FFCP PHASE1:Mm9::chr6:8898570..8898602,+: Difference between revisions
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{{FFCP|EntrezGene=18231|HGNC=|MCL_coexpression_id=2832|UniProt=Q61200|association_with_transcript=-11bp_to_ENSMUST00000160300,uc009aya.1,uc009ayb.1_5end|description=CAGE_peak_4_at_Nxph1_5end|id=chr6:8898570..8898602,+|ontology_enrichment_celltype=CL:0000117!5.72e-26!23;CL:0000337!5.72e-26!23;CL:0000540!1.64e-15!33;CL:0000047!1.64e-15!33;CL:0000031!1.64e-15!33;CL:0000404!1.64e-15!33;CL:0002319!5.76e-12!43;CL:0000393!6.82e-12!39;CL:0000211!6.82e-12!39;CL:0000221!1.66e-11!44;CL:0000133!1.66e-11!44;CL:0000055!3.66e-09!50;CL:0002609!8.37e-08!6|ontology_enrichment_celltype_v019_2=CL:0000117,7.67e-43,23;CL:0000337,7.67e-43,23;CL:0000540,5.78e-28,33;CL:0000047,5.78e-28,33;CL:0000031,5.78e-28,33;CL:0000404,5.78e-28,33;CL:0000393,1.04e-22,39;CL:0000211,1.04e-22,39;CL:0002319,5.02e-20,43;CL:0000221,1.97e-19,44;CL:0000133,1.97e-19,44;CL:0002609,4.26e-12,6;CL:0002321,5.21e-10,70;CL:0002612,1.02e-07,3;CL:0002608,3.39e-07,3;CL:0002610,6.80e-07,3;CL:0002614,6.80e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!1.26e-31!34;UBERON:0001049!4.00e-29!52;UBERON:0005068!4.00e-29!52;UBERON:0006241!4.00e-29!52;UBERON:0007135!4.00e-29!52;UBERON:0001017!3.53e-28!73;UBERON:0005743!3.53e-28!73;UBERON:0000073!4.32e-28!75;UBERON:0001016!4.32e-28!75;UBERON:0000955!1.10e-26!50;UBERON:0006238!1.10e-26!50;UBERON:0002616!1.77e-25!49;UBERON:0002791!3.00e-25!29;UBERON:0003528!3.00e-25!29;UBERON:0001893!3.00e-25!29;UBERON:0003080!2.00e-20!40;UBERON:0002780!1.74e-19!39;UBERON:0001890!1.74e-19!39;UBERON:0006240!1.74e-19!39;UBERON:0000033!1.80e-19!63;UBERON:0004121!1.02e-18!102;UBERON:0000924!1.02e-18!102;UBERON:0006601!1.02e-18!102;UBERON:0002346!1.48e-18!71;UBERON:0003075!1.48e-18!71;UBERON:0007284!1.48e-18!71;UBERON:0000956!9.90e-18!21;UBERON:0001869!9.90e-18!21;UBERON:0000203!9.90e-18!21;UBERON:0003056!8.87e-16!49;UBERON:0002619!1.02e-13!17;UBERON:0002021!4.12e-11!10;UBERON:0000411!4.12e-11!10;UBERON:0001950!4.12e-11!10;UBERON:0007811!6.73e-11!86;UBERON:0003076!3.66e-09!12;UBERON:0003057!3.66e-09!12;UBERON:0000153!5.58e-09!94;UBERON:0002420!1.33e-08!8;UBERON:0007245!1.33e-08!8;UBERON:0010009!1.33e-08!8;UBERON:0010011!1.33e-08!8;UBERON:0000454!1.33e-08!8;UBERON:0002240!2.13e-08!6;UBERON:0005174!2.13e-08!6;UBERON:0001137!2.13e-08!6;UBERON:0001948!1.42e-07!5;UBERON:0002315!1.42e-07!5;UBERON:0002298!2.40e-07!6;UBERON:0000025!8.11e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.12e-51,54;UBERON:0002020,1.92e-50,34;UBERON:0001049,2.35e-47,52;UBERON:0005068,2.35e-47,52;UBERON:0006241,2.