FFCP PHASE1:Hg19::chr2:25475094..25475112,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1788 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2978 | |||
|TSSclassifier=strong | |||
|UniProt=E9PEB8,Q8WVA9,Q9Y6K1 | |||
|association_with_transcript=67bp_to_ENST00000380746,ENST00000402667,NM_153759,uc002rgb.2_5end | |||
|cluster_id=chr2:25475094..25475112,- | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_3_at_DNMT3A_5end | |||
|id=chr2:25475094..25475112,- | |||
|ontology_enrichment_celltype=CL:0002319!7.62e-09!25;CL:0000133!1.18e-08!59;CL:0000039!1.78e-07!7;CL:0000586!1.78e-07!7;CL:0000221!9.63e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:0002321;2.67e-14;15!CL:0002322;3.19e-13;5!CL:0000039;1.95e-12;7!CL:0000586;1.95e-12;7!CL:0000333;3.34e-11;5!CL:0002319;5.05e-11;25!CL:0000540;5.65e-10;6!CL:0000404;5.65e-10;6!CL:0000064;2.51e-07;3!CL:0000067;2.51e-07;3!CL:0005012;2.51e-07;3!CL:0002304;2.51e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000133,7.52e-15,59;CL:0000047,2.59e-13,8;CL:0002322,3.18e-13,5;CL:0000039,1.66e-12,7;CL:0000586,1.66e-12,7;CL:0000221,4.10e-11,72;CL:0002319,6.14e-11,25;CL:0000540,5.84e-10,6;CL:0000031,5.84e-10,6;CL:0000404,5.84e-10,6;CL:0000064,2.73e-07,3;CL:0000067,2.73e-07,3;CL:0005012,2.73e-07,3;CL:0002304,2.73e-07,3;CL:0000333,4.85e-07,41 | |||
|ontology_enrichment_development_v019=CL:0000031;5.65e-10;6!UBERON:0009117;1.12e-08;10!UBERON:0005564;1.12e-08;10!CL:0000133;8.17e-08;59 | |||
|ontology_enrichment_disease=DOID:3095!1.72e-14!22;DOID:2994!1.72e-14!22;DOID:171!3.43e-08!10;DOID:0050687!9.34e-08!143 | |||
|ontology_enrichment_disease_v019=DOID:3095;6.18e-24;22!DOID:2994;6.18e-24;22!DOID:171;3.46e-10;10!DOID:169;2.90e-09;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,4.30e-24,22;DOID:2994,4.30e-24,22;DOID:0050687,2.42e-10,143;DOID:171,2.87e-10,10;DOID:169,2.63e-09,6;DOID:305,3.12e-07,106;DOID:14566,9.44e-07,239 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000013;3.34e-11;5!UBERON:0002410;3.34e-11;5!UBERON:0001778;2.51e-07;3!UBERON:0001775;2.51e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,2.98e-11,5;UBERON:0002410,2.98e-11,5;UBERON:0001778,2.73e-07,3;UBERON:0001775,2.73e-07,3 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,1.09220686065086,0.527533956456907,0.247532705920093,0.331397375727916,0,0,0,0,1.10808952269109,0.612002073732759,0.626909442956176,1.71741592278634,0.547497700291537,0.753255837568817,0.61130724598361,1.23150884174919,0.787107813136792,0,0,0,0,0,0,0,0,0.880801318004542,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.853460445133014,0,0,0,0,1.1384259382189,0,0,2.64342657158052,1.12101712596307,0.790152254325231,0,0,0,0.167186495390678,0,0,0,0,0,0,0.270803863765016,0,0.130059347559878,0,0,0,0.296573126324121,0,0,0.113309342697566,0,0,0,0.318565414324097,0,0,0.602300476311091,0.511946444617674,0,0.236777252044017,0.821127996921047,0.403213486449465,0.267440195783507,0.144824403882799,0,0,0,0,0.50133791063589,0,0,0.486634870302636,1.41802225746102,3.1042115644759,3.42555664203192,0.0654895377488563,0,0,0,0,0.26591592103773,1.19245312152671,0.571994910780128,0.371457501329565,0.198762407366705,0,0,0,0,0.275118041940067,0,0,0,0,0.402829317109147,0,0,0,0,1.07159673940896,1.79623498100936,0.450445921933289,0,0,0.366403487860815,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0.576175924479999,0,0,0,0,0,0.161872944368132,0,0,0,0.103325781175765,0,0,0,0,0,0.250237039743928,0,0,0,0,0.226864366320042,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,25.1265834626967,28.8914894940838,21.2634915451219,17.2077351325515,25.4844059384385,23.7235283399289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.21446636387394,2.80483547606892,1.2347220339942,0,0,0,0.590789906681404,0.882926198829301,3.44367627920718,0.343135620597051,0,0,0,0.185176890317059,0,0,0,0.115930404975077,0.352226082707465,0.288732895522148,0,0.190254152234598,1.58040879591855,0.858486162094873,0,0,0,0,0.16798212819886,0.141775097242386,0,0,0,0,0,0,0.144119953416961,0.12624243342638,0,0,0,0,0,0.300343057843917,0,0.112131084345361,0,0,0,0,0.845302752556,0,0,0,0,0.266422179016099,0,1.08524321078289,0,0,0,0,0,0,0,0,0,0,0.479249710983165,0,0,0,0,0,0,0,0,0.256686072559497,1.01637849688985,2.60279707715243,2.31986643833309,1.50764638800914,0,0,0,0,0,0.500170521059677,0,0,0,0.157702