FFCP PHASE1:Hg19::chr21:47532226..47532238,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1292 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2212 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-93bp_to_ENST00000460886_5end | |||
|cluster_id=chr21:47532226..47532238,+ | |||
|coexpression_cluster_id=C198 | |||
|description=CAGE_peak_28_at_COL6A2_5end | |||
|id=chr21:47532226..47532238,+ | |||
|ontology_enrichment_celltype=CL:0000055!7.06e-38!180;CL:0000057!8.77e-24!75;CL:0000680!5.81e-16!57;CL:0000056!5.81e-16!57;CL:0000355!5.81e-16!57;CL:0000187!3.95e-15!54;CL:0000183!1.83e-14!59;CL:0000393!1.81e-13!60;CL:0000211!1.81e-13!60;CL:0000048!2.08e-13!430;CL:0000723!1.76e-12!436;CL:0000034!7.51e-12!444;CL:0002620!3.58e-10!23;CL:0000192!4.95e-10!42;CL:0000514!4.95e-10!42;CL:0000359!5.50e-08!32;CL:0002570!3.03e-07!8;CL:0000499!3.39e-07!27;CL:0002334!5.10e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0002620;3.52e-10;23!CL:0002570;2.71e-08;8!CL:0002320;9.98e-08;188!CL:0000134;4.46e-07;55!CL:0000723;9.32e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.23e-16,76;CL:0000048,1.95e-11,427;CL:0000723,5.89e-11,433;CL:0000034,2.43e-10,441;CL:0002620,3.93e-10,23;CL:0002570,3.65e-08,8;CL:0000187,5.73e-08,55;CL:0002320,8.60e-08,361;CL:0000680,2.76e-07,58;CL:0000056,2.76e-07,58;CL:0000355,2.76e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!9.80e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;5.98e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,7.61e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!9.86e-21!83;UBERON:0002329!9.86e-21!83;UBERON:0003077!9.86e-21!83;UBERON:0003059!9.86e-21!83;UBERON:0007282!9.86e-21!83;UBERON:0009618!9.86e-21!83;UBERON:0007285!9.86e-21!83;UBERON:0004290!4.67e-19!70;UBERON:0002385!2.69e-15!63;UBERON:0001015!2.69e-15!63;UBERON:0000383!2.69e-15!63;UBERON:0000486!4.74e-15!82;UBERON:0001134!6.18e-15!61;UBERON:0002036!6.18e-15!61;UBERON:0003082!6.18e-15!61;UBERON:0005256!6.50e-13!143;UBERON:0002100!7.05e-09!216;UBERON:0003102!1.41e-08!95;UBERON:0002199!4.28e-08!45;UBERON:0002416!4.28e-08!45;UBERON:0002097!2.43e-07!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0002067;1.88e-10;9!UBERON:0002199;2.75e-08;46!UBERON:0002416;2.75e-08;46!UBERON:0003102;1.56e-07;50!UBERON:0002384;2.26e-07;198!UBERON:0001013;2.42e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,1.89e-13,73;UBERON:0002329,7.89e-13,71;UBERON:0003059,7.89e-13,71;UBERON:0007282,7.89e-13,71;UBERON:0004290,7.89e-13,71;UBERON:0009618,7.89e-13,71;UBERON:0003077,1.55e-12,72;UBERON:0007285,1.55e-12,72;UBERON:0000486,1.75e-11,83;UBERON:0002199,2.61e-11,46;UBERON:0002416,2.61e-11,46;UBERON:0007503,6.12e-11,78;UBERON:0002067,1.25e-10,9;UBERON:0004016,1.25e-10,9;UBERON:0010083,1.25e-10,9;UBERON:0005256,9.88e-10,122;UBERON:0003102,1.54e-09,99;UBERON:0002097,2.48e-09,41;UBERON:0003104,1.52e-08,160;UBERON:0009142,1.52e-08,160;UBERON:0002384,4.73e-08,371;UBERON:0001134,2.39e-07,62;UBERON:0002036,2.39e-07,62;UBERON:0003082,2.39e-07,62;UBERON:0001013,2.99e-07,14;UBERON:0002385,5.97e-07,64;UBERON:0001015,5.97e-07,64;UBERON:0000383,5.97e-07,64 | |||
|phase1_expression=0.908391896352783,2.5692062866918,0.563817616383885,4.00293193412522,3.5756887554183,0.872338524100369,0,0,3.3954131665979,0,0,0,0,0.247532705920093,1.98838425436749,1.34465029290355,1.20538905604795,1.46062018077475,0.487932798790507,0.492484232307152,2.04000691244253,0.626909442956176,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,2.43806866313962,0.670700859703636,0.12786256184353,0.361439152384566,2.00535164254356,2.462390822334,0.795285947051099,3.89307896242109,0.0945348171640679,0,0.43917392846563,0.0654895377488563,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.47880366186723,0.25326102332916,0.794455084879313,4.87622255272983,0,1.68203280042692,0,0.49333509683432,0,0.67