FFCP PHASE1:Hg19::chr9:131446064..131446082,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr9:131446064..131446082,+
|short_description=p3@SET
|description=CAGE_peak_3_at_SET_5end
|association_with_transcript=130bp_to_ENST00000372692,NM_001122821,uc...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6418 | |EntrezGene=6418 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10760 | |HGNC=10760 | ||
|TSSclassifier=strong | |||
|UniProt=Q01105,Q5VXV3 | |UniProt=Q01105,Q5VXV3 | ||
|association_with_transcript=130bp_to_ENST00000372692,NM_001122821,uc004bvt.3_5end | |||
|cluster_id=chr9:131446064..131446082,+ | |||
|description=CAGE_peak_3_at_SET_5end | |||
|id=chr9:131446064..131446082,+ | |||
|ontology_enrichment_celltype=CL:0000066!3.00e-39!254;CL:0002321!1.40e-15!248;CL:0000220!8.86e-15!246;CL:0000548!3.24e-14!679;CL:0000004!3.24e-14!679;CL:0000255!3.24e-14!679;CL:0000012!1.77e-13!682;CL:0000223!9.51e-13!59;CL:0002076!1.07e-12!43;CL:0000076!8.74e-09!62;CL:0000077!1.33e-08!19;CL:0002251!4.31e-08!21;CL:0000063!5.78e-07!578 | |||
|ontology_enrichment_celltype_v019=CL:0002076;2.37e-10;42!CL:0000077;6.18e-09;19!CL:0002251;1.30e-08;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,8.52e-41,253;CL:0002321,1.01e-15,250;CL:0002076,6.49e-13,42;CL:0000223,8.70e-13,58;CL:0000076,5.52e-09,63;CL:0000077,5.58e-09,19;CL:0002251,1.24e-08,20 | |||
|ontology_enrichment_development_v019=UBERON:0008947;7.84e-07;29 | |||
|ontology_enrichment_disease=DOID:0050687!1.70e-30!143;DOID:14566!1.07e-29!239;DOID:162!5.44e-29!235;DOID:305!3.58e-26!106;DOID:3095!1.33e-07!22;DOID:2994!1.33e-07!22;DOID:299!2.00e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:305;2.08e-08;106!DOID:3095;4.89e-08;22!DOID:2994;4.89e-08;22!DOID:299;3.06e-07;25!DOID:1749;4.80e-07;14!DOID:0050687;4.95e-07;143 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,1.34e-31,143;DOID:14566,1.32e-30,239;DOID:162,7.26e-30,235;DOID:305,4.76e-27,106;DOID:3095,3.90e-08,22;DOID:2994,3.90e-08,22;DOID:299,2.92e-07,25;DOID:1749,5.52e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!8.79e-14!169;UBERON:0000925!8.79e-14!169;UBERON:0006595!8.79e-14!169;UBERON:0001007!1.41e-12!155;UBERON:0001555!1.41e-12!155;UBERON:0007026!1.41e-12!155;UBERON:0004921!2.38e-10!129;UBERON:0004185!2.38e-10!129;UBERON:0000077!5.16e-10!130;UBERON:0001048!1.74e-09!168;UBERON:0001041!4.09e-08!98;UBERON:0008947!4.12e-08!38;UBERON:0003258!4.12e-08!38;UBERON:0003104!9.38e-08!238;UBERON:0009142!9.38e-08!238;UBERON:0001004!1.18e-07!72;UBERON:0000466!1.36e-07!126;UBERON:0000464!4.36e-07!104;UBERON:0005911!8.07e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0000072;9.61e-08;37!UBERON:0000065;3.37e-07;44 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.43e-10,160;UBERON:0000925,1.43e-10,160;UBERON:0006595,1.43e-10,160;UBERON:0001007,3.19e-09,145;UBERON:0001555,3.19e-09,145;UBERON:0007026,3.19e-09,145;UBERON:0008947,2.15e-08,38;UBERON:0003258,2.15e-08,38;UBERON:0004921,1.52e-07,118;UBERON:0001004,2.59e-07,74 | |||
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| ||
|short_description=p3@SET | |||
}} | }} |
Latest revision as of 20:23, 15 September 2015
Short description: | p3@SET |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SET_5end |
Coexpression cluster: | NA |
Association with transcript: | 130bp_to_ENST00000372692, NM_001122821, uc004bvt.3_5end |
EntrezGene: | SET |
HGNC: | 10760 |
UniProt: | Q01105Q5VXV3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 8.52e-41 | 253 |
embryonic cell | 1.01e-15 | 250 |
endo-epithelial cell | 6.49e-13 | 42 |
endodermal cell | 8.70e-13 | 58 |
squamous epithelial cell | 5.52e-09 | 63 |
mesothelial cell | 5.58e-09 | 19 |
epithelial cell of alimentary canal | 1.24e-08 | 20 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.43e-10 | 160 |
endoderm | 1.43e-10 | 160 |
presumptive endoderm | 1.43e-10 | 160 |
digestive system | 3.19e-09 | 145 |
digestive tract | 3.19e-09 | 145 |
primitive gut | 3.19e-09 | 145 |
respiratory primordium | 2.15e-08 | 38 |
endoderm of foregut | 2.15e-08 | 38 |
subdivision of digestive tract | 1.52e-07 | 118 |
respiratory system | 2.59e-07 | 74 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 1.34e-31 | 143 |
disease of cellular proliferation | 1.32e-30 | 239 |
cancer | 7.26e-30 | 235 |
carcinoma | 4.76e-27 | 106 |
germ cell and embryonal cancer | 3.90e-08 | 22 |
germ cell cancer | 3.90e-08 | 22 |
adenocarcinoma | 2.92e-07 | 25 |
squamous cell carcinoma | 5.52e-07 | 14 |