FFCP PHASE1:Hg19::chr9:137734900..137734994,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr9:137734900..137734994,+
|short_description=p4@COL5A1
|description=CAGE_peak_4_at_COL5A1_5end
|association_with_transcript=0bp_to_AK122763_5end
|EntrezGene=...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1289 | |EntrezGene=1289 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=2209 | |HGNC=2209 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_AK122763_5end | |||
|cluster_id=chr9:137734900..137734994,+ | |||
|coexpression_cluster_id=C396 | |||
|description=CAGE_peak_4_at_COL5A1_5end | |||
|id=chr9:137734900..137734994,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.38e-25!180;CL:0000057!1.05e-14!75;CL:0000183!9.51e-12!59;CL:0000680!6.61e-11!57;CL:0000056!6.61e-11!57;CL:0000355!6.61e-11!57;CL:0000187!2.48e-10!54;CL:0000393!1.42e-08!60;CL:0000211!1.42e-08!60;CL:0000192!2.80e-08!42;CL:0000514!2.80e-08!42;CL:0002334!7.06e-08!12;CL:0000222!7.87e-08!119 | |||
|ontology_enrichment_celltype_v019=CL:0000349;5.14e-14;19!CL:0002334;2.85e-10;12!CL:0000134;3.88e-08;55!CL:0000499;2.05e-07;28!CL:0000723;7.64e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,5.95e-14,19;CL:0000057,3.19e-13,76;CL:0002334,5.74e-10,12;CL:0000048,8.16e-09,427;CL:0000723,2.84e-08,433;CL:0000680,8.12e-08,58;CL:0000056,8.12e-08,58;CL:0000355,8.12e-08,58;CL:0000034,1.39e-07,441;CL:0000499,1.62e-07,28;CL:0000187,2.37e-07,55;CL:0000192,9.00e-07,43;CL:0000514,9.00e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002385!1.68e-11!63;UBERON:0001015!1.68e-11!63;UBERON:0000383!1.68e-11!63;UBERON:0001134!2.39e-11!61;UBERON:0002036!2.39e-11!61;UBERON:0003082!2.39e-11!61;UBERON:0004872!5.83e-11!84;UBERON:0000914!1.77e-09!83;UBERON:0002329!1.77e-09!83;UBERON:0003077!1.77e-09!83;UBERON:0003059!1.77e-09!83;UBERON:0007282!1.77e-09!83;UBERON:0009618!1.77e-09!83;UBERON:0007285!1.77e-09!83;UBERON:0000478!3.39e-09!24;UBERON:0004290!4.44e-09!70;UBERON:0005631!5.33e-08!14;UBERON:0000158!5.33e-08!14;UBERON:0000490!9.04e-08!138;UBERON:0000948!2.34e-07!24;UBERON:0005498!2.34e-07!24;UBERON:0004140!2.34e-07!24;UBERON:0009881!2.34e-07!24;UBERON:0004141!2.34e-07!24;UBERON:0003084!2.34e-07!24;UBERON:0007005!2.34e-07!24;UBERON:0004139!2.34e-07!24;UBERON:0004291!2.34e-07!24;UBERON:0002049!3.93e-07!79;UBERON:0007798!3.93e-07!79;UBERON:0000486!7.72e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;1.23e-11;24!UBERON:0005631;5.29e-10;10!UBERON:0000158;5.29e-10;10!UBERON:0000305;1.64e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000478,1.39e-11,24;UBERON:0005631,2.07e-09,14;UBERON:0000158,2.07e-09,14;UBERON:0004871,1.80e-08,8;UBERON:0001134,2.34e-08,62;UBERON:0002036,2.34e-08,62;UBERON:0003082,2.34e-08,62;UBERON:0005256,7.21e-08,122;UBERON:0002385,7.87e-08,64;UBERON:0001015,7.87e-08,64;UBERON:0000383,7.87e-08,64;UBERON:0007524,8.42e-08,73;UBERON:0002329,1.77e-07,71;UBERON:0003059,1.77e-07,71;UBERON:0007282,1.77e-07,71;UBERON:0004290,1.77e-07,71;UBERON:0009618,1.77e-07,71;UBERON:0000305,2.23e-07,7;UBERON:0003077,2.96e-07,72;UBERON:0007285,2.96e-07,72;UBERON:0003104,4.31e-07,160;UBERON:0009142,4.31e-07,160;UBERON:0000490,4.89e-07,148;UBERON:0007503,5.55e-07,78 | |||
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| ||
|short_description=p4@COL5A1 | |||
}} | }} |
Latest revision as of 09:23, 16 September 2015
Short description: | p4@COL5A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_COL5A1_5end |
Coexpression cluster: | C396_Mesenchymal_Chondrocyte_Smooth_Preadipocyte_Placental_Fibroblast_Hepatic |
Association with transcript: | 0bp_to_AK122763_5end |
EntrezGene: | COL5A1 |
HGNC: | 2209 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 5.95e-14 | 19 |
fibroblast | 3.19e-13 | 76 |
preadipocyte | 5.74e-10 | 12 |
multi fate stem cell | 8.16e-09 | 427 |
somatic stem cell | 2.84e-08 | 433 |
muscle precursor cell | 8.12e-08 | 58 |
myoblast | 8.12e-08 | 58 |
multi-potent skeletal muscle stem cell | 8.12e-08 | 58 |
stem cell | 1.39e-07 | 441 |
stromal cell | 1.62e-07 | 28 |
muscle cell | 2.37e-07 | 55 |
smooth muscle cell | 9.00e-07 | 43 |
smooth muscle myoblast | 9.00e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
extraembryonic structure | 1.39e-11 | 24 |
extraembryonic membrane | 2.07e-09 | 14 |
membranous layer | 2.07e-09 | 14 |
somatic layer of lateral plate mesoderm | 1.80e-08 | 8 |
skeletal muscle tissue | 2.34e-08 | 62 |
striated muscle tissue | 2.34e-08 | 62 |
myotome | 2.34e-08 | 62 |
trunk mesenchyme | 7.21e-08 | 122 |
muscle tissue | 7.87e-08 | 64 |
musculature | 7.87e-08 | 64 |
musculature of body | 7.87e-08 | 64 |
dense mesenchyme tissue | 8.42e-08 | 73 |
somite | 1.77e-07 | 71 |
presomitic mesoderm | 1.77e-07 | 71 |
presumptive segmental plate | 1.77e-07 | 71 |
dermomyotome | 1.77e-07 | 71 |
trunk paraxial mesoderm | 1.77e-07 | 71 |
amnion | 2.23e-07 | 7 |
paraxial mesoderm | 2.96e-07 | 72 |
presumptive paraxial mesoderm | 2.96e-07 | 72 |
mesenchyme | 4.31e-07 | 160 |
entire embryonic mesenchyme | 4.31e-07 | 160 |
unilaminar epithelium | 4.89e-07 | 148 |
epithelial vesicle | 5.55e-07 | 78 |