FFCP PHASE1:Hg19::chr4:174254691..174254709,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3148 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5000 | |||
|TSSclassifier=strong | |||
|UniProt=P26583 | |||
|association_with_transcript=21bp_to_Z17240_5end | |||
|cluster_id=chr4:174254691..174254709,- | |||
|coexpression_cluster_id=C1519 | |||
|description=CAGE_peak_7_at_HMGB2_5end | |||
|id=chr4:174254691..174254709,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000817,1.26e-10,3;CL:0002032,6.56e-09,161;CL:0000837,6.56e-09,161;CL:0000037,2.86e-08,168;CL:0000785,1.09e-07,2;CL:0000955,1.09e-07,2;CL:0000818,1.09e-07,2;CL:0000954,1.09e-07,2;CL:0000816,1.09e-07,2;CL:0000988,1.58e-07,177 | |||
|ontology_enrichment_development_v019=CL:0000954;7.44e-08;2 | |||
|ontology_enrichment_disease=DOID:162!8.95e-28!235;DOID:14566!6.55e-26!239;DOID:2531!1.06e-20!51;DOID:0060083!1.06e-20!51;DOID:1240!4.25e-15!39;DOID:0050686!3.58e-14!137;DOID:0050687!8.75e-12!143;DOID:8692!4.01e-10!31;DOID:305!4.72e-10!106 | |||
|ontology_enrichment_disease_v019=DOID:1240;4.79e-23;39!DOID:2531;1.07e-17;51!DOID:0060083;1.07e-17;51!DOID:8692;4.42e-15;31 | |||
|ontology_enrichment_disease_v019_2=DOID:1240,4.30e-29,39;DOID:2531,1.62e-28,51;DOID:0060083,1.62e-28,51;DOID:162,2.21e-17,235;DOID:14566,8.49e-17,239;DOID:0050686,2.85e-16,137;DOID:8692,2.72e-15,31 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| |||
|short_description=p7@HMGB2 | |||
}} |
Latest revision as of 19:04, 16 September 2015
Short description: | p7@HMGB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_HMGB2_5end |
Coexpression cluster: | C1519_diffuse_acute_chronic_NK_testicular_Reticulocytes_small |
Association with transcript: | 21bp_to_Z17240_5end |
EntrezGene: | HMGB2 |
HGNC: | 5000 |
UniProt: | P26583 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
precursor B cell | 1.26e-10 | 3 |
hematopoietic oligopotent progenitor cell | 6.56e-09 | 161 |
hematopoietic multipotent progenitor cell | 6.56e-09 | 161 |
hematopoietic stem cell | 2.86e-08 | 168 |
mature B cell | 1.09e-07 | 2 |
pre-B-II cell | 1.09e-07 | 2 |
transitional stage B cell | 1.09e-07 | 2 |
small pre-B-II cell | 1.09e-07 | 2 |
immature B cell | 1.09e-07 | 2 |
hematopoietic cell | 1.58e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
leukemia | 4.30e-29 | 39 |
hematologic cancer | 1.62e-28 | 51 |
immune system cancer | 1.62e-28 | 51 |
cancer | 2.21e-17 | 235 |
disease of cellular proliferation | 8.49e-17 | 239 |
organ system cancer | 2.85e-16 | 137 |
myeloid leukemia | 2.72e-15 | 31 |