FFCP PHASE1:Hg19::chr7:45953356..45953389,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr7:45953356..45953389,+ | |||
|coexpression_cluster_id=C223 | |||
|description=CAGE_peak_at_chr7:45953356..45953389,+ | |||
|id=chr7:45953356..45953389,+ | |||
|ontology_enrichment_celltype=CL:0002620!5.50e-11!23;CL:0000055!1.04e-10!180;CL:0000057!1.20e-08!75;CL:0000153!2.84e-08!9;CL:0000447!2.84e-08!9;CL:0000667!7.06e-07!6;CL:0000058!7.06e-07!6;CL:0000138!7.06e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000153;4.34e-20;9!CL:0000447;4.34e-20;9!CL:0002620;3.69e-19;23!CL:0000327;8.19e-16;15!CL:0000138;3.55e-14;6!CL:0000499;2.31e-10;28!CL:0002589;2.99e-10;2!CL:0002595;1.70e-09;5!CL:0000359;1.04e-07;32!CL:0002548;1.21e-07;6!CL:0000214;1.35e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,4.15e-20,9;CL:0000447,4.15e-20,9;CL:0002620,2.11e-19,23;CL:0000327,8.40e-16,15;CL:0000058,3.62e-14,6;CL:0000138,3.62e-14,6;CL:0000057,5.25e-11,76;CL:0000499,2.27e-10,28;CL:0002589,2.99e-10,2;CL:0002595,2.12e-09,5;CL:0000359,2.77e-08,32;CL:0000214,1.26e-07,3;CL:0002548,1.44e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:17!1.34e-07!5;DOID:450!1.34e-07!5;DOID:66!1.34e-07!5;DOID:423!1.34e-07!5;DOID:0080000!1.34e-07!5;DOID:11722!1.34e-07!5 | |||
|ontology_enrichment_disease_v019=DOID:3350;1.49e-10;2!DOID:17;3.38e-09;5!DOID:450;3.38e-09;5!DOID:66;3.38e-09;5!DOID:423;3.38e-09;5!DOID:0080000;3.38e-09;5!DOID:11722;3.38e-09;5 | |||
|ontology_enrichment_disease_v019_2=DOID:3350,1.69e-10,2;DOID:17,1.94e-09,5;DOID:450,1.94e-09,5;DOID:66,1.94e-09,5;DOID:423,1.94e-09,5;DOID:0080000,1.94e-09,5;DOID:11722,1.94e-09,5 | |||
|ontology_enrichment_uberon=UBERON:0002097!4.55e-07!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0001529;2.99e-10;2!UBERON:0007204;2.99e-10;2!UBERON:0002097;9.26e-10;41!UBERON:0003834;1.70e-09;5!UBERON:0001533;1.70e-09;5!UBERON:0006915;1.35e-07;3!UBERON:0007616;1.35e-07;3!UBERON:0002217;1.35e-07;3!UBERON:0002018;1.35e-07;3!UBERON:0002199;2.15e-07;46!UBERON:0002416;2.15e-07;46!UBERON:0003513;6.75e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,3.29e-12,41;UBERON:0002199,1.20e-10,46;UBERON:0002416,1.20e-10,46;UBERON:0001529,2.99e-10,2;UBERON:0007204,2.99e-10,2;UBERON:0003834,2.12e-09,5;UBERON:0001533,2.12e-09,5;UBERON:0006915,1.26e-07,3;UBERON:0007616,1.26e-07,3;UBERON:0002217,1.26e-07,3;UBERON:0002018,1.26e-07,3;UBERON:0003513,7.86e-07,7 | |||
|phase1_expression=0.908391896352783,0,0.140954404095971,4.00293193412522,0,3.48935409640147,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0.730310090387373,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,27.469375581227,15.0401373190767,14.4846518960824,0.795285947051099,5.35298357332899,0.0945348171640679,0.221729397462564,0.087834785693126,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,0,0.132409180813219,0.573673241497627,0,1.12135520028461,2.1349799145941,1.2333377420858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,1.97328599257748,0.85422955527427,1.90738711043606,4.80145753735044,0.309157587715317,2.57640540045629,1.30281799432113,1.18143432568886,0.584622030967192,5.80597680761463,2.39329736469978,0.161646056818812,7.4552014428489,1.41052937518696,0.508681776931463,0,0,0,0,0,0,0,0,0,0,0.643240938192885,0,0,0,0,0,0,0,0,0.237270619111097,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14861935834114,0,0.723906533337896,0.61642896765115,0.358121926479791,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0.12269149171914,0,0,1.03985430765404,0.713715955188647,0.315404830067869,0.234282829985426,0,0,0,0,0.368738337083406,0,0,0,0,0,0,0,0,0.907170879989041,0.744323423456331,0.306923946576125,0.280660094433074,0.512556597022804,0.511707249066704,0.160853921143607,0,0,0,0.164254312027618,0,0,0,0,0,0,0,0.393373244878272,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0.193341436584244,0,0,0,0,0,0,0,0,0,0,0,0,1.88887408098384,0,0.616067160352178,0,0,1.11194531462352,1.86062352764589,0,0,0,0,0,0.318203247925937,0,0,0,0.117812