35e-47,52;UBERON:0007135,2.35e-47,52;UBERON:0001017,2.63e-47,73;UBERON:0001016,8.58e-46,75;UBERON:0003528,1.04e-39,29;UBERON:0002791,1.04e-39,29;UBERON:0001893,1.04e-39,29;UBERON:0000955,7.35e-38,47;UBERON:0006238,7.35e-38,47;UBERON:0002346,8.44e-37,64;UBERON:0003075,8.44e-37,64;UBERON:0007284,8.44e-37,64;UBERON:0002616,6.83e-36,46;UBERON:0003080,2.58e-34,40;UBERON:0004121,3.79e-34,95;UBERON:0000924,3.79e-34,95;UBERON:0006601,3.79e-34,95;UBERON:0002780,1.04e-32,39;UBERON:0001890,1.04e-32,39;UBERON:0006240,1.04e-32,39;UBERON:0010371,3.70e-31,73;UBERON:0000956,1.31e-29,21;UBERON:0001869,1.31e-29,21;UBERON:0000203,1.31e-29,21;UBERON:0003056,1.18e-26,49;UBERON:0010314,7.19e-23,92;UBERON:0002619,8.76e-23,17;UBERON:0002021,1.14e-17,10;UBERON:0000411,1.14e-17,10;UBERON:0001950,1.14e-17,10;UBERON:0000025,1.01e-16,114;UBERON:0004111,4.88e-15,122;UBERON:0002240,4.26e-13,6;UBERON:0005174,4.26e-13,6;UBERON:0001137,4.26e-13,6;UBERON:0003076,1.34e-12,12;UBERON:0003057,1.34e-12,12;UBERON:0011216,9.49e-12,194;UBERON:0001948,1.04e-11,5;UBERON:0002315,1.04e-11,5;UBERON:0002420,7.29e-11,8;UBERON:0007245,7.29e-11,8;UBERON:0010009,7.29e-11,8;UBERON:0010011,7.29e-11,8;UBERON:0000454,7.29e-11,8;UBERON:0002950,1.82e-08,4;UBERON:0001891,1.82e-08,4;UBERON:0009616,1.82e-08,4;UBERON:0010286,1.82e-08,4;UBERON:0000483,6.94e-08,174;UBERON:0002257,1.02e-07,3;UBERON:0000119,1.07e-07,176;UBERON:0001954,4.68e-07,7;UBERON:0003022,4.68e-07,7;UBERON:0002421,4.68e-07,7;UBERON:0000349,4.68e-07,7;UBERON:0002600,4.68e-07,7;UBERON:0002038,6.80e-07,3;UBERON:0009663,6.80e-07,3;UBERON:0009661,6.80e-07,3;UBERON:0000125,6.80e-07,3;UBERON:0002308,6.80e-07,3;UBERON:0004684,6.80e-07,3;UBERON:0002275,6.80e-07,3|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935476191661768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63011399117477,1.05798195854407,3.80298842103708,0,0,0,0,0,0,0.768436610643109,1.97010263386108,2.8351247049655,1.89292465216244,4.57041575046086,7.50953039235486,2.44981598429908,3.35459148563827,11.0306254393203,3.30347642998166,3.57524546638526,1.99688493233117,1.45074916503213,1.82975287204819,1.56274011167028,1.95428099300967,4.50210088025344,2.90316670775939,7.95497180778903,6.12198227436143,6.71038004971082,0.075726193333184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.585561594023094,1.8850203613211,0,0,0,0,1.9472783122627,0.457500602818626,1.8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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=18231 | |||
|HGNC= | |||
|MCL_coexpression_id=2832 | |||
|TSSclassifier=NA | |||
|UniProt=Q61200 | |||
