FFCP PHASE1:Hg19::chr7:80548333..80548354,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10512 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10725 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=143bp_to_ENST00000487621_5end | |||
|cluster_id=chr7:80548333..80548354,- | |||
|coexpression_cluster_id=C958 | |||
|description=CAGE_peak_2_at_SEMA3C_5end | |||
|id=chr7:80548333..80548354,- | |||
|ontology_enrichment_celltype=CL:0000055!7.48e-18!180;CL:0000057!1.91e-09!75;CL:0002076!8.77e-08!43;CL:0000680!2.02e-07!57;CL:0000056!2.02e-07!57;CL:0000355!2.02e-07!57;CL:0000220!2.71e-07!246;CL:0000499!4.47e-07!27;CL:0002321!6.43e-07!248 | |||
|ontology_enrichment_celltype_v019=CL:0000499;1.45e-07;28 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.54e-09,76;CL:0002076,5.04e-08,42;CL:0000499,1.48e-07,28;CL:0000680,1.75e-07,58;CL:0000056,1.75e-07,58;CL:0000355,1.75e-07,58;CL:0002321,9.05e-07,250 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!1.58e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;2.19e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.12e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000475!1.98e-15!365;UBERON:0000468!4.96e-12!659;UBERON:0000481!1.33e-11!347;UBERON:0000486!2.32e-11!82;UBERON:0002100!2.33e-11!216;UBERON:0003104!1.28e-10!238;UBERON:0009142!1.28e-10!238;UBERON:0003102!1.18e-09!95;UBERON:0000467!7.66e-09!625;UBERON:0000914!9.26e-09!83;UBERON:0002329!9.26e-09!83;UBERON:0003077!9.26e-09!83;UBERON:0003059!9.26e-09!83;UBERON:0007282!9.26e-09!83;UBERON:0009618!9.26e-09!83;UBERON:0007285!9.26e-09!83;UBERON:0000480!1.30e-08!626;UBERON:0002385!3.16e-08!63;UBERON:0001015!3.16e-08!63;UBERON:0000383!3.16e-08!63;UBERON:0001134!5.57e-08!61;UBERON:0002036!5.57e-08!61;UBERON:0003082!5.57e-08!61;UBERON:0004290!6.56e-08!70;UBERON:0004923!1.35e-07!57;UBERON:0000062!1.43e-07!511;UBERON:0004119!2.02e-07!169;UBERON:0000925!2.02e-07!169;UBERON:0006595!2.02e-07!169;UBERON:0005256!5.90e-07!143;UBERON:0004458!9.14e-07!49 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000486,1.53e-11,83;UBERON:0003102,5.18e-11,99;UBERON:0002100,3.66e-10,199;UBERON:0002385,2.59e-08,64;UBERON:0001015,2.59e-08,64;UBERON:0000383,2.59e-08,64;UBERON:0004923,3.17e-08,66;UBERON:0001134,4.65e-08,62;UBERON:0002036,4.65e-08,62;UBERON:0003082,4.65e-08,62;UBERON:0002329,5.29e-08,71;UBERON:0003059,5.29e-08,71;UBERON:0007282,5.29e-08,71;UBERON:0004290,5.29e-08,71;UBERON:0009618,5.29e-08,71;UBERON:0007524,9.86e-08,73;UBERON:0003077,1.35e-07,72;UBERON:0007285,1.35e-07,72;UBERON:0004119,3.16e-07,160;UBERON:0000925,3.16e-07,160;UBERON:0006595,3.16e-07,160 | |||
|phase1_expression=31.0670028552652,19.2690471501885,40.4539139755437,28.0205235388765,21.0071714380825,37.5105565363159,0,8.84407822797563,4.17897005119742,3.68600904752263,0.697801167972428,5.46103430325431,4.48403862988371,8.91117741312336,7.95353701746998,8.74022690387308,7.8350288643117,9.49403117503585,7.3189919818576,9.72656358806625,4.28401451612931,11.2843699732112,6.01095572975219,4.10623275218653,3.76627918784408,0,0.0821005894499457,0,0.393364276848904,0,1.85779347979291,7.35536979583142,5.4217065380085,9.24385025416969,0,0,0.293600439334847,2.21598163412751,0.401088894940283,1.30206522429511,0.223915474239924,0,0,0.145398238779565,0,0.485168122375632,0,0,0,0.28769239232215,0,0,0.344745680736619,0.645484683583826,0,0.188242339542605,0,0,0.306083892370903,0.641858054152187,1.27867425159808,0,0,0,1.16083695451434,0,1.86846674698672,0,0,0.217188844705117,1.21079900526674,0,0.316462387440884,0.211255286311942,0.212604299965044,0,0.112328631146495,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0,0,0,0,0,0,0,0,4.87613732627923,0.670700859703636,2.9408389224012,86.7453965722959,12.5334477658972,42.1503370175997,48.5124427701171,28.7114573478555,38.0029964999553,39.689562145799,43.4782189180974,3.20898734969396,3.64295288292542,1.85392221392215,1.9472843619281,3.48259474598534,2.52620124985844,0.238490624305342,0,0,0,0.860234595106124,0,0.56530794192401,1.25849830862972,0.825354125820202,0.835979866147242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.97750483428055,113.806576938228,18.994576749687,38.9282991590863,130.797499061459,17.7334191099179,8.97084160227691,4.2699598291882,11.5933747756065,8.09148692039392,7.67850830797222,2.45192854670188,4.23800797405808,7.49028701823999,3.04617861383936,2.80944069147288,1.71141546463335,5.97794722207204,4.46251094846307,2.26622122115384,2.38766371393822,6.53293348015658,3.0708579327942,5.16628905878827,8.31602000097437,6.42894016124248,2.73048408581408,1.43723628363