415033935,0,0,0,1.03473071292505,0.664225598535437,0.184369168541703,0,0,0.343143423810856,0.413536052245775,0,0.213455115606889,0.303127571446259,0,1.5119514666484,0,0.153461973288062,0.280660094433074,0,0,0.160853921143607,0,0.154209693802656,0,0.0821271560138091,0,0,10.1521937656963,0,0,0,0,0,0.902399225814824,0.462092022626489,0,2.92278449306521,0.527758144464379,0,0.680374821106063,2.15915916102139,0,2.98041081298238,5.01689773854853,0.254876273045038,0,2.23874754722178,0,0,0,0.984043937099117,0.650756789328606,1.54561517471583,0,0,0,0,0,0.290012154876366,0,0.15350367472613,0,0.107420244868274,0.290033387828457,0.0852266274161009,0,0,0.192190067365106,0,0,0,0.31481234683064,0,0,0,0,0,0,0.372158369359667,0.632758849437452,0,0,0,0,0,0,0.274537029736055,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0.349934720244983,0,0,0,0.941438007767792,0,0,0,0,0,0.764637207142375,0,0.238231775457789,0,0,0,0,0,0,0,0.185803175125719,0.144269212976445,1.42283686696828,1.59426272728822,0,0.5745161103971,0,3.89546328329467,0,1.36940807419915,0,0,5.0787533340481,0.321176150207399,0,0.425846237690326,0,0,0,0,0,0,0,0,0.66614393599564,0,0,0,0,0,0.284136146806413,0,0.296964680832639,0,0,0,0,0,4.22250816255987,0,0.276283915531148,1.76352923497993,0,0,0,0,0.179021174675609,0,0.0986434056369336,0,0,0,0,0,0.260427761085233,0.262379999988587,0,0.1137934482855,0,0,0,0,0.520874984799877,0.885741385813839,0,0,0,0,0,0,0,0,0,0.46112780877612,1.6156375993759,4.56318962072434,0,0.274792780205587,0,0,0.784901281975124,0,0.225595660617181,0,0,0,0,0.210998064528027,0,2.82706142867882,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,1.22429104652196,0.063186579628488,0,0,0,0,0,0,4.83836228250648,0.138674673013139,0,0,0.174118413160805,0,0,0,0,0,0,0.176512253383001,0,0,0,0,2.93327074102205,0.0801588202515337,0.213452994739353,0,0.288180834308212,0,0.343189995723929,0,0.124252535565433,0,0,0,0,0.288950589901519,0,0,3.83239764200917,0,0,0,0,0,0,0,0,0.201550417460179,0,13.9795139432945,8.03588459533681,9.72507128897764,10.0431280342735,0.0984274815147488,0,0,0,18.8081183704072,20.7684549261823,27.8345026479554,0.449947783103001,0,0,0,0,1.78345599658994,0.528001682597033,0,0,0,0,0,1.08599920350743,0,0,0,0.164185041498678,0,0,0,0,0,0,0.342173675768659,0,0,0.471612915298998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07522952404346,0,0,0,0,2.34167452903441,8.84018274526033,0,0.233713309847224,0,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0,0.521745061811734,0,0,0,0,0.322231671127465,0,0,0,0,0,0,0,6.86213092399762,1.82696004375648,0,0.231522474323834,0,0,0.926404341482917,0,0,0.192914038270915,0.168942440653073,0,0,0,0,0.194860308839388,0,0.327130788511688,0,0,0,0,0,0,0,0,0,0.622077260032973,3.32525365389494,1.94084660514027,5.03251013938868,7.20783612067292,1.69732529954025,11.4790456854909,0.9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| |||
|short_description=p3@DNMT3A | |||
}} |
Latest revision as of 13:41, 16 September 2015
Short description: | p3@DNMT3A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_DNMT3A_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | 67bp_to_ENST00000380746, ENST00000402667, NM_153759, uc002rgb.2_5end |
EntrezGene: | DNMT3A |
HGNC: | 2978 |
UniProt: | E9PEB8Q8WVA9Q9Y6K1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neurectodermal cell | 7.52e-15 | 59 |
neuronal stem cell | 2.59e-13 | 8 |
embryonic stem cell | 3.18e-13 | 5 |
germ line cell | 1.66e-12 | 7 |
germ cell | 1.66e-12 | 7 |
ectodermal cell | 4.10e-11 | 72 |
neural cell | 6.14e-11 | 25 |
neuron | 5.84e-10 | 6 |
neuroblast | 5.84e-10 | 6 |
electrically signaling cell | 5.84e-10 | 6 |
ciliated cell | 2.73e-07 | 3 |
ciliated epithelial cell | 2.73e-07 | 3 |
multi-ciliated epithelial cell | 2.73e-07 | 3 |
non-pigmented ciliary epithelial cell | 2.73e-07 | 3 |
migratory neural crest cell | 4.85e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 2.98e-11 | 5 |
autonomic nervous system | 2.98e-11 | 5 |
ciliary epithelium | 2.73e-07 | 3 |
ciliary body | 2.73e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 4.30e-24 | 22 |
germ cell cancer | 4.30e-24 | 22 |
cell type cancer | 2.42e-10 | 143 |
neuroectodermal tumor | 2.87e-10 | 10 |
neuroendocrine tumor | 2.63e-09 | 6 |
carcinoma | 3.12e-07 | 106 |
disease of cellular proliferation | 9.44e-07 | 239 |