FFCP PHASE1:Hg19::chr2:224856711..224856721,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr2:224856711..224856721,- | |||
|coexpression_cluster_id=C354 | |||
|description=CAGE_peak_at_chr2:224856711..224856721,- | |||
|id=chr2:224856711..224856721,- | |||
|ontology_enrichment_celltype=CL:0000055!4.19e-19!180;CL:0000057!6.36e-12!75;CL:0002334!4.16e-08!12 | |||
|ontology_enrichment_celltype_v019=CL:0000135;1.48e-11;3!CL:0000388;1.48e-11;3!CL:0002541;2.63e-11;3!CL:0002579;4.39e-11;3!CL:0000499;1.67e-10;28!CL:0002334;1.16e-09;12!CL:0000153;1.36e-09;9!CL:0000447;1.36e-09;9!CL:1000306;1.47e-08;4!CL:0002547;1.47e-08;4!CL:0000327;1.05e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.34e-14,76;CL:0000135,1.39e-11,3;CL:0000388,1.39e-11,3;CL:0002541,1.65e-11,3;CL:0002579,6.51e-11,3;CL:0000499,1.28e-10,28;CL:0002334,1.13e-09,12;CL:0000153,1.16e-09,9;CL:0000447,1.16e-09,9;CL:1000306,1.44e-08,4;CL:0002547,1.44e-08,4;CL:0000134,6.57e-08,354;CL:0000327,8.37e-08,15;CL:0000048,1.02e-07,427;CL:0002320,1.44e-07,361;CL:0000723,1.84e-07,433;CL:0000034,3.96e-07,441 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;8.44e-12;3!DOID:127;8.44e-12;3!DOID:0060072;6.12e-09;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,8.48e-12,3;DOID:127,8.48e-12,3;DOID:0060072,6.14e-09,4 | |||
|ontology_enrichment_uberon=UBERON:0002199!2.11e-07!45;UBERON:0002416!2.11e-07!45;UBERON:0004923!5.13e-07!57;UBERON:0003102!5.43e-07!95;UBERON:0002097!9.52e-07!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;3.71e-13;9!UBERON:0000042;3.71e-13;9!UBERON:0007846;1.48e-11;3!UBERON:0000043;1.48e-11;3!UBERON:0007845;1.48e-11;3!UBERON:0003124;2.63e-11;3!UBERON:0000920;2.63e-11;3!UBERON:0003688;2.92e-09;6!UBERON:0002358;2.92e-09;6!UBERON:0003684;2.92e-09;6!UBERON:0001178;2.92e-09;6!UBERON:0004797;1.47e-08;4!UBERON:0000415;1.47e-08;4!UBERON:0007240;1.47e-08;4!UBERON:0005742;1.47e-08;4!UBERON:0005734;1.47e-08;4!UBERON:0004664;1.47e-08;4!UBERON:0004663;1.47e-08;4!UBERON:0005406;2.37e-08;2!UBERON:0005631;2.85e-08;10!UBERON:0000158;2.85e-08;10!UBERON:0004923;1.43e-07;55!UBERON:0002384;4.58e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004923,3.71e-12,66;UBERON:0007846,1.39e-11,3;UBERON:0000043,1.39e-11,3;UBERON:0007845,1.39e-11,3;UBERON:0000920,1.65e-11,3;UBERON:0004457,1.30e-09,12;UBERON:0000042,1.30e-09,12;UBERON:0003688,5.08e-09,6;UBERON:0002358,5.08e-09,6;UBERON:0003684,5.08e-09,6;UBERON:0001178,5.08e-09,6;UBERON:0000415,1.44e-08,4;UBERON:0007240,1.44e-08,4;UBERON:0005742,1.44e-08,4;UBERON:0005734,1.44e-08,4;UBERON:0004664,1.44e-08,4;UBERON:0004663,1.44e-08,4;UBERON:0005406,2.42e-08,2;UBERON:0002384,1.00e-07,371 | |||
