FFCP PHASE1:Hg19::chr2:189840417..189840430,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr2:189840417..189840430,+ | |||
|description=CAGE_peak_at_chr2:189840417..189840430,+ | |||
|id=chr2:189840417..189840430,+ | |||
|ontology_enrichment_celltype=CL:0000055!8.06e-20!180;CL:0000057!2.18e-19!75;CL:0002620!4.70e-12!23;CL:0002334!4.28e-08!12;CL:0000680!7.17e-07!57;CL:0000056!7.17e-07!57;CL:0000355!7.17e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.23e-09;23!CL:0002504;1.66e-07;3!CL:1000279;1.66e-07;3!CL:1000280;1.66e-07;3!CL:0000135;5.98e-07;3!CL:0000388;5.98e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.39e-19,76;CL:0002620,1.61e-09,23;CL:0002504,1.64e-07,3;CL:1000279,1.64e-07,3;CL:1000280,1.64e-07,3;CL:0000135,4.33e-07,3;CL:0000388,4.33e-07,3;CL:0000048,6.07e-07,427;CL:0000594,6.48e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;2.71e-09;5!DOID:450;2.71e-09;5!DOID:66;2.71e-09;5!DOID:423;2.71e-09;5!DOID:0080000;2.71e-09;5!DOID:11722;2.71e-09;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,3.01e-09,5;DOID:450,3.01e-09,5;DOID:66,3.01e-09,5;DOID:423,3.01e-09,5;DOID:0080000,3.01e-09,5;DOID:11722,3.01e-09,5 | |||
|ontology_enrichment_uberon=UBERON:0004290!4.61e-08!70;UBERON:0000914!5.96e-08!83;UBERON:0002329!5.96e-08!83;UBERON:0003077!5.96e-08!83;UBERON:0003059!5.96e-08!83;UBERON:0007282!5.96e-08!83;UBERON:0009618!5.96e-08!83;UBERON:0007285!5.96e-08!83;UBERON:0003102!1.68e-07!95;UBERON:0002385!2.43e-07!63;UBERON:0001015!2.43e-07!63;UBERON:0000383!2.43e-07!63;UBERON:0001134!2.55e-07!61;UBERON:0002036!2.55e-07!61;UBERON:0003082!2.55e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;7.42e-11;6!UBERON:0002358;7.42e-11;6!UBERON:0003684;7.42e-11;6!UBERON:0001178;7.42e-11;6!UBERON:0004457;1.62e-09;9!UBERON:0000042;1.62e-09;9!UBERON:0007846;5.98e-07;3!UBERON:0000043;5.98e-07;3!UBERON:0007845;5.98e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,1.67e-10,6;UBERON:0002358,1.67e-10,6;UBERON:0003684,1.67e-10,6;UBERON:0001178,1.67e-10,6;UBERON:0007846,4.33e-07,3;UBERON:0000043,4.33e-07,3;UBERON:0007845,4.33e-07,3;UBERON:0004797,4.92e-07,7 | |||
|phase1_expression=0.908391896352783,2.35510576280081,3.24195129420734,1.0007329835313,1.78784437770915,0,0,0,0,0.245733936501509,0,0.218441372130172,0,0,0,0,0,0,0.975865597581014,0,0,0,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,0,0.255725123687061,1.44575660953827,0,1.15877215168659,0,1.94653948121054,0,0,0.087834785693126,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.379891534993739,17.3456026865317,2.86836620748814,1.06400514659507,1.12135520028461,0,0,1.55605517699883,1.34710672069688,1.79808093424805,0.302714855289863,0,0,0,0,0.298897361103602,1.17434498643765,0.485618833104395,0.421352420106746,0.816616685019573,0.61417158655884,1.34323515528495,0,2.22540236350701,0,0,1.68336113954066,1.25118519871964,0,0,0,0.600952235626387,0,1.07633781413317,1.92201649936711,2.7551147150743,2.10063767259082,1.13357782162283,3.09168648054755,1.11670113798954,3.03797398034279,0.389748020644795,4.03894038790583,2.30124746605748,2.7479829659198,0.710019185033229,0.10075209822764,0.67824236924195,0,0,0,0,0,0.116193942869518,0,0,0,0,0.643240938192885,0,0,1.44375896333917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0.102827492703324,0,0,0,0,0.07333828582095,0.517086863031111,0,0,2.12750493267896,1.04007436911366,0,0,0.266422179016099,0.714889968290738,0.542621605391443,0,0,0,2.37585561880029,0.904318131178758,0,1.49959486773086,0,0,0,0.718874566474748,1.14861935834114,0,0.289562613335158,0.205476322550383,0.537182889719687,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,1.00034104211935,0,9.15071790735551,2.49800584316026,1.57702415033935,1.40569697991256,0,0,0,0,0,1.04260337361699,0.391602314925481,0,0,0,0,0,0,0,0.744323423456331,2.14846762603287,1.68396056659844,1.28139149255701,1.02341449813341,2.0911009748669,0,0.925258162815933,0.887808626565635,1.14978018419333,1.03850885836724,0.464841513839837,0,0.200506470303285,0,0.803701137