FFCP PHASE1:Hg19::chr3:58200409..58200438,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1776 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2959 | |||
|TSSclassifier=strong | |||
|UniProt=E9PES0 | |||
|association_with_transcript=0bp_to_ENST00000483681_5end | |||
|cluster_id=chr3:58200409..58200438,- | |||
|coexpression_cluster_id=C44 | |||
|description=CAGE_peak_4_at_DNASE1L3_5end | |||
|id=chr3:58200409..58200438,- | |||
|ontology_enrichment_celltype=CL:0000945!8.84e-24!24;CL:0000826!8.84e-24!24;CL:0000738!9.84e-14!140;CL:0000784!5.99e-13!3;CL:0000542!1.98e-12!53;CL:0000051!1.98e-12!53;CL:0000767!7.82e-12!3;CL:0000842!9.40e-12!3;CL:0000838!6.56e-11!52;CL:0002087!1.34e-10!119;CL:0000037!5.97e-10!172;CL:0000566!5.97e-10!172;CL:0000988!4.75e-09!182;CL:0000224!6.39e-09!4 | |||
|ontology_enrichment_celltype_v019=CL:0000784;7.03e-35;3!CL:0000945;4.64e-22;24!CL:0000946;1.18e-12;1!CL:0000786;1.18e-12;1!CL:0000451;5.81e-10;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000784,7.04e-35,3;CL:0000945,4.64e-22,24;CL:0000826,4.64e-22,24;CL:0000946,1.11e-12,1;CL:0000786,1.11e-12,1;CL:0000980,1.11e-12,1;CL:0000542,1.54e-12,53;CL:0000051,1.54e-12,53;CL:0000738,4.94e-10,136;CL:0000451,5.81e-10,10;CL:0000838,7.49e-10,52;CL:0000037,8.45e-08,168;CL:0000988,2.58e-07,177;CL:0000785,5.73e-07,2;CL:0000955,5.73e-07,2;CL:0000818,5.73e-07,2;CL:0000954,5.73e-07,2;CL:0000816,5.73e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0004872;2.52e-07;7!CL:0000954;5.90e-07;2 | |||
|ontology_enrichment_disease=DOID:0060058!4.66e-09!10 | |||
|ontology_enrichment_disease_v019=DOID:12603;1.96e-12;1!DOID:630;2.46e-12;1!DOID:0050177;2.46e-12;1!DOID:0050427;2.46e-12;1!DOID:2355;2.75e-12;1!DOID:74;9.02e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:12603,1.96e-12,1;DOID:630,2.46e-12,1;DOID:0050177,2.46e-12,1;DOID:0050427,2.46e-12,1;DOID:2355,2.75e-12,1;DOID:74,9.02e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0004177!3.18e-13!7;UBERON:0002106!1.89e-12!3;UBERON:0004854!1.89e-12!3;UBERON:0009034!1.89e-12!3;UBERON:0002095!1.89e-12!3;UBERON:0004782!1.89e-12!3;UBERON:0003281!1.89e-12!3;UBERON:0009664!1.89e-12!3;UBERON:0002296!1.89e-12!3;UBERON:0005602!1.89e-12!3;UBERON:0001179!1.89e-12!3;UBERON:0006293!1.89e-12!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002106;6.74e-16;3!UBERON:0002372;3.85e-12;1!UBERON:0001961;3.85e-12;1!UBERON:0001744;3.85e-12;1!UBERON:0001042;3.85e-12;1!UBERON:0001735;3.85e-12;1!UBERON:0004177;6.51e-10;5!UBERON:0005057;6.51e-10;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,6.74e-16,3;UBERON:0004854,6.74e-16,3;UBERON:0009034,6.74e-16,3;UBERON:0002095,6.74e-16,3;UBERON:0004782,6.74e-16,3;UBERON:0003281,6.74e-16,3;UBERON:0009664,6.74e-16,3;UBERON:0002296,6.74e-16,3;UBERON:0005602,6.74e-16,3;UBERON:0001179,6.74e-16,3;UBERON:0006293,6.74e-16,3;UBERON:0002372,3.08e-12,1;UBERON:0001961,3.08e-12,1;UBERON:0001744,3.08e-12,1;UBERON:0001735,3.08e-12,1;UBERON:0004177,2.52e-07,7;UBERON:0005057,2.52e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.1431057886476,12.3150884174919,11.7279064157382,0.393364276848904,0.767658796194425,1.23852898652861,0,0,0,0.0774672005803016,0.995184627411951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0.344745680736619,