FFCP PHASE1:Mm9::chr1:19093112..19093124,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=226896|HGNC=|MCL_coexpression_id=224|UniProt=Q91ZK0|association_with_transcript=9bp_to_ENSMUST00000037294,NM_153154,uc007akp.1_5end|description=CAGE_peak_1_at_Tfap2d_5end|id=chr1:19093112..19093124,+|ontology_enrichment_celltype=CL:0000117!1.08e-14!23;CL:0000337!1.08e-14!23;CL:0000540!2.79e-09!33;CL:0000047!2.79e-09!33;CL:0000031!2.79e-09!33;CL:0000404!2.79e-09!33;CL:0000120!2.27e-08!3;CL:0002613!4.28e-08!3;CL:0002610!1.39e-07!3;CL:0002608!1.98e-07!3;CL:0002319!1.99e-07!43;CL:0000393!2.19e-07!39;CL:0000211!2.19e-07!39;CL:0000221!3.47e-07!44;CL:0000133!3.47e-07!44|ontology_enrichment_celltype_v019_2=CL:0000120,1.46e-30,3;CL:0002613,2.19e-29,3;CL:0000117,7.24e-27,23;CL:0000337,7.24e-27,23;CL:0000540,1.07e-18,33;CL:0000047,1.07e-18,33;CL:0000031,1.07e-18,33;CL:0000404,1.07e-18,33;CL:0000393,8.47e-16,39;CL:0000211,8.47e-16,39;CL:0002319,2.60e-14,43;CL:0000221,5.55e-14,44;CL:0000133,5.55e-14,44;CL:0002321,1.10e-08,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!1.65e-10!63;UBERON:0003056!2.62e-10!49;UBERON:0000970!1.12e-08!9;UBERON:0000019!1.12e-08!9;UBERON:0000047!1.12e-08!9;UBERON:0004088!1.12e-08!9;UBERON:0002104!1.12e-08!9;UBERON:0001456!1.12e-08!9;UBERON:0003072!1.12e-08!9;UBERON:0003071!1.12e-08!9;UBERON:0004128!1.12e-08!9;UBERON:0004121!8.91e-08!102;UBERON:0000924!8.91e-08!102;UBERON:0006601!8.91e-08!102;UBERON:0000369!1.37e-07!5;UBERON:0002435!1.37e-07!5;UBERON:0000204!1.37e-07!5;UBERON:0010082!1.37e-07!5;UBERON:0004684!1.39e-07!3;UBERON:0002275!1.39e-07!3;UBERON:0001444!5.95e-07!11|ontology_enrichment_uberon_v019_2=UBERON:0000369,5.91e-18,5;UBERON:0002435,5.91e-18,5;UBERON:0000204,5.91e-18,5;UBERON:0010082,5.91e-18,5;UBERON:0002420,1.74e-11,8;UBERON:0007245,1.74e-11,8;UBERON:0010009,1.74e-11,8;UBERON:0010011,1.74e-11,8;UBERON:0000454,1.74e-11,8;UBERON:0001017,2.57e-08,73;UBERON:0001016,4.38e-08,75;UBERON:0004121,4.90e-08,95;UBERON:0000924,4.90e-08,95;UBERON:0006601,4.90e-08,95|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.6996078169627,13.7537654610729,2.53532561402472,0,0,0,0,0,0,0,0,0.270011876663381,0,0,0,0.244981598429908,0.670918297127655,1.83843757322004,1.10115880999389,0.383062014255563,0.921639199537461,1.18697658957174,2.56165402086747,1.04182674111352,0,0,0,0,0,0,0.075726193333184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.599162557619291,0,0.125654352112864,0,0,0.20778804455956,0.162241263067758,0,0,0,0,0,0,0.720248519221397,1.35634336052144,0.884474488967262,0.640568601424249,0.655912071918102,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.399024873401031,0.170733605754134,0.243106717068294,0.419226325255965,0.183843508450014,0,0,0,0,0,0.377252682772152,0.655490552289177,0.192075457214608,0.287177344778066,0.476293691283074,0.231768651889711,0.192909220463705,0,0.441596760403192,0,0,0,0,0,0.25384382367503,0,0,0.135804113845862,0,0,0.0985044823755635,0,0.464810523557898,0,0.749431733813838,0,0,0,0,0|short_description=p1@Tfap2d}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=226896 | |||
|HGNC= | |||
|MCL_coexpression_id=224 | |||
|TSSclassifier=NA | |||
|UniProt=Q91ZK0 | |||
|association_with_transcript=9bp_to_ENSMUST00000037294,NM_153154,uc007akp.1_5end | |||
|cluster_id=chr1:19093112..19093124,+ | |||
|description=CAGE_peak_1_at_Tfap2d_5end | |||
