FFCP PHASE1:Hg19::chr3:167375550..167375561,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr3:167375550..167375561,- | |||
|coexpression_cluster_id=C1033 | |||
|description=CAGE_peak_at_chr3:167375550..167375561,- | |||
|id=chr3:167375550..167375561,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006241;3.66e-23;3!UBERON:0003057;3.66e-23;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.75e-53!57;UBERON:0005068!1.75e-53!57;UBERON:0006241!1.75e-53!57;UBERON:0007135!1.75e-53!57;UBERON:0002616!8.91e-41!59;UBERON:0001017!2.98e-40!82;UBERON:0003076!2.68e-38!15;UBERON:0003057!2.68e-38!15;UBERON:0005743!2.71e-38!86;UBERON:0003075!9.80e-35!86;UBERON:0007284!9.80e-35!86;UBERON:0000073!1.79e-34!94;UBERON:0001016!1.79e-34!94;UBERON:0000955!4.69e-34!69;UBERON:0006238!4.69e-34!69;UBERON:0002346!4.38e-33!90;UBERON:0007023!9.63e-32!115;UBERON:0002298!8.93e-29!8;UBERON:0000988!9.79e-29!3;UBERON:0002771!1.08e-27!3;UBERON:0004733!4.13e-27!12;UBERON:0002028!4.13e-27!12;UBERON:0007277!4.13e-27!12;UBERON:0004732!5.33e-25!13;UBERON:0002020!1.40e-24!34;UBERON:0003528!1.40e-24!34;UBERON:0001893!3.24e-24!34;UBERON:0002780!3.77e-24!41;UBERON:0001890!3.77e-24!41;UBERON:0006240!3.77e-24!41;UBERON:0000200!3.79e-24!6;UBERON:0003080!1.50e-23!42;UBERON:0001869!6.22e-21!32;UBERON:0002791!2.85e-20!33;UBERON:0002148!8.54e-20!2;UBERON:0009662!8.54e-20!2;UBERON:0001871!2.52e-18!7;UBERON:0000033!3.52e-18!123;UBERON:0004121!3.77e-18!169;UBERON:0000924!1.14e-17!173;UBERON:0006601!1.14e-17!173;UBERON:0000153!3.20e-17!129;UBERON:0007811!3.20e-17!129;UBERON:0002680!1.05e-16!9;UBERON:0001895!1.05e-16!9;UBERON:0010092!1.05e-16!9;UBERON:0002308!1.19e-16!9;UBERON:0000125!1.19e-16!9;UBERON:0003056!8.06e-16!61;UBERON:0001950!3.43e-15!20;UBERON:0000025!7.15e-14!194;UBERON:0002619!7.80e-14!22;UBERON:0002240!1.60e-13!3;UBERON:0006331!1.60e-13!3;UBERON:0001896!4.56e-13!3;UBERON:0005290!4.56e-13!3;UBERON:0010096!4.56e-13!3;UBERON:0000956!3.44e-12!25;UBERON:0000203!3.44e-12!25;UBERON:0004111!1.40e-10!241;UBERON:0007190!3.96e-10!1;UBERON:0002336!4.33e-10!1;UBERON:0001018!4.33e-10!1;UBERON:0002473!4.33e-10!1;UBERON:0005340!4.33e-10!1;UBERON:0002316!4.33e-10!1;UBERON:0003544!4.33e-10!1;UBERON:0001020!4.33e-10!1;UBERON:0005970!4.33e-10!1;UBERON:0002437!4.33e-10!1;UBERON:0002420!1.22e-09!9;UBERON:0007245!1.22e-09!9;UBERON:0010009!1.22e-09!9;UBERON:0010011!1.22e-09!9;UBERON:0000454!1.22e-09!9;UBERON:0000477!1.37e-09!286;UBERON:0005174!1.83e-08!5;UBERON:0001137!1.83e-08!5;UBERON:0000064!6.70e-08!219;UBERON:0000483!1.44e-07!309;UBERON:0000119!1.82e-07!312;UBERON:0000475!8.77e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0002298;1.09e-44;6!UBERON:0002148;3.61e-34;2!UBERON:0006331;3.61e-34;2!UBERON:0009662;3.61e-34;2!UBERON:0000988;2.62e-23;3!UBERON:0001896;3.66e-23;3!UBERON:0002240;3.66e-23;3!UBERON:0005174;3.66e-23;3!UBERON:0005290;3.66e-23;3!UBERON:0001137;3.66e-23;3!UBERON:0004733;4.86e-23;12!UBERON:0002028;4.86e-23;12!UBERON:0004732;2.28e-21;13!UBERON:0002680;1.04e-08;9!UBERON:0000125;1.04e-08;9!UBERON:0002308;1.04e-08;9!UBERON:0001895;1.04e-08;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002298,1.22e-44,6;UBERON:0003076,2.90e-40,15;UBERON:0003057,2.90e-40,15;UBERON:0002148,3.61e-34,2;UBERON:0006331,3.61e-34,2;UBERON:0009662,3.61e-34,2;UBERON:0000988,2.62e-23,3;UBERON:0002240,3.27e-23,3;UBERON:0005174,3.27e-23,3;UBERON:0001137,3.27e-23,3;UBERON:0001896,4.09e-23,3;UBERON:0005290,4.09e-23,3;UBERON:0010096,4.09e-23,3;UBERON:0004733,5.14e-23,12;UBERON:0002028,5.14e-23,12;UBERON:0007277,5.14e-23,12;UBERON:0004732,2.40e-21,13;UBERON:0001049,1.77e-11,56;UBERON:0005068,1.77e-11,56;UBERON:0006241,1.77e-11,56;UBERON:0007135,1.77e-11,56;UBERON:0002680,1.04e-08,9;UBERON:0000125,1.04e-08,9;UBERON:0002308,1.04e-08,9;UBERON:0001895,1.04e-08,9;UBERON:0010092,1.04e-08,9;UBERON:0001017,3.31e-08,81;UBERON:0003075,3.31e-08,82;UBERON:0007284,3.31e-08,82;UBERON:0002346,7.10e-08,86;UBERON:0001016,1.68e-07,89 | |||
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|short_description=p@chr3:167375550..167375561,- | |||
}} |
Latest revision as of 17:58, 29 July 2015
Short description: | p@chr3:167375550..167375561, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:167375550..167375561, - |
Coexpression cluster: | C1033_locus_medulla_spinal_globus_amygdala_pineal_hippocampus |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brainstem | 1.22e-44 | 6 |
posterior neural tube | 2.90e-40 | 15 |
chordal neural plate | 2.90e-40 | 15 |
locus ceruleus | 3.61e-34 | 2 |
brainstem nucleus | 3.61e-34 | 2 |
hindbrain nucleus | 3.61e-34 | 2 |
pons | 2.62e-23 | 3 |
spinal cord | 3.27e-23 | 3 |
dorsal region element | 3.27e-23 | 3 |
dorsum | 3.27e-23 | 3 |
medulla oblongata | 4.09e-23 | 3 |
myelencephalon | 4.09e-23 | 3 |
future myelencephalon | 4.09e-23 | 3 |
segmental subdivision of hindbrain | 5.14e-23 | 12 |
hindbrain | 5.14e-23 | 12 |
presumptive hindbrain | 5.14e-23 | 12 |
segmental subdivision of nervous system | 2.40e-21 | 13 |
neural tube | 1.77e-11 | 56 |
neural rod | 1.77e-11 | 56 |
future spinal cord | 1.77e-11 | 56 |
neural keel | 1.77e-11 | 56 |
regional part of metencephalon | 1.04e-08 | 9 |
neural nucleus | 1.04e-08 | 9 |
nucleus of brain | 1.04e-08 | 9 |
metencephalon | 1.04e-08 | 9 |
future metencephalon | 1.04e-08 | 9 |
central nervous system | 3.31e-08 | 81 |
neural plate | 3.31e-08 | 82 |
presumptive neural plate | 3.31e-08 | 82 |
neurectoderm | 7.10e-08 | 86 |
nervous system | 1.68e-07 | 89 |