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0.569212969109448,0,0.764546456250458,1.32171328579026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0,0,0,0,0,0,0,0,0,0,65.584921683969,50.9075470594314,69.4625527486286,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.82707210449155,0.431428401637234,0.640365346820666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.75989842889728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,0.276283915531148,0,0,10.4622084641909,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,0,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0967563312890851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,2.03215996957883,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0,0.414239055347196,0.992332043623902,0,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.25812753484717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.2519085689146,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,4.69919589899268,0.966868319603658,18.289231534262,0,0,0,0,0.917458566809082,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0.193766729508018,0.248298857183432,0,0.0636471582781649,0,0,0,1.41439311330634,0,0,0,0,0,0,0,0,0,0,0.603821380773079,3.52625341533556 | |||
|short_description=p4@DNASE1L3 | |||
}} |
Latest revision as of 05:17, 19 September 2015
Short description: | p4@DNASE1L3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_DNASE1L3_5end |
Coexpression cluster: | C44_Dendritic_CD19_CD133_granulocyte_acute_thymus_immature |
Association with transcript: | 0bp_to_ENST00000483681_5end |
EntrezGene: | DNASE1L3 |
HGNC: | 2959 |
UniProt: | E9PES0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
plasmacytoid dendritic cell | 7.04e-35 | 3 |
lymphocyte of B lineage | 4.64e-22 | 24 |
pro-B cell | 4.64e-22 | 24 |
antibody secreting cell | 1.11e-12 | 1 |
plasma cell | 1.11e-12 | 1 |
plasmablast | 1.11e-12 | 1 |
lymphocyte | 1.54e-12 | 53 |
common lymphoid progenitor | 1.54e-12 | 53 |
leukocyte | 4.94e-10 | 136 |
dendritic cell | 5.81e-10 | 10 |
lymphoid lineage restricted progenitor cell | 7.49e-10 | 52 |
hematopoietic stem cell | 8.45e-08 | 168 |
hematopoietic cell | 2.58e-07 | 177 |
mature B cell | 5.73e-07 | 2 |
pre-B-II cell | 5.73e-07 | 2 |
transitional stage B cell | 5.73e-07 | 2 |
small pre-B-II cell | 5.73e-07 | 2 |
immature B cell | 5.73e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
spleen | 6.74e-16 | 3 |
gastrointestinal system mesentery | 6.74e-16 | 3 |
stomach region | 6.74e-16 | 3 |
mesentery | 6.74e-16 | 3 |
gastrointestinal system serosa | 6.74e-16 | 3 |
mesentery of stomach | 6.74e-16 | 3 |
gut mesentery | 6.74e-16 | 3 |
dorsal mesentery | 6.74e-16 | 3 |
dorsal mesogastrium | 6.74e-16 | 3 |
peritoneal cavity | 6.74e-16 | 3 |
spleen primordium | 6.74e-16 | 3 |
tonsil | 3.08e-12 | 1 |
mucosa-associated lymphoid tissue | 3.08e-12 | 1 |
lymphoid tissue | 3.08e-12 | 1 |
tonsillar ring | 3.08e-12 | 1 |
hemopoietic organ | 2.52e-07 | 7 |
immune organ | 2.52e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
acute leukemia | 1.96e-12 | 1 |
genetic disease | 2.46e-12 | 1 |
monogenic disease | 2.46e-12 | 1 |
xeroderma pigmentosum | 2.46e-12 | 1 |
anemia | 2.75e-12 | 1 |
hematopoietic system disease | 9.02e-07 | 2 |