248,2.18836948140286,2.00189631795143,8.86605169549385,8.77955241761676,5.51678032438235,7.21142682751665,4.53728732640084,36.2367064091501,46.5555107624477,20.9812582147966,38.4116602988035,36.1714377626921,59.772605290586,32.3843330016966,63.9662299194399,14.4206767638574,33.068824425979,27.5229196940475,44.6143116819921,57.1565443951749,21.1579406278045,2.7129694769678,14.6878248404106,29.729327144401,22.6575630357313,0.365921118388786,0,1.04574548582567,4.14644220061482,0.756962552626885,0,20.3384392028761,21.2269509603652,5.52539685409922,10.2160944167035,8.66255378003503,11.5940664039047,9.946496714608,10.6044853148732,8.93381179132391,10.6760927605279,9.25355414533277,9.30336026305134,8.63374446551523,10.0034260806062,0,0,0.4115740113314,1.47008711385542,0,0,0,0,9.34712132927663,34.9998333008992,12.8407833928092,3.37205259772859,7.74073087569557,25.0914686379615,1.95484983186195,1.03993478527958,14.4331342025273,12.9842053572086,94.0443640828932,0.144366447761074,0,0,30.0277671224525,30.9055018354154,0.246217006087397,1.40402559083543,0.594524649154913,10.3107217385455,65.1770657411575,46.3604567982604,45.2270539649384,22.3788132655751,8.43441894163465,0,0.352193736052904,0.414656231081544,0.144119953416961,0.25248486685276,20.5733177506628,4.20187268114105,3.51652341630141,1.71072446022705,5.75833959138612,8.10926256178577,7.43148724839503,2.35475277125258,3.05172048183296,4.8403268641827,64.3773144473733,0,4.22651376278,17.8178538111863,3.12022310734098,2.57207374262142,0,0.532844358032199,8.86463560680515,7.5967024754802,1.64648067356154,3.58309802723109,7.46323092359346,7.12756685640086,27.4309833124223,13.9445353376047,20.2945172099576,0,0.502257091432126,0,1.4377491329495,0,5.70547620162874,24.3232595201533,18.4928690295345,22.203559441747,0,0,0,0,0.508189248444927,0,1.54657762555539,1.50764638800914,1.91381625495949,0,0,0,9.93801082925033,3.00102312635806,5.42530047399471,14.9739020302181,18.735043823702,26.494005725701,26.8253840333313,27.3860950752224,4.5481500811197,9.31257641632544,9.29915837949611,6.63729006750131,23.9798775931909,1.37060810223918,1.02943027143257,0,0,0,1.21251028578504,4.99306318531491,5.14063498660456,47.3885912933864,68.750964033052,24.4174282156774,43.4391715976826,44.0068234197365,41.5003116550507,14.8418066444991,11.7199367290018,15.2703083769289,14.5365066144442,20.7701771673448,6.97262270759755,10.6356315640628,24.8628023176073,6.07734526976916,11.4814448164607,18.9374814726986,5.63834984325524,6.76799419361118,8.08661039596355,2.35304930753057,1.46139224653261,14.1439182716453,0,0,0.647747748306418,0,1.89662506280697,1.50506932156456,4.58777291481069,2.49322802678617,2.0148727924996,0,0,12.5660561307031,11.15249795379,27.3317851518015,2.16386124460217,0,0,6.89118645595407,4.55042172225565,46.5983396548063,8.21701105483037,9.7050628782226,6.29365066377131,5.51346289938122,12.0310674252466,9.86113518616754,6.13631717395926,14.0670616321845,61.651273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| |||
|short_description=p2@SEMA3C | |||
}} |
Latest revision as of 17:24, 19 September 2015
Short description: | p2@SEMA3C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SEMA3C_5end |
Coexpression cluster: | C958_Synoviocyte_Urothelial_Fibroblast_Ewing_Mallassezderived_Chondrocyte_epithelioid |
Association with transcript: | 143bp_to_ENST00000487621_5end |
EntrezGene: | SEMA3C |
HGNC: | 10725 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.54e-09 | 76 |
endo-epithelial cell | 5.04e-08 | 42 |
stromal cell | 1.48e-07 | 28 |
muscle precursor cell | 1.75e-07 | 58 |
myoblast | 1.75e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.75e-07 | 58 |
embryonic cell | 9.05e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
multilaminar epithelium | 1.53e-11 | 83 |
surface structure | 5.18e-11 | 99 |
trunk | 3.66e-10 | 199 |
muscle tissue | 2.59e-08 | 64 |
musculature | 2.59e-08 | 64 |
musculature of body | 2.59e-08 | 64 |
organ component layer | 3.17e-08 | 66 |
skeletal muscle tissue | 4.65e-08 | 62 |
striated muscle tissue | 4.65e-08 | 62 |
myotome | 4.65e-08 | 62 |
somite | 5.29e-08 | 71 |
presomitic mesoderm | 5.29e-08 | 71 |
presumptive segmental plate | 5.29e-08 | 71 |
dermomyotome | 5.29e-08 | 71 |
trunk paraxial mesoderm | 5.29e-08 | 71 |
dense mesenchyme tissue | 9.86e-08 | 73 |
paraxial mesoderm | 1.35e-07 | 72 |
presumptive paraxial mesoderm | 1.35e-07 | 72 |
endoderm-derived structure | 3.16e-07 | 160 |
endoderm | 3.16e-07 | 160 |
presumptive endoderm | 3.16e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.12e-07 | 14 |