FFCP PHASE1:Hg19::chr9:130911723..130911741,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr9:130911723..130911741,+
|short_description=p1@LCN2
|description=CAGE_peak_1_at_LCN2_5end
|association_with_transcript=0bp_to_ENST00000277480,ENST00000373013...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3934 | |EntrezGene=3934 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6526 | |HGNC=6526 | ||
|TSSclassifier=strong | |||
|UniProt=P80188 | |UniProt=P80188 | ||
|association_with_transcript=0bp_to_ENST00000277480,ENST00000373013,ENST00000540948,NM_005564,uc004bto.1,uc010mxq.1,uc011map.1_5end | |||
|cluster_id=chr9:130911723..130911741,+ | |||
|coexpression_cluster_id=C484 | |||
|description=CAGE_peak_1_at_LCN2_5end | |||
|id=chr9:130911723..130911741,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.41e-18!254;CL:0000223!2.06e-16!59;CL:0002076!3.32e-16!43;CL:0002368!3.40e-08!13;CL:0002251!2.86e-07!21 | |||
|ontology_enrichment_celltype_v019=CL:0002076;4.41e-14;42!CL:0002368;1.13e-09;13!CL:0002251;5.59e-09;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.89e-20,253;CL:0002076,2.80e-19,42;CL:0000223,7.92e-18,58;CL:0002368,1.31e-09,13;CL:0002251,5.79e-09,20 | |||
|ontology_enrichment_development_v019=CL:0000223;4.00e-10;58!UBERON:0006595;1.69e-08;86 | |||
|ontology_enrichment_disease=DOID:305!6.83e-13!106;DOID:299!9.65e-09!25;DOID:1749!1.92e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;3.97e-10;14!DOID:299;1.94e-09;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.11e-13,106;DOID:1749,3.97e-10,14;DOID:299,1.87e-09,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.10e-23!169;UBERON:0000925!1.10e-23!169;UBERON:0006595!1.10e-23!169;UBERON:0007023!7.80e-21!115;UBERON:0001007!1.01e-19!155;UBERON:0001555!1.01e-19!155;UBERON:0007026!1.01e-19!155;UBERON:0004921!1.17e-17!129;UBERON:0004185!1.17e-17!129;UBERON:0000077!1.03e-16!130;UBERON:0001041!2.23e-14!98;UBERON:0000062!3.08e-13!511;UBERON:0000466!2.09e-12!126;UBERON:0001004!4.84e-12!72;UBERON:0000467!5.25e-11!625;UBERON:0005177!5.86e-11!107;UBERON:0000480!7.72e-11!626;UBERON:0000464!8.38e-11!104;UBERON:0000922!1.49e-10!612;UBERON:0002050!1.92e-10!605;UBERON:0005423!1.92e-10!605;UBERON:0000481!3.63e-10!347;UBERON:0000923!3.86e-10!604;UBERON:0005291!3.86e-10!604;UBERON:0006598!3.86e-10!604;UBERON:0002532!3.86e-10!604;UBERON:0005911!3.91e-10!82;UBERON:0000468!1.85e-09!659;UBERON:0000065!1.76e-08!53;UBERON:0000161!5.10e-08!35;UBERON:0003104!1.11e-07!238;UBERON:0009142!1.11e-07!238;UBERON:0000064!1.55e-07!219;UBERON:0001048!2.84e-07!168;UBERON:0002553!4.90e-07!70;UBERON:0002530!5.19e-07!59 | |||
|ontology_enrichment_uberon_v019=UBERON:0001041;1.78e-07;14!UBERON:0004921;2.22e-07;33!UBERON:0001004;3.02e-07;65!UBERON:0002075;3.34e-07;18!UBERON:0002294;4.03e-07;7!UBERON:0001173;4.03e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,4.71e-24,160;UBERON:0000925,4.71e-24,160;UBERON:0006595,4.71e-24,160;UBERON:0001007,5.29e-20,145;UBERON:0001555,5.29e-20,145;UBERON:0007026,5.29e-20,145;UBERON:0004921,1.91e-18,118;UBERON:0001041,2.53e-15,87;UBERON:0001004,2.14e-14,74;UBERON:0005177,1.36e-13,101;UBERON:0005911,1.32e-11,82;UBERON:0007023,3.67e-11,114;UBERON:0000065,2.46e-10,54;UBERON:0000161,4.91e-09,36;UBERON:0008947,1.67e-07,38;UBERON:0003258,1.67e-07,38;UBERON:0000166,2.58e-07,22;UBERON:0005181,3.23e-07,35;UBERON:0002075,3.44e-07,18;UBERON:0009569,3.58e-07,112;UBERON:0000922,4.87e-07,592;UBERON:0005178,6.19e-07,34;UBERON:0002224,6.19e-07,34;UBERON:0001008,7.50e-07,48 