FFCP PHASE1:Mm9::chr2:147012101..147012118,-: Difference between revisions
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{{FFCP|EntrezGene=18088|HGNC=|UniProt=P42586,Q8BRS9,Q3URZ4|association_with_transcript=19bp_to_ENSMUST00000067075,ENSMUST00000109970,NM_001077632,NM_010919,uc008mst.1,uc008msu.1_5end|description=CAGE_peak_3_at_Nkx2-2_5end|id=chr2:147012101..147012118,-|ontology_enrichment_celltype=CL:0002319!2.81e-13!43;CL:0000221!8.86e-13!44;CL:0000133!8.86e-13!44;CL:0000117!6.77e-11!23;CL:0000337!6.77e-11!23;CL:0000055!3.12e-10!50;CL:0000333!4.00e-09!10;CL:0000095!4.00e-09!10;CL:0000243!4.00e-09!10;CL:0000123!4.00e-09!10;CL:0000125!4.00e-09!10;CL:0000030!4.00e-09!10;CL:0000339!4.00e-09!10;CL:0002453!2.32e-08!8;CL:0000540!6.63e-07!33;CL:0000047!6.63e-07!33;CL:0000031!6.63e-07!33;CL:0000404!6.63e-07!33|ontology_enrichment_celltype_v019_2=CL:0000117,1.91e-16,23;CL:0000337,1.91e-16,23;CL:0002319,1.03e-13,43;CL:0000221,2.60e-13,44;CL:0000133,2.60e-13,44;CL:0000540,1.36e-10,33;CL:0000047,1.36e-10,33;CL:0000031,1.36e-10,33;CL:0000404,1.36e-10,33;CL:0002610,6.92e-09,3;CL:0000393,1.55e-08,39;CL:0000211,1.55e-08,39;CL:0002613,2.38e-08,3;CL:0002614,4.47e-08,3;CL:0002321,5.86e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.85e-20!75;UBERON:0001016!2.85e-20!75;UBERON:0001017!2.96e-19!73;UBERON:0005743!2.96e-19!73;UBERON:0001049!6.89e-15!52;UBERON:0005068!6.89e-15!52;UBERON:0006241!6.89e-15!52;UBERON:0007135!6.89e-15!52;UBERON:0003076!2.77e-13!12;UBERON:0003057!2.77e-13!12;UBERON:0000955!4.57e-13!50;UBERON:0006238!4.57e-13!50;UBERON:0004121!1.27e-12!102;UBERON:0000924!1.27e-12!102;UBERON:0006601!1.27e-12!102;UBERON:0002616!1.81e-12!49;UBERON:0001264!1.66e-11!12;UBERON:0003922!1.66e-11!12;UBERON:0002114!1.66e-11!12;UBERON:0003923!1.66e-11!12;UBERON:0003924!1.66e-11!12;UBERON:0003921!1.66e-11!12;UBERON:0001045!2.35e-10!13;UBERON:0000033!5.81e-10!63;UBERON:0002346!1.16e-09!71;UBERON:0003075!1.16e-09!71;UBERON:0007284!1.16e-09!71;UBERON:0002420!2.67e-09!8;UBERON:0007245!2.67e-09!8;UBERON:0010009!2.67e-09!8;UBERON:0010011!2.67e-09!8;UBERON:0000454!2.67e-09!8;UBERON:0002020!7.17e-09!34;UBERON:0002240!5.98e-08!6;UBERON:0005174!5.98e-08!6;UBERON:0001137!5.98e-08!6;UBERON:0002298!6.14e-08!6;UBERON:0002108!8.71e-08!16;UBERON:0002075!4.67e-07!19;UBERON:0004733!7.11e-07!6;UBERON:0004732!7.11e-07!6;UBERON:0002028!7.11e-07!6;UBERON:0007277!7.11e-07!6|ontology_enrichment_uberon_v019_2=UBERON:0001264,2.02e-19,12;UBERON:0001017,3.61e-18,73;UBERON:0001016,1.57e-17,75;UBERON:0000073,5.18e-16,54;UBERON:0001049,2.96e-13,52;UBERON:0005068,2.96e-13,52;UBERON:0006241,2.96e-13,52;UBERON:0007135,2.96e-13,52;UBERON:0003076,6.76e-13,12;UBERON:0003057,6.76e-13,12;UBERON:0004121,1.29e-12,95;UBERON:0000924,1.29e-12,95;UBERON:0006601,1.29e-12,95;UBERON:0002075,1.53e-11,19;UBERON:0002240,5.00e-11,6;UBERON:0005174,5.00e-11,6;UBERON:0001137,5.00e-11,6;UBERON:0002420,6.10e-11,8;UBERON:0007245,6.10e-11,8;UBERON:0010009,6.10e-11,8;UBERON:0010011,6.10e-11,8;UBERON:0000454,6.10e-11,8;UBERON:0002950,2.64e-10,4;UBERON:0001891,2.64e-10,4;UBERON:0009