FFCP PHASE1:Hg19::chr3:192233054..192233080,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr3:192233054..192233080,- | |||
|description=CAGE_peak_at_chr3:192233054..192233080,- | |||
|id=chr3:192233054..192233080,- | |||
|ontology_enrichment_celltype=CL:0000039!1.81e-07!7;CL:0000586!1.81e-07!7;CL:0002322!5.73e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0000123;6.49e-11;2!CL:0000242;6.49e-11;2!CL:0002149;4.09e-07;6!CL:0002255;4.09e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,6.53e-11,2;CL:0002149,4.87e-07,6;CL:0002255,4.87e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5093;1.85e-11;4!DOID:1612;1.85e-11;4!DOID:299;4.03e-08;25!DOID:3001;4.09e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,1.89e-11,4;DOID:1612,1.89e-11,4;DOID:299,4.29e-08,25;DOID:3001,4.87e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0005743!1.01e-19!86;UBERON:0001049!2.85e-19!57;UBERON:0005068!2.85e-19!57;UBERON:0006241!2.85e-19!57;UBERON:0007135!2.85e-19!57;UBERON:0001017!4.36e-19!82;UBERON:0001950!1.26e-18!20;UBERON:0002619!2.21e-18!22;UBERON:0000073!6.88e-18!94;UBERON:0001016!6.88e-18!94;UBERON:0007023!6.98e-18!115;UBERON:0003080!8.46e-18!42;UBERON:0002780!8.88e-17!41;UBERON:0001890!8.88e-17!41;UBERON:0006240!8.88e-17!41;UBERON:0003075!3.57e-16!86;UBERON:0007284!3.57e-16!86;UBERON:0001893!8.49e-16!34;UBERON:0000955!1.11e-15!69;UBERON:0006238!1.11e-15!69;UBERON:0001869!1.13e-15!32;UBERON:0000956!1.33e-15!25;UBERON:0000203!1.33e-15!25;UBERON:0002020!1.34e-15!34;UBERON:0003528!1.34e-15!34;UBERON:0002346!6.02e-15!90;UBERON:0002791!1.00e-14!33;UBERON:0002616!1.28e-14!59;UBERON:0003056!5.80e-14!61;UBERON:0000025!2.04e-10!194;UBERON:0000033!5.37e-10!123;UBERON:0004121!7.02e-10!169;UBERON:0004111!9.12e-10!241;UBERON:0000200!9.30e-10!6;UBERON:0000153!1.21e-09!129;UBERON:0007811!1.21e-09!129;UBERON:0000924!2.37e-09!173;UBERON:0006601!2.37e-09!173;UBERON:0001871!4.94e-09!7;UBERON:0000477!2.56e-07!286 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;1.18e-15;20!UBERON:0002619;3.72e-14;22!UBERON:0000956;2.43e-12;25!UBERON:0000203;2.43e-12;25!UBERON:0003296;1.88e-10;4!UBERON:0010133;1.88e-10;4!UBERON:0002081;4.11e-10;2!UBERON:0000007;9.49e-10;2!UBERON:0002780;1.91e-09;41!UBERON:0001890;1.91e-09;41!UBERON:0002791;3.35e-09;32!UBERON:0001869;8.52e-09;32!UBERON:0003528;2.17e-08;34!UBERON:0002020;2.17e-08;34!UBERON:0001893;1.39e-07;34!UBERON:0001870;5.22e-07;3!UBERON:0004151;5.22e-07;3!UBERON:0002114;9.05e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,1.82e-15,20;UBERON:0002619,5.51e-14,22;UBERON:0002780,1.12e-12,41;UBERON:0001890,1.12e-12,41;UBERON:0003080,1.12e-12,41;UBERON:0006240,1.12e-12,41;UBERON:0000956,3.43e-12,25;UBERON:0000203,3.43e-12,25;UBERON:0000955,6.47e-11,68;UBERON:0006238,6.47e-11,68;UBERON:0003296,1.01e-10,4;UBERON:0010133,1.01e-10,4;UBERON:0000007,3.86e-10,2;UBERON:0002081,3.86e-10,2;UBERON:0010227,3.86e-10,2;UBERON:0001016,4.07e-10,89;UBERON:0001017,4.14e-10,81;UBERON:0003056,2.41e-09,61;UBERON:0000073,2.53e-09,53;UBERON:0002616,2.53e-09,53;UBERON:0002791,2.80e-09,32;UBERON:0001869,2.80e-09,32;UBERON:0001049,1.04e-08,56;UBERON:0005068,1.04e-08,56;UBERON:0006241,1.04e-08,56;UBERON:0007135,1.04e-08,56;UBERON:0003528,1.16e-08,34;UBERON:0002020,1.16e-08,34;UBERON:0001893,1.16e-08,34;UBERON:0003075,1.83e-07,82;UBERON:0007284,1.83e-07,82;UBERON:0010371,2.22e-07,104;UBERON:0001870,5.00e-07,3;UBERON:0004151,5.00e-07,3;UBERON:0002346,5.43e-07,86 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0.626984899610432,0,0.71153252537342,0,0.402829317109147,1.52054421143703,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0.609868530647977,0.397589304964456,0.464775771478074,0.207322110030741,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0.190254152234598,3.1608175918371,6.00940313466411,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248107807818777,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0,0,0,0,0,0.231046011313244,0,1.46139224653261,0.105551628892876,1.13733384070897,0.340187410553031,0,0,0,0,0,1.66215201785745,0,0,0,0.256450125116389,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.811367035427949,0,1.4098700508785,0,0.293016358543788,0,0,0,0,0,0,0,0.422008249231538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,1.20598527610407,1