|association_with_transcript=-11bp_to_ENSMUST00000160300,uc009aya.1,uc009ayb.1_5end | |||
|cluster_id=chr6:8898570..8898602,+ | |||
|description=CAGE_peak_4_at_Nxph1_5end | |||
|id=chr6:8898570..8898602,+ | |||
|ontology_enrichment_celltype=CL:0000117!5.72e-26!23;CL:0000337!5.72e-26!23;CL:0000540!1.64e-15!33;CL:0000047!1.64e-15!33;CL:0000031!1.64e-15!33;CL:0000404!1.64e-15!33;CL:0002319!5.76e-12!43;CL:0000393!6.82e-12!39;CL:0000211!6.82e-12!39;CL:0000221!1.66e-11!44;CL:0000133!1.66e-11!44;CL:0000055!3.66e-09!50;CL:0002609!8.37e-08!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,7.67e-43,23;CL:0000337,7.67e-43,23;CL:0000540,5.78e-28,33;CL:0000047,5.78e-28,33;CL:0000031,5.78e-28,33;CL:0000404,5.78e-28,33;CL:0000393,1.04e-22,39;CL:0000211,1.04e-22,39;CL:0002319,5.02e-20,43;CL:0000221,1.97e-19,44;CL:0000133,1.97e-19,44;CL:0002609,4.26e-12,6;CL:0002321,5.21e-10,70;CL:0002612,1.02e-07,3;CL:0002608,3.39e-07,3;CL:0002610,6.80e-07,3;CL:0002614,6.80e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!1.26e-31!34;UBERON:0001049!4.00e-29!52;UBERON:0005068!4.00e-29!52;UBERON:0006241!4.00e-29!52;UBERON:0007135!4.00e-29!52;UBERON:0001017!3.53e-28!73;UBERON:0005743!3.53e-28!73;UBERON:0000073!4.32e-28!75;UBERON:0001016!4.32e-28!75;UBERON:0000955!1.10e-26!50;UBERON:0006238!1.10e-26!50;UBERON:0002616!1.77e-25!49;UBERON:0002791!3.00e-25!29;UBERON:0003528!3.00e-25!29;UBERON:0001893!3.00e-25!29;UBERON:0003080!2.00e-20!40;UBERON:0002780!1.74e-19!39;UBERON:0001890!1.74e-19!39;UBERON:0006240!1.74e-19!39;UBERON:0000033!1.80e-19!63;UBERON:0004121!1.02e-18!102;UBERON:0000924!1.02e-18!102;UBERON:0006601!1.02e-18!102;UBERON:0002346!1.48e-18!71;UBERON:0003075!1.48e-18!71;UBERON:0007284!1.48e-18!71;UBERON:0000956!9.90e-18!21;UBERON:0001869!9.90e-18!21;UBERON:0000203!9.90e-18!21;UBERON:0003056!8.87e-16!49;UBERON:0002619!1.02e-13!17;UBERON:0002021!4.12e-11!10;UBERON:0000411!4.12e-11!10;UBERON:0001950!4.12e-11!10;UBERON:0007811!6.73e-11!86;UBERON:0003076!3.66e-09!12;UBERON:0003057!3.66e-09!12;UBERON:0000153!5.58e-09!94;UBERON:0002420!1.33e-08!8;UBERON:0007245!1.33e-08!8;UBERON:0010009!1.33e-08!8;UBERON:0010011!1.33e-08!8;UBERON:0000454!1.33e-08!8;UBERON:0002240!2.13e-08!6;UBERON:0005174!2.13e-08!6;UBERON:0001137!2.13e-08!6;UBERON:0001948!1.42e-07!5;UBERON:0002315!1.42e-07!5;UBERON:0002298!2.40e-07!6;UBERON:0000025!8.11e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.12e-51,54;UBERON:0002020,1.92e-50,34;UBERON:0001049,2.35e-47,52;UBERON:0005068,2.35e-47,52;UBERON:0006241,2.35e-47,52;UBERON:0007135,2.35e-47,52;UBERON:0001017,2.63e-47,73;UBERON:0001016,8.58e-46,75;UBERON:0003528,1.04e-39,29;UBERON:0002791,1.04e-39,29;UBERON:0001893,