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.522371256399677,18.9215131106162,62.1043039495461,0.218441372130172,0.527533956456907,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0,0,0,0,132.563761298081,138.946242111191,14.5527155917111,344.782959179598,87.6509223644708,485.487015348992,0,0,0.587200878669695,0,0,0.217010870715852,0,0,0,6.83371722263954,0,0,7.67015821788759,0,0.309706370895104,10.0692337312753,0,0.47296445977717,16.2030469946211,0,0,7.34145124216158,0,0.224723484445085,16.8346140803996,0,0.639337125799041,6.92687730392104,0.398927315243264,0.426224750532694,11.6083695451434,0,0,9.04495194924276,0,0.434377689410233,146.506679637275,0,2.53169909952708,0,0,0.419317291016752,0,0,0,0,0,0,0,1.09227722252426,0,0,0,0.574752439954483,0,0,1.1384259382189,5.28513470433845,0.764546456250458,0,8.96813700770458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0.289648807765598,0,0,0,0.361439152384566,0,0.724232594804119,6.36228757640879,16.058950719987,0.283604451492204,0.443458794925128,0.087834785693126,36.2812039128664,121.674626289709,167.965352581347,0,0,0,0,0.571994910780128,2.22874500797739,0,0,0,0,0,0,0,0,0,0,1.61131726843659,0,11.7149787623121,0.367663080345869,0,0,0,0,0,0,0,43.4875377539009,193.890132074163,48.4064397878213,0,0,0,0,1.41867352879343,0,0,0,0,0,0,0,0,0,0,2.85235910772225,0,0,0.323745888736263,0.421352420106746,0,0,0.103325781175765,0,0,0,0,0,0.250237039743928,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,310.376930180255,100.097826256836,219.118710877199,0,0,0,0.310983165046111,0,0,0,0,0,0,0,1.18306800039844,1.18009283054671,1.44606617930089,0.55146986366197,0.217879444092406,2.37270619111097,1.61797569792197,1.56977172100277,2.30848294167834,0,0,1.2347220339942,0,19.0132552232746,53.0726697005918,99.8434942291573,0,7.62528318967304,1.02940686179115,64.2039169640459,807.044588389708,24.4285402960263,3.42577247086559,0,0,1.44331342025273,0,0,23.531730985055,109.26458096808,59.3592954971947,0,3.43394464837949,0,0,0,86.2351272678348,28.0530154092095,66.0671953149521,2.5971971583826,3.48760726216754,21.0860473540866,0.492663237895943,0.176096868026452,1.4512968087854,0.720599767084807,6.05963680446624,0.571481048629521,0,0,47.9002848863575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.80863626235752,2.61460037580088,0.399891964728228,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0.641715181398742,0,0,0,0,0.637938751653163,23.2192177423627,95.731666945288,70.450637284126,0,1.00034104211935,0,0,0,0,0,0,0,5.17365356462525,0,0.184369168541703,0,0,0,3.51505644408909,25.885704098234,4.37582986994122,0,4.99306318531491,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0.604297247958111,135.742880395324,5696.59038051923,0,0,1.18011973463482,646.117845683414,320.46081769147,7.84349769176855,14.6139224653261,46.3371650839724,0,0,0,0,0.270946437543853,0.501689773854853,284.696796991308,864.319049285873,12.0892367549976,0,0,0.256450125116389,0,5.53143270929315,86.7605318073822,0,0,243.488588110377,102.70951887377,0,0,0,0,0,0,0,0.170453254832202,0,207.432568778028,238.700063667462,196.013126391681,896.864885065306,0,0.94443704049192,0,0,0,0,0,0.715624433709956,0,0,0,0,0,0,0,0,0,0.117812402345686,0.202182481573316,0,0.421258456238981,0,0.243713489631284,0,0,0,0,0,2.65375590096488,1.75380354101505,0,0,0,1.239293992399,0,0,0,0,0,0,0,0,0,95.452335823708,516.803054438092