|id=chr1:19093112..19093124,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.08e-14!23;CL:0000337!1.08e-14!23;CL:0000540!2.79e-09!33;CL:0000047!2.79e-09!33;CL:0000031!2.79e-09!33;CL:0000404!2.79e-09!33;CL:0000120!2.27e-08!3;CL:0002613!4.28e-08!3;CL:0002610!1.39e-07!3;CL:0002608!1.98e-07!3;CL:0002319!1.99e-07!43;CL:0000393!2.19e-07!39;CL:0000211!2.19e-07!39;CL:0000221!3.47e-07!44;CL:0000133!3.47e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000120,1.46e-30,3;CL:0002613,2.19e-29,3;CL:0000117,7.24e-27,23;CL:0000337,7.24e-27,23;CL:0000540,1.07e-18,33;CL:0000047,1.07e-18,33;CL:0000031,1.07e-18,33;CL:0000404,1.07e-18,33;CL:0000393,8.47e-16,39;CL:0000211,8.47e-16,39;CL:0002319,2.60e-14,43;CL:0000221,5.55e-14,44;CL:0000133,5.55e-14,44;CL:0002321,1.10e-08,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!1.65e-10!63;UBERON:0003056!2.62e-10!49;UBERON:0000970!1.12e-08!9;UBERON:0000019!1.12e-08!9;UBERON:0000047!1.12e-08!9;UBERON:0004088!1.12e-08!9;UBERON:0002104!1.12e-08!9;UBERON:0001456!1.12e-08!9;UBERON:0003072!1.12e-08!9;UBERON:0003071!1.12e-08!9;UBERON:0004128!1.12e-08!9;UBERON:0004121!8.91e-08!102;UBERON:0000924!8.91e-08!102;UBERON:0006601!8.91e-08!102;UBERON:0000369!1.37e-07!5;UBERON:0002435!1.37e-07!5;UBERON:0000204!1.37e-07!5;UBERON:0010082!1.37e-07!5;UBERON:0004684!1.39e-07!3;UBERON:0002275!1.39e-07!3;UBERON:0001444!5.95e-07!11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000369,5.91e-18,5;UBERON:0002435,5.91e-18,5;UBERON:0000204,5.91e-18,5;UBERON:0010082,5.91e-18,5;UBERON:0002420,1.74e-11,8;UBERON:0007245,1.74e-11,8;UBERON:0010009,1.74e-11,8;UBERON:0010011,1.74e-11,8;UBERON:0000454,1.74e-11,8;UBERON:0001017,2.57e-08,73;UBERON:0001016,4.38e-08,75;UBERON:0004121,4.90e-08,95;UBERON:0000924,4.90e-08,95;UBERON:0006601,4.90e-08,95 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.6996078169627,13.7537654610729,2.53532561402472,0,0,0,0,0,0,0,0,0.270011876663381,0,0,0,0.244981598429908,0.670918297127655,1.83843757322004,1.10115880999389,0.383062014255563,0.921639199537461,1.18697658957174,2.56165402086747,1.04182674111352,0,0,0,0,0,0,0.075726193333184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.599162557619291,0,0.125654352112864,0,0,0.20778804455956,0.162241263067758,0,0,0,0,0,0,0.720248519221397,1.35634336052144,0.884474488967262,0.640568601424249,0.655912071918102,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.399024873401031,0.170733605754134,0.243106717068294,0.419226325255965,0.183843508450014,0,0,0,0,0,0.377252682772152,0.655490552289177,0.192075457214608,0.287177344778066,0.476293691283074,0.231768651889711,0.192909220463705,0,0.441596760403192,0,0,0,0,0,0.25384382367503,0,0,0.135804113845862,0,0,0.0985044823755635,0,0.464810523557898,0,0.749431733813838,0,0,0,0,0 | |||
|short_description=p1@Tfap2d | |||
}} |
Latest revision as of 23:37, 26 September 2015
Short description: | p1@Tfap2d |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Tfap2d_5end |
Coexpression cluster: | MCL_coexpression_mm9:224 |
Association with transcript: | 9bp_to_ENSMUST00000037294, NM_153154, uc007akp.1_5end |
EntrezGene: | Tfap2d |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granule cell | 1.46e-30 | 3 |
striatum neuron | 2.19e-29 | 3 |
CNS neuron (sensu Vertebrata) | 7.24e-27 | 23 |
neuroblast (sensu Vertebrata) | 7.24e-27 | 23 |
neuron | 1.07e-18 | 33 |
neuronal stem cell | 1.07e-18 | 33 |
neuroblast | 1.07e-18 | 33 |
electrically signaling cell | 1.07e-18 | 33 |
electrically responsive cell | 8.47e-16 | 39 |
electrically active cell | 8.47e-16 | 39 |
neural cell | 2.60e-14 | 43 |
ectodermal cell | 5.55e-14 | 44 |
neurectodermal cell | 5.55e-14 | 44 |
embryonic cell | 1.10e-08 | 70 |
Ontology term | p-value | n |
---|---|---|
corpus striatum | 5.91e-18 | 5 |
striatum | 5.91e-18 | 5 |
ventral part of telencephalon | 5.91e-18 | 5 |
future corpus striatum | 5.91e-18 | 5 |
basal ganglion | 1.74e-11 | 8 |
nuclear complex of neuraxis | 1.74e-11 | 8 |
aggregate regional part of brain | 1.74e-11 | 8 |
collection of basal ganglia | 1.74e-11 | 8 |
cerebral subcortex | 1.74e-11 | 8 |
central nervous system | 2.57e-08 | 73 |
nervous system | 4.38e-08 | 75 |
ectoderm-derived structure | 4.90e-08 | 95 |
ectoderm | 4.90e-08 | 95 |
presumptive ectoderm | 4.90e-08 | 95 |