1.04e-39,29;UBERON:0000955,7.35e-38,47;UBERON:0006238,7.35e-38,47;UBERON:0002346,8.44e-37,64;UBERON:0003075,8.44e-37,64;UBERON:0007284,8.44e-37,64;UBERON:0002616,6.83e-36,46;UBERON:0003080,2.58e-34,40;UBERON:0004121,3.79e-34,95;UBERON:0000924,3.79e-34,95;UBERON:0006601,3.79e-34,95;UBERON:0002780,1.04e-32,39;UBERON:0001890,1.04e-32,39;UBERON:0006240,1.04e-32,39;UBERON:0010371,3.70e-31,73;UBERON:0000956,1.31e-29,21;UBERON:0001869,1.31e-29,21;UBERON:0000203,1.31e-29,21;UBERON:0003056,1.18e-26,49;UBERON:0010314,7.19e-23,92;UBERON:0002619,8.76e-23,17;UBERON:0002021,1.14e-17,10;UBERON:0000411,1.14e-17,10;UBERON:0001950,1.14e-17,10;UBERON:0000025,1.01e-16,114;UBERON:0004111,4.88e-15,122;UBERON:0002240,4.26e-13,6;UBERON:0005174,4.26e-13,6;UBERON:0001137,4.26e-13,6;UBERON:0003076,1.34e-12,12;UBERON:0003057,1.34e-12,12;UBERON:0011216,9.49e-12,194;UBERON:0001948,1.04e-11,5;UBERON:0002315,1.04e-11,5;UBERON:0002420,7.29e-11,8;UBERON:0007245,7.29e-11,8;UBERON:0010009,7.29e-11,8;UBERON:0010011,7.29e-11,8;UBERON:0000454,7.29e-11,8;UBERON:0002950,1.82e-08,4;UBERON:0001891,1.82e-08,4;UBERON:0009616,1.82e-08,4;UBERON:0010286,1.82e-08,4;UBERON:0000483,6.94e-08,174;UBERON:0002257,1.02e-07,3;UBERON:0000119,1.07e-07,176;UBERON:0001954,4.68e-07,7;UBERON:0003022,4.68e-07,7;UBERON:0002421,4.68e-07,7;UBERON:0000349,4.68e-07,7;UBERON:0002600,4.68e-07,7;UBERON:0002038,6.80e-07,3;UBERON:0009663,6.80e-07,3;UBERON:0009661,6.80e-07,3;UBERON:0000125,6.80e-07,3;UBERON:0002308,6.80e-07,3;UBERON:0004684,6.80e-07,3;UBERON:0002275,6.80e-07,3 | |||
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|short_description=p4@Nxph1 | |||
}} |
Latest revision as of 21:33, 1 October 2015
Short description: | p4@Nxph1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Nxph1_5end |
Coexpression cluster: | MCL_coexpression_mm9:2832 |
Association with transcript: | -11bp_to_ENSMUST00000160300, uc009aya.1, uc009ayb.1_5end |
EntrezGene: | Nxph1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 7.67e-43 | 23 |
neuroblast (sensu Vertebrata) | 7.67e-43 | 23 |
neuron | 5.78e-28 | 33 |
neuronal stem cell | 5.78e-28 | 33 |
neuroblast | 5.78e-28 | 33 |
electrically signaling cell | 5.78e-28 | 33 |
electrically responsive cell | 1.04e-22 | 39 |
electrically active cell | 1.04e-22 | 39 |
neural cell | 5.02e-20 | 43 |
ectodermal cell | 1.97e-19 | 44 |
neurectodermal cell | 1.97e-19 | 44 |
neuron of cerebral cortex | 4.26e-12 | 6 |
embryonic cell | 5.21e-10 | 70 |
neuron of the ventral spinal cord | 1.02e-07 | 3 |
hippocampal neuron | 3.39e-07 | 3 |
raphe nuclei neuron | 6.80e-07 | 3 |
neuron of the substantia nigra | 6.80e-07 | 3 |