616,2.64e-10,4;UBERON:0010286,2.64e-10,4;UBERON:0002346,5.71e-10,64;UBERON:0003075,5.71e-10,64;UBERON:0007284,5.71e-10,64;UBERON:0002020,1.17e-09,34;UBERON:0004684,6.92e-09,3;UBERON:0002275,6.92e-09,3;UBERON:0001948,1.60e-08,5;UBERON:0002315,1.60e-08,5;UBERON:0010371,3.17e-08,73;UBERON:0002038,4.47e-08,3;UBERON:0009663,4.47e-08,3;UBERON:0009661,4.47e-08,3;UBERON:0000125,4.47e-08,3;UBERON:0002308,4.47e-08,3;UBERON:0002616,1.52e-07,46;UBERON:0000955,2.53e-07,47;UBERON:0006238,2.53e-07,47|phase1_expression=0,0,0,0,0,0.16787927191189,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340173160604279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0.65407546914134,0.219686182734472,0.194429899074283,1.1198913730029,5.75010257459886,0,0,0,0,0,0,0.809265843438391,0,0.633831403506179,0.338844532069132,0,0,0,0,3.29560121570245,1.92109152660777,0,0,0,3.14216082844184,3.3130281142742,0,0,0,5.50579404996943,3.06449611404451,2.61131106535614,2.76961204233407,1.18933936683133,4.16730696445408,1.3959149950069,2.8138130501584,2.29197371665215,1.76777151284201,1.56608848879013,0.931997229126503,0.075726193333184,0.151143120213571,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,1.46612694769419,0,0,0,0,2.54644086988199,0.915001205637253,0.376963056338593,1.21677024134594,0.255715457330331,1.24672826735736,0.811206315338788,0,0,0,0,0,0,0,0,0,0.12811372028485,0,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47202963994889,0.205809224758569,0,0,0,0,0.257734922644187,0.201683524623343,0,0,0,0.164698954724011,0.502670417600539,0.397912944082302,0.19496408711912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.49541651965817,1.99259867206745,0,0,0,0,0,0,0.222798674082394,0,0,0,0,0.321321316421807,0,0,0,0,0,2.91336763385978,2.72091201268276,2.45186603682668,4.13422650033082,0.922305443831782,1.55056975900933,2.90826983582004,3.56497378384721,1.8962205476149,1.05418608574999,1.03135543248187,0,0.900305470156551,0.129358683782755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.15871328846243,0,0,0,0,0,0,0,0,0,0,0,0.609958401380546,0.216010681643603,0,0,0,0.0826534557253359,0,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19318959403219,0,0,0,0,0.564751842617067,0,0,1.03111909406213,0,0,0,0,0,0,0.415149390336707,0.399024873401031,0,0,0,0.551530525350042,0,0,0.320919209591815,0,0,0,0.0936415074698824,0,0.0574354689556133,0,0,0,0,0,0,0,0,0.145346416632329,0.0941093804153306,0.338458431566706,0.182927972872773,0,0,0,0.118635018124174,0,0.409231043169689,0,0,0.249810577937946,0,0,0,0,0.231867835620421|short_description=p3@Nkx2-2}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=18088 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=P42586,Q8BRS9,Q3URZ4 | |||
|association_with_transcript=19bp_to_ENSMUST00000067075,ENSMUST00000109970,NM_001077632,NM_010919,uc008mst.1,uc008msu.1_5end | |||
|cluster_id=chr2:147012101..147012118,- | |||
|description=CAGE_peak_3_at_Nkx2-2_5end | |||
|id=chr2:147012101..147012118,- | |||