|phase1_expression=0.181678379270557,1.2846031433459,0.422863212287913,1.0007329835313,0,4.36169262050184,0,0.631719873426831,0.261185628199839,0,0,0,0,0.123766352960047,0.662794751455832,0,0,0.730310090387373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0.722878304769133,2.00535164254356,2.462390822334,0.795285947051099,16.5455855902896,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,2.48485975847659,2.40597972162702,0.662045904066094,8.60509862246441,2.4826786753885,0,0,0.24666754841716,0,0.134710672069688,0.326923806226917,0,0,0,0.312160076830321,0,1.49448680551801,0.117434498643765,0.161872944368132,0.140450806702248,0,0,0.309977343527296,0,2.47266929278557,0,0,0,0,0,0,0.919463387397059,1.35214253015937,0.340296549480063,0.538168907066586,0,1.05965950579781,0.300091096084402,0.515262646192195,0,1.11670113798954,0.506328996723799,0.487185025805993,0,0.276149695926898,0.161646056818812,2.13005755509969,1.10827308050404,0,0.386521706326594,0,0.286804595389004,0,0,0.116193942869518,0.10366105501537,0.252320850875628,0,1.56449532329816,3.21620469096443,0,0,0,0.118306800039844,0,0,0.220587945464788,0,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219500570817251,0,0.603173834469785,0.0925884451585296,0,1.03993478527958,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0.141775097242386,0.358234090811393,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0.925447434329912,0.300343057843917,0.285826432630578,0,0,0,0.646358578788889,0,0,0.531876233169741,1.04007436911366,0,0,0,0,0,0,0,0,0.791951872933429,0,0,0,0,0,0,0,0,0,2.17171960001369,4.10952645100767,0.179060963239896,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0.271265023699736,0.415941723061614,1.07057393278297,1.26161932027148,0.234282829985426,0.300946099727719,4.5481500811197,1.03473071292505,0,0.184369168541703,2.60650843404249,0,0,0,0,0,0,0,0,1.73675465473144,0.153461973288062,1.68396056659844,3.84417447767103,1.02341449813341,7.56013429374955,7.42090332224955,0,0.710246901252508,0.164254312027618,0.519254429183621,0.116210378459959,0,2.40607764363942,0.184161977871793,0.114814448164607,0.182091168006717,0.655622074797121,0,0,0,0,0,0,0,0,0,0,0,0,0.831076008928724,0.447749509444357,0,0,0,0,0,0,0.457847324091717,0,0,0,3.21367859688319,0,0,0,0,0,0.145016693914229,0.255679882248303,0,0.165284915360978,0.960950336825531,0,0.10115778085555,0.464845549297286,1.88887408098384,0.6970372701606,0.308033580176089,0,0,0.55597265731176,0.858749320451947,0,0,0,0,0,0,0,0,0.274537029736055,0.353437207037059,0.202182481573316,0,0.421258456238981,0,5.36169677188826,0,0,0.282810863907425,0,0,2.65375590096488,0.876901770507525,0,0,0.202910376962704,0.92947049429925,0.281695602532241,0,0.294747123039363,0.35667105148125,0,11.6109199413715,1.97576935775941,0,0,0,0,0,0.0941438007767792,0,1.68471475667626,0.886860307073351,0,0,0.764637207142375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,1.19372242368845,0,0,0,0,0.111308705022906,0,0,0.19924798825107,0,0,0.20453736500431,0,0.933118762985422,0,0,0,0.197286811273867,0,0,0.969332746095218,0.278304294485554,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0.0769502585037971,0.113942055847001,0,0,0,6.38002319463839,1.92354946143911,19.1892519366708,0,0,0,0,0,0,0,0,0.421996129056054,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0.242780379534093,0,0,0,0.252746318513952,0,0,0.664653872707185,0.330991955875499,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0,0,0.19871461170299,0,0,0,0,0,0,0,0,0,0.124252535565433,0,0,0.209205692624666,0,0,0,0,0,0,0,0,0,0.717873024576814,