355336034844,0.817309515567294,0.756787138224657,1.15235184896,0.234321431833797,1.24864030732128,0,1.79338416662161,1.40921398372518,3.0755859429945,1.68540968042698,0,0.982674538494144,2.16984140469107,1.18800285728205,2.47266929278557,0.910161361938026,0.718618141816238,0.168336113954066,0.625592599359821,0.277064115484183,1.31693286264251,1.5324389789951,2.40380894250555,0.226864366320042,0.89694817844431,1.70845911054854,0.423863802319124,3.90118424909723,0.515262646192195,1.03056216018252,0.18611685633159,0.675105328965065,1.16924406193438,1.51460264546469,0.644349290496095,1.77810662500693,2.84007674013291,1.0075209822764,1.01736355386293,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,1.56449532329816,7.07565032012174,1.38134921352481,0.928735856063958,2.88751792667834,0,0,0,0,0,0,0,0,0,0,1.40241773803446,1.6462960453256,5.88034845542168,0,0,0,0,0,0,0,0,0,0,0.325808305310325,2.07986957055916,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71072446022705,0.411309970813294,0,0,0.112131084345361,0.43596006883328,0.22001485746285,0.129271715757778,7.15312891703765,0.845302752556,0.531876233169741,2.08014873822732,0.771622122786426,0,0.799266537048298,0.428933980974443,0.542621605391443,0.823240336780769,0.977208552881205,0.710783897485092,0,0,0,0,0,0,0,0.479249710983165,0,1.42636905040718,0.289562613335158,0.821905290201534,0.358121926479791,0,0,0.431255149719035,0.128343036279748,0,0,0,0,0.637938751653163,0,0,0,0.858840442033979,2.50085260529839,1.89885516589815,1.24782516918484,1.60586089917446,0.473107245101804,0.35142424497814,0.601892199455438,2.27407504055985,3.10419213877515,0.664225598535437,0.368738337083406,0.60818530127658,0.587403472388222,2.74514739048685,0,0,0.106727557803444,0,0,0.30239029332968,0.248107807818777,0.306923946576125,3.64858122762996,0.512556597022804,2.04682899626681,0.804269605718038,1.48418066444991,1.54209693802656,2.30830242907065,0.328508624055237,0.519254429183621,2.5566283261191,0,0,0,0.803701137152247,1.63882051206045,3.67148361886388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0.206082023295445,0,0.082509499920588,0,0,0,0.580024309752732,2.46477787383431,2.30255512089194,0.689182862422653,0.322260734604821,2.32026710262766,1.44885266607372,0.356128142586949,0,0,0,0,0,3.1481234683064,0.6970372701606,1.23213432070436,0,0,0.55597265731176,0.429374660225974,0.372158369359667,0.632758849437452,0.571890581771475,0.511795582622668,0.42793898803392,0.636406495851874,1.56989728039846,0.179872457583315,1.37268514868027,0.942499218765491,0.404364963146632,0,1.26377536871694,0.48763373908959,1.70599442741899,2.11300293513511,1.09199929126389,0.848432591722276,1.13008116620243,1.10273068709225,0,2.19225442626881,0,2.62357900818653,0,1.239293992399,0.563391205064483,0,0.491245205065606,0.7133421029625,0,1.26664581178598,1.31717957183961,0.75894634753143,2.0996083214699,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47748896947538,0,0,0,0,0.445234820091624,0,0,0.996239941255349,1.38141957765574,0,0,0,2.79935628895627,0.0898683511473268,0,0,0.295930216910801,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0.344743373241465,0,0.173624994933292,0,0,0,0,0,0,0,0,0.461701551022782,0.227884111694002,0,0,0,0,0.641183153813036,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99052386215701,0.0884575645033392,0.611030144933625,0,0,0,0,2.40773294189637,0,0,0,0,0,3.62972148145992,0,0.252746318513952,0,0,0,0,0,0,0,0.138674673013139,0,0,0,1.22308667769421,0,0,0,0,0.193978032976839,0,0.90392296312213,0,0,0,0,0,1.49417096317547,0.799238438328521,0,0,0,0,0,0,0,0,0.305994652908965,0.288950589901519,0,0,0,0.429765441419957,0,1.67569440763353,0.916641696046735,0,0.199679000498991,0.858452096273142,0.446342914883745,0.0671834724867263,0.360299883542404,0,0,0,0,0.0984274815147488,0,0,0,0.160753148465019,