.99613798001194,2.3438498497671,0,0.724999575434793,0,0,0.236387681767936,2.06846023944879,0,0,0,0.120596438625408,0,0,0,0.658156191461918,0,0,0,0,0,0.0897576444097721,0.325942115766024,0,0,0,0,0.156980256395025,0,0,0,0.167821586975843,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0.134802265961354,0,0,0,0,0,0,1.20990716048664,0.30607276163049,0,0.450970258243478,0.103688191397247,0.664653872707185,0,0,0,1.13843818411917,0,0,0,0,0,0,0,0,0,0.387956065953678,0,0,0,0.19871461170299,1.39283751102933,1.75996244461323,0,0.213452994739353,0,0.144090417154106,0,1.20116498503375,0,0.372757606696298,0,0,0,0,0,0,0,0,0,0,0,0.458320848023367,1.43574604915363,0,0,0.669514372325618,0.470284307407084,0,0,0,0,0,0,0,0,0.136203406111576,2.08979093004525,0.412618309791701,0.415440338029185,0,0,0.668245123238271,0,0.0788057072991982,0,0,0,0,2.1440859791201,0.662091970365432,0,0,0,0,0,0.410462603746695,0,0,0,0,0.258565912723101,0.13223260174269,0,2.81926008926669,0,0,0,0,0,0,0,0.544017803369474,0.7520696820681,0,0,0.157054096250234,2.65820453990096,1.34228891392159,0.876336514945499,0,0,0.18628920882415,0,0,0,0,0,8.89836321033075,7.39097245915208,0,0,0,0,0,0,0,0,0,0.147855149989634,0.159296767163702,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553033744606923,0,0,0,0,0,0,0,0,0,0,0,0,0,1.79052119825112,0,0,0,0,0,0,0,0,0,7.20513673456923,0,0,0.770750701157514,0,0.638535436228605,1.43581454968528,3.02486035466062,0.760729777106397,0.645902582527404,0,0,0,0,0,0,0,0,0,0,3.90757005616546,0,0,0,0.87798860003913,0,0,1.20490039368423,1.09394961803644,0,0.496211178389294,0,0,0,1.3451348888753,1.82089681270989,1.59363533945908,0,0,0,0.40781839786099,0.855046056317038,0.472775363535873,0,0,0,0,0,0,0,0.0714765441766563,2.3702041759909,0,0,0,0,0,0,0.430227358820278,0,0,0,1.60374807980835,1.24082554265728,0.955538938977433,0,0,0,0,0.102662806856247,0,0,2.80727356154527,0,0,0.22589216407792,0.769583617218004,1.20770274853339,0,0,0,0,7.54164950725203,0.196308467114945,0.297046400327086,0.4226557275834,0.169927114687817,0,0.0644578879735772,0,0,0,0.320965466756673,0,0.458729283404541,0,0,1.42782129400921,1.30905207102113,1.0580536810308,0,0,0,0,0.327796715891087,0.126698501011437,0.815910637935854,1.3360870263278,1.65410819162721,0.752122617877125,0,0.267964130156178,0,0,0.213233981900981,0,0,0,0.224263725161227,0,0,0,0.342233301085281,0,0.358611026963382,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr3:192233054..192233080,- | |||
}} |
Latest revision as of 19:30, 29 July 2015
Short description: | p@chr3:192233054..192233080, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:192233054..192233080, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 6.53e-11 | 2 |
epithelial cell of uterus | 4.87e-07 | 6 |
stromal cell of endometrium | 4.87e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
neocortex | 1.82e-15 | 20 |
regional part of cerebral cortex | 5.51e-14 | 22 |
regional part of forebrain | 1.12e-12 | 41 |
forebrain | 1.12e-12 | 41 |
anterior neural tube | 1.12e-12 | 41 |
future forebrain | 1.12e-12 | 41 |
cerebral cortex | 3.43e-12 | 25 |
pallium | 3.43e-12 | 25 |
brain | 6.47e-11 | 68 |
future brain | 6.47e-11 | 68 |
gland of diencephalon | 1.01e-10 | 4 |
neuroendocrine gland | 1.01e-10 | 4 |
pituitary gland | 3.86e-10 | 2 |
cardiac atrium | 3.86e-10 | 2 |
future cardiac atrium | 3.86e-10 | 2 |
nervous system | 4.07e-10 | 89 |
central nervous system | 4.14e-10 | 81 |
pre-chordal neural plate | 2.41e-09 | 61 |
regional part of nervous system | 2.53e-09 | 53 |
regional part of brain | 2.53e-09 | 53 |
regional part of telencephalon | 2.80e-09 | 32 |
cerebral hemisphere | 2.80e-09 | 32 |
neural tube | 1.04e-08 | 56 |
neural rod | 1.04e-08 | 56 |
future spinal cord | 1.04e-08 | 56 |
neural keel | 1.04e-08 | 56 |
brain grey matter | 1.16e-08 | 34 |
gray matter | 1.16e-08 | 34 |
telencephalon | 1.16e-08 | 34 |
neural plate | 1.83e-07 | 82 |
presumptive neural plate | 1.83e-07 | 82 |
ecto-epithelium | 2.22e-07 | 104 |
frontal cortex | 5.00e-07 | 3 |
cardiac chamber | 5.00e-07 | 3 |
neurectoderm | 5.43e-07 | 86 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 1.89e-11 | 4 |
breast cancer | 1.89e-11 | 4 |
adenocarcinoma | 4.29e-08 | 25 |
female reproductive endometrioid cancer | 4.87e-07 | 6 |