0,0,0.223171457441873,0,1.80149941771202,0,0.157566364614447,0,0.0674035438541849,0,0,0,0,0.803765742325096,0.275078873194468,0,0,0,0.121499113316049,0,0,0.0524545881349981,0,1.43429871466276,0,0,0,0,10.3169924333205,6.04955043840887,5.55198512185996,0,0,0,0.113312091520126,0,0,0.129282956361551,0,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.732157589411779,0,0.573409195690071,0.332787154610557,0.0620964029413835,0,0,1.81978941049977,0.856396000634902,0.470531639396343,0,0,0.149254802886874,0,0,0.568209015825267,0.50313580350515,0,1.60188047877847,0,1.08806040407946,0.295710299979268,0.159296767163702,0,0.155262956876259,2.07353103920428,0.797525143673985,0.521745061811734,0.300515217994437,0,0,0.181848659202559,0,0,0.796191777397232,0,1.37358282073117,0,0,0,0,0,0.226705925512272,0,0.244736704506468,0.179088841081487,0,0,0,0.38582807654183,0,0.76872455576384,0,0,0,0,0,0,0.327609848846413,0.245772908753719,0,0,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0.636008701306837,0,0,1.05802783107205,0.3062454773532,0,0,0,0,0,0,0.322951291263702,0,0,0,0,0,0.381382095467167,0,0,0.150420656698515,0.20170506870352,0,0,0.49131575253029,0,0.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| |||
|short_description=p@chr2:224856711..224856721,- | |||
}} |
Latest revision as of 07:11, 29 July 2015
Short description: | p@chr2:224856711..224856721, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:224856711..224856721, - |
Coexpression cluster: | C354_Fibroblast_Preadipocyte_Chondrocyte_chorionic_tenocyte_Synoviocyte_Smooth |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.34e-14 | 76 |
fibrocyte | 1.39e-11 | 3 |
tendon cell | 1.39e-11 | 3 |
chorionic membrane mesenchymal stem cell | 1.65e-11 | 3 |
omentum preadipocyte | 6.51e-11 | 3 |
stromal cell | 1.28e-10 | 28 |
preadipocyte | 1.13e-09 | 12 |
GAG secreting cell | 1.16e-09 | 9 |
carbohydrate secreting cell | 1.16e-09 | 9 |
fibroblast of tunica adventitia of artery | 1.44e-08 | 4 |
fibroblast of the aortic adventitia | 1.44e-08 | 4 |
mesenchymal cell | 6.57e-08 | 354 |
extracellular matrix secreting cell | 8.37e-08 | 15 |
multi fate stem cell | 1.02e-07 | 427 |
connective tissue cell | 1.44e-07 | 361 |
somatic stem cell | 1.84e-07 | 433 |
stem cell | 3.96e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
organ component layer | 3.71e-12 | 66 |
dense regular connective tissue | 1.39e-11 | 3 |
tendon | 1.39e-11 | 3 |
regular connective tissue | 1.39e-11 | 3 |
egg chorion | 1.65e-11 | 3 |
cavity lining | 1.30e-09 | 12 |
serous membrane | 1.30e-09 | 12 |
omentum | 5.08e-09 | 6 |
peritoneum | 5.08e-09 | 6 |
abdominal cavity | 5.08e-09 | 6 |
visceral peritoneum | 5.08e-09 | 6 |
artery wall | 1.44e-08 | 4 |
tunica adventitia of artery | 1.44e-08 | 4 |
adventitia | 1.44e-08 | 4 |
tunica adventitia of blood vessel | 1.44e-08 | 4 |
aorta tunica adventitia | 1.44e-08 | 4 |
aorta wall | 1.44e-08 | 4 |
perirenal fat | 2.42e-08 | 2 |
connective tissue | 1.00e-07 | 371 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 8.48e-12 | 3 |
leiomyoma | 8.48e-12 | 3 |
benign neoplasm | 6.14e-09 | 4 |