|ontology_enrichment_celltype=CL:0002319!2.81e-13!43;CL:0000221!8.86e-13!44;CL:0000133!8.86e-13!44;CL:0000117!6.77e-11!23;CL:0000337!6.77e-11!23;CL:0000055!3.12e-10!50;CL:0000333!4.00e-09!10;CL:0000095!4.00e-09!10;CL:0000243!4.00e-09!10;CL:0000123!4.00e-09!10;CL:0000125!4.00e-09!10;CL:0000030!4.00e-09!10;CL:0000339!4.00e-09!10;CL:0002453!2.32e-08!8;CL:0000540!6.63e-07!33;CL:0000047!6.63e-07!33;CL:0000031!6.63e-07!33;CL:0000404!6.63e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.91e-16,23;CL:0000337,1.91e-16,23;CL:0002319,1.03e-13,43;CL:0000221,2.60e-13,44;CL:0000133,2.60e-13,44;CL:0000540,1.36e-10,33;CL:0000047,1.36e-10,33;CL:0000031,1.36e-10,33;CL:0000404,1.36e-10,33;CL:0002610,6.92e-09,3;CL:0000393,1.55e-08,39;CL:0000211,1.55e-08,39;CL:0002613,2.38e-08,3;CL:0002614,4.47e-08,3;CL:0002321,5.86e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.85e-20!75;UBERON:0001016!2.85e-20!75;UBERON:0001017!2.96e-19!73;UBERON:0005743!2.96e-19!73;UBERON:0001049!6.89e-15!52;UBERON:0005068!6.89e-15!52;UBERON:0006241!6.89e-15!52;UBERON:0007135!6.89e-15!52;UBERON:0003076!2.77e-13!12;UBERON:0003057!2.77e-13!12;UBERON:0000955!4.57e-13!50;UBERON:0006238!4.57e-13!50;UBERON:0004121!1.27e-12!102;UBERON:0000924!1.27e-12!102;UBERON:0006601!1.27e-12!102;UBERON:0002616!1.81e-12!49;UBERON:0001264!1.66e-11!12;UBERON:0003922!1.66e-11!12;UBERON:0002114!1.66e-11!12;UBERON:0003923!1.66e-11!12;UBERON:0003924!1.66e-11!12;UBERON:0003921!1.66e-11!12;UBERON:0001045!2.35e-10!13;UBERON:0000033!5.81e-10!63;UBERON:0002346!1.16e-09!71;UBERON:0003075!1.16e-09!71;UBERON:0007284!1.16e-09!71;UBERON:0002420!2.67e-09!8;UBERON:0007245!2.67e-09!8;UBERON:0010009!2.67e-09!8;UBERON:0010011!2.67e-09!8;UBERON:0000454!2.67e-09!8;UBERON:0002020!7.17e-09!34;UBERON:0002240!5.98e-08!6;UBERON:0005174!5.98e-08!6;UBERON:0001137!5.98e-08!6;UBERON:0002298!6.14e-08!6;UBERON:0002108!8.71e-08!16;UBERON:0002075!4.67e-07!19;UBERON:0004733!7.11e-07!6;UBERON:0004732!7.11e-07!6;UBERON:0002028!7.11e-07!6;UBERON:0007277!7.11e-07!6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001264,2.02e-19,12;UBERON:0001017,3.61e-18,73;UBERON:0001016,1.57e-17,75;UBERON:0000073,5.18e-16,54;UBERON:0001049,2.96e-13,52;UBERON:0005068,2.96e-13,52;UBERON:0006241,2.96e-13,52;UBERON:0007135,2.96e-13,52;UBERON:0003076,6.76e-13,12;UBERON:0003057,6.76e-13,12;UBERON:0004121,1.29e-12,95;UBERON:0000924,1.29e-12,95;UBERON:0006601,1.29e-12,95;UBERON:0002075,1.53e-11,19;UBERON:0002240,5.00e-11,6;UBERON:0005174,5.00e-11,6;UBERON:0001137,5.00e-11,6;UBERON:0002420,6.10e-11,8;UBERON:0007245,6.10e-11,8;UBERON:0010009,6.10e-11,8;UBERON:0010011,6.10e-11,8;UBERON:0000454,6.10e-11,8;UBERON:0002950,2.64e-10,4;UBERON:0001891,2.64e-10,4;UBERON:0009616,2.64e-10,4;UBERON:0010286,2.64e-10,4;UBERON:0002346,5.71e-10,64;UBERON:0003075,5.71e-10,64;UBERON:0007284,5.71e-10,64;UBERON:0002020,1.17e-09,34;UBERON:0004684,6.92e-09,3;UBERON:0002275,6.92e-09,3;UBERON:0001948,1.60e-08,5;UBERON:0002315,1.60e-08,5;UBERON:0010371,3.17e-08,73;UBERON:0002038,4.47e-08,3;UBERON:0009663,4.47e-08,3;UBERON:0009661,4.47e-08,3;UBERON:0000125,4.47e-08,3;UBERON:0002308,4.47e-08,3;UBERON:0002616,1.52e-07,46;UBERON:0000955,2.53e-07,47;UBERON:0006238,2.53e-07,47 | |||