402345686,0.404364963146632,1.58510321173008,0,0,0.974853958525138,0,0.136499911407986,0,1.13008116620243,1.10273068709225,3.3171948762061,6.57676327880644,0,0,0.202910376962704,0,0,0,0,0,0,3.16661452946496,2.96365403663912,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0.71623345421307,0.890894042497916,0.307160702099232,0,0,0,0,0,0.597743964753209,0,0,0,0,1.86623752597084,0.0898683511473268,0.537063524026827,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0.120596438625408,0,0,0,0.219385397153973,0,0.278847488557207,0.153900517007594,0,0,0,0,0.31900115973192,0.0915975934018623,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0.347119476670262,0.0979923974143777,0,0,1.20390222730132,0,0.0730893170861856,0,0,0,0,0,0,0,0,0,0,0.39961921916426,0.144090417154106,0,0,0,0,0,0,0,0.509991088181609,0,0,0,0,0,0,0,0,0,0,0,0,0.134366944973453,2.16179930125442,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0.0524545881349981,0,0.179287339332845,0,0,0,0.25426853765475,0.542999601753713,0.864221491201268,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.701139929541673,0.554805861502613,0.189403005275089,0.251567901752575,0,0.228840068396924,0.453692771289717,0.310874401165561,0,0,0,0.155262956876259,0,0.265841714557995,0,0,1.14241563650639,0,0,0,0.464033759878494,0,0,0,0.336749488765919,1.26184898228651,0,0,0,0.226705925512272,0,0,1.07453304648892,0.308801447160972,0,0,0.192914038270915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.954013051960256,0,0,0.352675943690684,0.3062454773532,0,0,0,0,0,0,0,0,0,0,0,0.577628330751691,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0.206686796501184,0,0,0,0.496211178389294,0.175871244359621,0.894336993477167,0,0,0,0,0.975726071789027,0,0,0,0,0,0.222462803784138,0.078493092850514,0,0,0.913158720509496,0.863710364874486,3.8220135030964,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.447421727191169,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0,0,0,2.37897960562944,0,0.128915775947154,0,0.535661815816973,0,0.160482733378337,0,0,0,0,0,0,0,0.371995018166751,2.77305377178851,0.865253124247578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.684466602170562,0,0,0.665320713092027,0,0,0,0.808426818959282,2.34640942403454,0.244482888365733,0,0,0,0 | |||
|short_description=p@chr7:45953356..45953389,+ | |||
}} |
Latest revision as of 10:26, 31 July 2015
Short description: | p@chr7:45953356..45953389, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr7:45953356..45953389, + |
Coexpression cluster: | C223_Chondrocyte_basal_renal_Fibroblast_Smooth_spindle_Synoviocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 4.15e-20 | 9 |
carbohydrate secreting cell | 4.15e-20 | 9 |
skin fibroblast | 2.11e-19 | 23 |
extracellular matrix secreting cell | 8.40e-16 | 15 |
chondroblast | 3.62e-14 | 6 |
chondrocyte | 3.62e-14 | 6 |
fibroblast | 5.25e-11 | 76 |
stromal cell | 2.27e-10 | 28 |
smooth muscle cell of the brachiocephalic vasculature | 2.99e-10 | 2 |
smooth muscle cell of the subclavian artery | 2.12e-09 | 5 |
vascular associated smooth muscle cell | 2.77e-08 | 32 |
synovial cell | 1.26e-07 | 3 |
cardiac fibroblast | 1.44e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
skin of body | 3.29e-12 | 41 |
integument | 1.20e-10 | 46 |
integumental system | 1.20e-10 | 46 |
brachiocephalic artery | 2.99e-10 | 2 |
brachiocephalic vasculature | 2.99e-10 | 2 |
thoracic segment blood vessel | 2.12e-09 | 5 |
subclavian artery | 2.12e-09 | 5 |
stratified squamous epithelium | 1.26e-07 | 3 |
layer of synovial tissue | 1.26e-07 | 3 |
synovial joint | 1.26e-07 | 3 |
synovial membrane of synovial joint | 1.26e-07 | 3 |
trunk blood vessel | 7.86e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
mesenchymal cell neoplasm | 1.69e-10 | 2 |
musculoskeletal system disease | 1.94e-09 | 5 |
myotonic disease | 1.94e-09 | 5 |
muscle tissue disease | 1.94e-09 | 5 |
myopathy | 1.94e-09 | 5 |
muscular disease | 1.94e-09 | 5 |
myotonic dystrophy | 1.94e-09 | 5 |