,369.140438679884,87.4595909216278,226.445826025067,207.219915071179,96.6677734709953,20.2156592182124,22.8351424154476,25.9976650428408,26.7734177971856,1.19115887728894,2.87953591160336,46.6900784058756,25.9215089874295,19.0350042310625,0.106824071127473,0.962479855263359,80.6182310577594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,105.360124249828,0.586032717087576,0.36408156524854,0,1.13654458722565,0.71623345421307,0.593929361665277,0.921482106297696,0.994147647766298,0.422008249231538,9.68385733699281,0,0,127.319464492434,124.327761989016,0,0,0.615424027305347,0,366.662872681094,6156.18015474485,0,24.9567816261442,45.5017875459186,0,0.969332746095218,0.649376687132959,3.99227596002388,4.16684417736373,0,13.0499923578263,490.677349007075,7.11910220819746,1.18193840883968,0,0,0,1.77148277162768,0.482385754501632,0,0.884634079449797,0.295547618953547,0.87754158861589,4.35753854075961,473.761883058694,409.067574206185,23.8138896720233,0,0,0,7.97502899329799,17.5867379331576,11.1937302963913,0,0,0,0,0,0,0,0,5.69694774225673,1936.92050161645,0,0.865554558968364,51.7536204160822,18.4876309811979,6.11030144933625,0,0,0,4.31367251076333,7.2231988256891,0,0,227.362287199088,1.21390189767046,1.97292201424695,21.7783288887595,0,11.5631440720133,0,0,4.6525771089503,3.64091151463049,7.22045712336618,32.2575560386989,1242.03605887402,2.08012009519708,115.764345469532,238.513495306595,767.078669179927,42.9827603875394,0,0.483781656445426,0.511625219603299,0.0821154570532092,349.257448374798,0.264768380074501,806.751244586501,0.137041924646751,1.39100228192093,0.189932387867636,376.045308999026,2201.72231584888,234.15793522907,703.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| ||
|short_description=p1@LCN2 | |||
}} | }} |
Latest revision as of 07:03, 25 September 2015
Short description: | p1@LCN2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LCN2_5end |
Coexpression cluster: | C484_squamous_pharyngeal_bile_transitionalcell_Prostate_signet_trachea |
Association with transcript: | 0bp_to_ENST00000277480, ENST00000373013, ENST00000540948, NM_005564, uc004bto.1, uc010mxq.1, uc011map.1_5end |
EntrezGene: | LCN2 |
HGNC: | 6526 |
UniProt: | P80188 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.89e-20 | 253 |
endo-epithelial cell | 2.80e-19 | 42 |
endodermal cell | 7.92e-18 | 58 |
respiratory epithelial cell | 1.31e-09 | 13 |
epithelial cell of alimentary canal | 5.79e-09 | 20 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 4.71e-24 | 160 |
endoderm | 4.71e-24 | 160 |
presumptive endoderm | 4.71e-24 | 160 |
digestive system | 5.29e-20 | 145 |
digestive tract | 5.29e-20 | 145 |
primitive gut | 5.29e-20 | 145 |
subdivision of digestive tract | 1.91e-18 | 118 |
foregut | 2.53e-15 | 87 |
respiratory system | 2.14e-14 | 74 |
trunk region element | 1.36e-13 | 101 |
endo-epithelium | 1.32e-11 | 82 |
adult organism | 3.67e-11 | 114 |
respiratory tract | 2.46e-10 | 54 |
orifice | 4.91e-09 | 36 |
respiratory primordium | 1.67e-07 | 38 |
endoderm of foregut | 1.67e-07 | 38 |
oral opening | 2.58e-07 | 22 |
thoracic segment organ | 3.23e-07 | 35 |
viscus | 3.44e-07 | 18 |
subdivision of trunk | 3.58e-07 | 112 |
embryo | 4.87e-07 | 592 |
thoracic cavity element | 6.19e-07 | 34 |
thoracic cavity | 6.19e-07 | 34 |
renal system | 7.50e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.11e-13 | 106 |
squamous cell carcinoma | 3.97e-10 | 14 |
adenocarcinoma | 1.87e-09 | 25 |