|phase1_expression=0,0,0,0,0,0.16787927191189,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340173160604279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0.65407546914134,0.219686182734472,0.194429899074283,1.1198913730029,5.75010257459886,0,0,0,0,0,0,0.809265843438391,0,0.633831403506179,0.338844532069132,0,0,0,0,3.29560121570245,1.92109152660777,0,0,0,3.14216082844184,3.3130281142742,0,0,0,5.50579404996943,3.06449611404451,2.61131106535614,2.76961204233407,1.18933936683133,4.16730696445408,1.3959149950069,2.8138130501584,2.29197371665215,1.76777151284201,1.56608848879013,0.931997229126503,0.075726193333184,0.151143120213571,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,1.46612694769419,0,0,0,0,2.54644086988199,0.915001205637253,0.376963056338593,1.21677024134594,0.255715457330331,1.24672826735736,0.811206315338788,0,0,0,0,0,0,0,0,0,0.12811372028485,0,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47202963994889,0.205809224758569,0,0,0,0,0.257734922644187,0.201683524623343,0,0,0,0.164698954724011,0.502670417600539,0.397912944082302,0.19496408711912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.49541651965817,1.99259867206745,0,0,0,0,0,0,0.222798674082394,0,0,0,0,0.321321316421807,0,0,0,0,0,2.91336763385978,2.72091201268276,2.45186603682668,4.13422650033082,0.922305443831782,1.55056975900933,2.90826983582004,3.56497378384721,1.8962205476149,1.05418608574999,1.03135543248187,0,0.900305470156551,0.129358683782755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.15871328846243,0,0,0,0,0,0,0,0,0,0,0,0.609958401380546,0.216010681643603,0,0,0,0.0826534557253359,0,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19318959403219,0,0,0,0,0.564751842617067,0,0,1.03111909406213,0,0,0,0,0,0,0.415149390336707,0.399024873401031,0,0,0,0.551530525350042,0,0,0.320919209591815,0,0,0,0.0936415074698824,0,0.0574354689556133,0,0,0,0,0,0,0,0,0.145346416632329,0.0941093804153306,0.338458431566706,0.182927972872773,0,0,0,0.118635018124174,0,0.409231043169689,0,0,0.249810577937946,0,0,0,0,0.231867835620421 | |||
|short_description=p3@Nkx2-2 | |||
}} |
Latest revision as of 20:51, 25 September 2015
Short description: | p3@Nkx2-2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Nkx2-2_5end |
Coexpression cluster: | NA |
Association with transcript: | 19bp_to_ENSMUST00000067075, ENSMUST00000109970, NM_001077632, NM_010919, uc008mst.1, uc008msu.1_5end |
EntrezGene: | Nkx2-2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.91e-16 | 23 |
neuroblast (sensu Vertebrata) | 1.91e-16 | 23 |
neural cell | 1.03e-13 | 43 |
ectodermal cell | 2.60e-13 | 44 |
neurectodermal cell | 2.60e-13 | 44 |
neuron | 1.36e-10 | 33 |
neuronal stem cell | 1.36e-10 | 33 |
neuroblast | 1.36e-10 | 33 |
electrically signaling cell | 1.36e-10 | 33 |
raphe nuclei neuron | 6.92e-09 | 3 |
electrically responsive cell | 1.55e-08 | 39 |
electrically active cell | 1.55e-08 | 39 |
striatum neuron | 2.38e-08 | 3 |
neuron of the substantia nigra | 4.47e-08 | 3 |
embryonic cell | 5.86e-07 | 70 |