FFCP PHASE1:Hg19::chr4:54966328..54966335,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=170825 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24959 | |||
|TSSclassifier=strong | |||
|UniProt=D6R903 | |||
|association_with_transcript=-4bp_to_ENST00000503800_5end | |||
|cluster_id=chr4:54966328..54966335,+ | |||
|coexpression_cluster_id=C431 | |||
|description=CAGE_peak_1_at_GSX2_5end | |||
|id=chr4:54966328..54966335,+ | |||
|ontology_enrichment_celltype=CL:0002586!5.28e-12!3;CL:0002605!8.74e-12!3;CL:0000149!4.26e-09!4;CL:0000128!2.44e-08!7;CL:0000126!2.44e-08!7;CL:0000127!2.44e-08!7;CL:0002453!2.44e-08!7;CL:0000047!1.18e-07!8;CL:0002319!2.44e-07!25;CL:0002322!9.96e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0002586;5.35e-32;3!CL:0000149;3.49e-24;4!CL:0000540;3.85e-16;6!CL:0000404;3.85e-16;6!CL:0002605;4.60e-15;3!CL:0002319;1.36e-13;25!CL:0000147;2.59e-07;14!CL:0000128;5.84e-07;7!CL:0000126;5.84e-07;7!CL:0000127;5.84e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002586,5.65e-32,3;CL:0000149,3.63e-24,4;CL:0000047,4.61e-21,8;CL:0000540,4.16e-16,6;CL:0000031,4.16e-16,6;CL:0000404,4.16e-16,6;CL:0002605,4.28e-15,3;CL:0002319,1.40e-13,25;CL:0000147,2.62e-07,14;CL:0000128,5.67e-07,7;CL:0000126,5.67e-07,7;CL:0000127,5.67e-07,7;CL:0002453,5.67e-07,7 | |||
|ontology_enrichment_development_v019=CL:0000031;3.85e-16;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!2.84e-40!86;UBERON:0000073!5.66e-38!94;UBERON:0001016!5.66e-38!94;UBERON:0001869!3.26e-37!32;UBERON:0002020!7.19e-35!34;UBERON:0003528!7.19e-35!34;UBERON:0001893!8.71e-35!34;UBERON:0002780!1.92e-34!41;UBERON:0001890!1.92e-34!41;UBERON:0006240!1.92e-34!41;UBERON:0003056!2.53e-34!61;UBERON:0003080!1.66e-33!42;UBERON:0002791!2.36e-32!33;UBERON:0001017!5.97e-32!82;UBERON:0000955!2.04e-28!69;UBERON:0006238!2.04e-28!69;UBERON:0001049!3.68e-28!57;UBERON:0005068!3.68e-28!57;UBERON:0006241!3.68e-28!57;UBERON:0007135!3.68e-28!57;UBERON:0002616!5.16e-27!59;UBERON:0000956!1.26e-26!25;UBERON:0000203!1.26e-26!25;UBERON:0003075!2.59e-26!86;UBERON:0007284!2.59e-26!86;UBERON:0002346!7.94e-25!90;UBERON:0000153!5.22e-22!129;UBERON:0007811!5.22e-22!129;UBERON:0000033!6.33e-22!123;UBERON:0001950!5.48e-21!20;UBERON:0002619!6.29e-19!22;UBERON:0004121!1.04e-18!169;UBERON:0000924!4.45e-18!173;UBERON:0006601!4.45e-18!173;UBERON:0001871!3.87e-15!7;UBERON:0002420!1.03e-13!9;UBERON:0007245!1.03e-13!9;UBERON:0010009!1.03e-13!9;UBERON:0010011!1.03e-13!9;UBERON:0000454!1.03e-13!9;UBERON:0000966!1.99e-12!5;UBERON:0005388!1.99e-12!5;UBERON:0001802!1.99e-12!5;UBERON:0001781!5.28e-12!3;UBERON:0001782!5.28e-12!3;UBERON:0005424!5.28e-12!3;UBERON:0007023!7.82e-10!115;UBERON:0002308!1.32e-09!9;UBERON:0000125!1.32e-09!9;UBERON:0000200!3.98e-09!6;UBERON:0001875!2.66e-08!2;UBERON:0006514!2.66e-08!2;UBERON:0009663!2.79e-08!7;UBERON:0001876!3.66e-08!2;UBERON:0000064!1.70e-07!219;UBERON:0000349!8.48e-07!5;UBERON:0002021!9.01e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;6.01e-34;5!UBERON:0005388;6.01e-34;5!UBERON:0001802;6.01e-34;5!UBERON:0001781;5.35e-32;3!UBERON:0001782;5.35e-32;3!UBERON:0000970;3.73e-13;20!UBERON:0002104;1.59e-12;21!UBERON:0000020;1.99e-11;23!UBERON:0001032;6.02e-11;24!UBERON:0004456;6.02e-11;24!UBERON:0007625;3.58e-09;11!UBERON:0000019;3.92e-09;19!UBERON:0000047;3.92e-09;19!UBERON:0004088;3.92e-09;19!UBERON:0010230;3.92e-09;19!UBERON:0001456;2.80e-08;21!UBERON:0001869;1.53e-07;32!UBERON:0002791;1.79e-07;32!UBERON:0003528;4.84e-07;34!UBERON:0002020;4.84e-07;34!UBERON:0001893;6.74e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001782,5.65e-32,3;UBERON:0005424,5.65e-32,3;UBERON:0000966,2.34e-28,6;UBERON