193198397,0.955875191810208,0.668396022247182,0.283076530788832,0,0.292255857911312,0,4.17717711348349,0.99358059645788,0,0.162886959353576,0.329940245945071,0,0,0,0.188605079755898,0.590603785761546,0.307435147943927,1.03371317267288,0,0,0,0,0,2.38307724027652,0.36012218806262,0.517434735131018,0.428674070063185,0.709360934569094,1.07021290561242,0.329098041204242,0.304464949114599,1.87737366450968,1.69465656691056,0.441056796109924,1.6488625294148,0.322928853391811,1.32688434841943,0.835606408021955,0.328281799490123,2.33184669303881,3.52308073819968,0.512612642393558,0,0.555583582109135,0.376736914009382,0.546776910884101,0,0.169978429993855,0,0.552799895217695,1.90934123603023,0.316335993581135,0,0.324016022465404,0.209088296014469,0.218362563746178,0.269728692769641,0.495920734352016,0.26175594198403,2.33306951925227,0.621339313086926,0,0.149516546043979,0.330916980914195,0,0.516639293910924,0.168956125490778,0.234714477291508,0.13020438484395,0.524296722128554,0.483168241652012,0.288030006257865,0,0,0.205421914329655,0.649604114888975,0.179026695667481,0.39736270956253,0.360586348559907,0,0.302899349844443,0.304827226619999,0.403304740547362,0.682205165178267,0.769694733122636,0.350630706544707,0.453460767230423,0,0.179427713218951,0,1.9318959403219,1.12609485270709,0.36630324853453,0.857473516316263,0,2.25900737046827,1.84130094602871,2.29158205375759,7.56154002312225,1.37016503954128,2.2661816921691,2.02506750069542,5.85417564191487,3.62513927187364,7.7664046762773,0.103787347584177,0,0.682934423016537,0.486213434136588,0.419226325255965,0,0,0.618105171716683,0,0,0,0.188626341386076,0.561849044819294,0.576226371643824,0.574354689556133,0,0.463537303779422,0.192909220463705,0,0.147198920134397,1.37147700954166,0.532427418478012,0.715308569841963,0.145346416632329,0.564656282491984,0.507687647350059,0.182927972872773,0.263069711437843,0.135804113845862,0,0,0.492522411877817,0.409231043169689,0.309873682371932,0.578719832943424,0.249810577937946,0.701794825336225,0.644613162144895,0,0,0.463735671240843 | |||
|short_description=p9@Shisa5 | |||
}} |
Latest revision as of 04:49, 26 September 2015
Short description: | p9@Shisa5 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_Shisa5_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -9bp_to_NM_026381, uc009rrq.1_5end |
EntrezGene: | Shisa5 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.35e-11 | 23 |
neuroblast (sensu Vertebrata) | 2.35e-11 | 23 |
neural cell | 1.17e-08 | 43 |
ectodermal cell | 2.76e-08 | 44 |
neurectodermal cell | 2.76e-08 | 44 |
embryonic cell | 7.78e-07 | 70 |