152247,3.27764102412091,2.09799063935079,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6068392984416,0.580024309752732,0.462145851343933,0.767518373630648,0.689182862422653,3.54486808065303,2.75531718437034,1.70453254832202,1.51354460599453,0,0,0,0,0,3.46293581513704,0,0,0,0,0,0.286249773483982,0,0.949138274156178,2.09693213316207,0,0,0,0,3.05783177891635,7.96157386234559,3.76999687506197,0,0,0,0.48763373908959,2.19342140668156,0,0.9554993798559,10.6054073965285,1.13008116620243,0,0,0,0,1.31178950409327,0.202910376962704,0,0,0.286822704408103,0,0,1.06428319221179,0.422215270595328,2.30506425071931,0.379473173765715,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0.320472213382419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47748896947538,1.18785872333055,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0.622079175323615,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0,1.07730361905316,0.227884111694002,0,0,0,0,0.549585560411174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,3.21031058919516,0,0,0,0,0.394584402849391,4.83962864194656,0.30607276163049,0.442306057399416,0,0,0,0,0,0,0,0,0,0,0,1.04836000945218,0,0,0,0,0.0969890164884194,0.176512253383001,0.225980740780532,0,0,0,0,0,0.426905989478705,0,0,0.229073192331831,0,0,0,0,0.407712618220842,0.104602846312333,0,0.288950589901519,0,0,0,0,0,1.67569440763353,2.52076466412852,0.717873024576814,0,0,0,0.671834724867263,2.16179930125442,0,0,0,0,0,0,0.795229689809303,0,0,0,0,0,0,0,0,0,0.157363764404994,0,0,0,1.42939065274673,0,0,0,1.72844298240254,0.326587360109409,0,0,6.81552087141687,0,0,0,0,0,0,0,0.106787412567695,0.628817220398664,0,0.496166021811951,0,0,0,0,0,0.306345576763462,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0.597019211547496,0.233713309847224,2.77402930751307,0,2.0125432140206,3.55924488638614,0.686520205190771,0.453692771289717,0.466311601748341,0.887130899937803,1.27437413730962,0,0.931577741257556,2.07353103920428,0,1.5652351854352,2.10360652596106,2.28483127301277,0.406870733204662,0.363697318405119,0.107410557042488,0.464033759878494,1.59238355479446,0,3.77735275701072,3.36749488765919,0,0,0,0,0.226705925512272,0,0,0,0.308801447160972,1.97355644620836,0,0,0.168942440653073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0.109209638192014,0,0.425149840203366,0,0,0.636008701306837,0,0,0.705351887381368,0.6124909547064,0,0,0,0,0.252071696221718,0,0,0,0,0,0,0,0.762764190934334,0,0.994581110581374,0.526472298444801,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,1.48863353516788,0.175871244359621,0,0,0,0,0,0,0,0,0,0,0,0,0.156986185701028,0,0,1.82631744101899,0,0,0.285906176706625,0,0.348724276104376,0.173858272302579,0,0,0.17071847709395,0,0,0,0,0.846774100381858,0,0,0,0,0,0,0,0,1.1598144313382,27.19981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| |||
|short_description=p@chr2:189840417..189840430,+ | |||
}} |
Latest revision as of 04:14, 29 July 2015
Short description: | p@chr2:189840417..189840430, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:189840417..189840430, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.39e-19 | 76 |
skin fibroblast | 1.61e-09 | 23 |
enteric smooth muscle cell | 1.64e-07 | 3 |
smooth muscle cell of large intestine | 1.64e-07 | 3 |
smooth muscle cell of colon | 1.64e-07 | 3 |
fibrocyte | 4.33e-07 | 3 |
tendon cell | 4.33e-07 | 3 |
multi fate stem cell | 6.07e-07 | 427 |
skeletal muscle satellite cell | 6.48e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
omentum | 1.67e-10 | 6 |
peritoneum | 1.67e-10 | 6 |
abdominal cavity | 1.67e-10 | 6 |
visceral peritoneum | 1.67e-10 | 6 |
dense regular connective tissue | 4.33e-07 | 3 |
tendon | 4.33e-07 | 3 |
regular connective tissue | 4.33e-07 | 3 |
blood vessel layer | 4.92e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 3.01e-09 | 5 |
myotonic disease | 3.01e-09 | 5 |
muscle tissue disease | 3.01e-09 | 5 |
myopathy | 3.01e-09 | 5 |
muscular disease | 3.01e-09 | 5 |
myotonic dystrophy | 3.01e-09 | 5 |