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,1.62899880526114,0.864221491201268,0.326587360109409,0,0,0.170388021785422,0.113312091520126,0,0,0,0,0,0,0.213574825135389,0.157204305099666,0.414239055347196,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0.110929051536852,0,0,0,0,0,1.17632909849086,0,0,2.08956724041624,3.03827302801392,2.77402930751307,2.27283606330107,2.51567901752575,4.44905610798268,1.60188047877847,2.26846385644859,0.466311601748341,0.147855149989634,0.796483835818512,2.24901556081802,0.931577741257556,1.24411862352257,1.59505028734797,5.21745061811734,0.450772826991655,0.380805212168795,0.406870733204662,3.81882184325375,1.07410557042488,4.64033759878494,3.98095888698616,0,4.12074846219351,2.02049693259551,0,0,0,0.260994291965212,0,0.231522474323834,0.244736704506468,0.179088841081487,0.308801447160972,0,0,0.192914038270915,0,0,0,0.303859956177382,0,0,0,0,1.63804924423206,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,3.52675943690684,1.531227386766,0,0,0,0,0.504143392443436,0,0,0,0,0,0,0,0.381382095467167,0,0,0,1.81534561833168,0,0,0.49131575253029,0,0,0,0,0,0,0,1.48863353516788,0,0,0.535701835878287,0,0,0,0.0887023701626388,0,0,0,0,0.118193840883968,0.111231401892069,0.235479278551542,0,0,0.913158720509496,0,0.47775168788705,0.0714765441766563,0,0,0,3.20684545892101,0,0.17071847709395,0,0,0.118332000730565,0.0852134047591577,1.27016115057279,0.22910686854405,0,0,0,0,0,0,0,0,0.971421986118279,0,0,0.118920090777569,0,0,0,0.0771741581079447,0.874238242015829,0,0.490296643507811,0,0,0,0,0.339854229375634,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0.436350690340377,2.645134202577,1.85997509083376,2.77305377178851,1.29787968637137,0,0,0,0,0,0,0,0,0.267964130156178,0,0,1.0661699095049,0.23806443146374,0,0,0,0.12729431655633,0.606351566874658,0,0.342233301085281,0,0.0717222053926763,1.66330178273007,0,0,0,0,4.69281884806909,0.611207220914332,0.406896178315738,0,0.603821380773079,0 | |||
|short_description=p28@COL6A2 | |||
}} |
Latest revision as of 22:55, 18 September 2015
Short description: | p28@COL6A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_28_at_COL6A2_5end |
Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
Association with transcript: | -93bp_to_ENST00000460886_5end |
EntrezGene: | COL6A2 |
HGNC: | 2212 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.23e-16 | 76 |
multi fate stem cell | 1.95e-11 | 427 |
somatic stem cell | 5.89e-11 | 433 |
stem cell | 2.43e-10 | 441 |
skin fibroblast | 3.93e-10 | 23 |
mesenchymal stem cell of adipose | 3.65e-08 | 8 |
muscle cell | 5.73e-08 | 55 |
connective tissue cell | 8.60e-08 | 361 |
muscle precursor cell | 2.76e-07 | 58 |
myoblast | 2.76e-07 | 58 |
multi-potent skeletal muscle stem cell | 2.76e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 1.89e-13 | 73 |
somite | 7.89e-13 | 71 |
presomitic mesoderm | 7.89e-13 | 71 |
presumptive segmental plate | 7.89e-13 | 71 |
dermomyotome | 7.89e-13 | 71 |
trunk paraxial mesoderm | 7.89e-13 | 71 |
paraxial mesoderm | 1.55e-12 | 72 |
presumptive paraxial mesoderm | 1.55e-12 | 72 |
multilaminar epithelium | 1.75e-11 | 83 |
integument | 2.61e-11 | 46 |
integumental system | 2.61e-11 | 46 |
epithelial vesicle | 6.12e-11 | 78 |
dermis | 1.25e-10 | 9 |
dermatome | 1.25e-10 | 9 |
future dermis | 1.25e-10 | 9 |
trunk mesenchyme | 9.88e-10 | 122 |
surface structure | 1.54e-09 | 99 |
skin of body | 2.48e-09 | 41 |
mesenchyme | 1.52e-08 | 160 |
entire embryonic mesenchyme | 1.52e-08 | 160 |
connective tissue | 4.73e-08 | 371 |
skeletal muscle tissue | 2.39e-07 | 62 |
striated muscle tissue | 2.39e-07 | 62 |
myotome | 2.39e-07 | 62 |
adipose tissue | 2.99e-07 | 14 |
muscle tissue | 5.97e-07 | 64 |
musculature | 5.97e-07 | 64 |
musculature of body | 5.97e-07 | 64 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 7.61e-07 | 14 |