:0005388,2.34e-28,6;UBERON:0001802,2.34e-28,6;UBERON:0001781,3.63e-24,4;UBERON:0000970,1.57e-12,21;UBERON:0002104,1.57e-12,21;UBERON:0003056,1.61e-12,61;UBERON:0001017,3.79e-11,81;UBERON:0000020,5.96e-11,24;UBERON:0001032,5.96e-11,24;UBERON:0004456,5.96e-11,24;UBERON:0001016,6.37e-10,89;UBERON:0004121,1.13e-09,171;UBERON:0000924,1.13e-09,171;UBERON:0006601,1.13e-09,171;UBERON:0007625,3.63e-09,11;UBERON:0003075,4.66e-09,82;UBERON:0007284,4.66e-09,82;UBERON:0000019,1.10e-08,20;UBERON:0000047,1.10e-08,20;UBERON:0010312,1.10e-08,20;UBERON:0004088,1.10e-08,20;UBERON:0010230,1.10e-08,20;UBERON:0003072,1.10e-08,20;UBERON:0004128,1.10e-08,20;UBERON:0003071,1.10e-08,20;UBERON:0002346,1.38e-08,86;UBERON:0001456,6.54e-08,22;UBERON:0002791,8.34e-08,32;UBERON:0001869,8.34e-08,32;UBERON:0003528,2.37e-07,34;UBERON:0002020,2.37e-07,34;UBERON:0001893,2.37e-07,34;UBERON:0010371,6.51e-07,104 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.72106783270374,3.01123735160345,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365921118388786,0,0.232387885739037,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.06551398755941,0,2.31986643833309,2.17771144934653,1.27587750330633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.43705362837529,2.29610251989794,1.30151357865721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6023610669121,0,0,0,0,0,0,0,63.3882775138134,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.422008249231538,0,0,0,0,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0.0927680981618513,1.99613798001194,0,0,0,0,0,0,0,0,0,0.885741385813839,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,1.22429104652196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.29363407483012,0,0,0,0,0,0,0,0,0,0.171594997861965,0,0,0,0,0,0,0,3.00210144354895,0.410716136675979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.221963958047,0,0,0,0,0,0,0,0,0,0.258565912723101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366078794705889,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109209638192014,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0.205116364240755,0.504143392443436,0.276629009856872,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0.655087670040387,0,0.135075169236789,0,0,0.0634158101939068,1.64092442705466,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0.197318320688547,0,0,0,0,0,0,0,0,6.64731860842904,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.701818390386317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135982980381829,6.54526035510566,0,0,0,0,0,0.109265571963696,0.126698501011437,0,0,0.0918948995348449,0,0,0.535928260312357,0,0.20686599172379,0,0,0.0645889098360061,0,0.112131862580613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@GSX2 | |||
}} |
Latest revision as of 00:45, 18 September 2015
Short description: | p1@GSX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GSX2_5end |
Coexpression cluster: | C431_acute_leukemia_Mast_leiomyoblastoma_chronic_immature_CD34 |
Association with transcript: | -4bp_to_ENST00000503800_5end |
EntrezGene: | GSX2 |
HGNC: | 24959 |
UniProt: | D6R903 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retinal pigment epithelial cell | 5.65e-32 | 3 |
visual pigment cell | 3.63e-24 | 4 |
neuronal stem cell | 4.61e-21 | 8 |
neuron | 4.16e-16 | 6 |
neuroblast | 4.16e-16 | 6 |
electrically signaling cell | 4.16e-16 | 6 |
astrocyte of the cerebral cortex | 4.28e-15 | 3 |
neural cell | 1.40e-13 | 25 |
pigment cell | 2.62e-07 | 14 |
oligodendrocyte | 5.67e-07 | 7 |
macroglial cell | 5.67e-07 | 7 |
astrocyte | 5.67e-07 | 7 |
oligodendrocyte precursor cell | 5.67e-07 | 7 |