FFCP PHASE1:Hg19::chr21:47532107..47532192,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1292 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2212 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-139bp_to_ENST00000460886_5end | |||
|cluster_id=chr21:47532107..47532192,+ | |||
|coexpression_cluster_id=C198 | |||
|description=CAGE_peak_5_at_COL6A2_5end | |||
|id=chr21:47532107..47532192,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.03e-44!180;CL:0000057!5.55e-24!75;CL:0000680!8.37e-21!57;CL:0000056!8.37e-21!57;CL:0000355!8.37e-21!57;CL:0000183!4.14e-20!59;CL:0000187!4.61e-20!54;CL:0000393!1.59e-18!60;CL:0000211!1.59e-18!60;CL:0000192!3.57e-15!42;CL:0000514!3.57e-15!42;CL:0000048!2.79e-12!430;CL:0000359!4.46e-12!32;CL:0000723!4.40e-11!436;CL:0000034!1.93e-10!444;CL:0002620!7.04e-09!23;CL:0000499!8.70e-08!27;CL:0000222!4.45e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000187;5.14e-13;55!CL:0000192;1.41e-12;43!CL:0000359;1.57e-12;32!CL:0000057;2.26e-11;73!CL:0000393;3.71e-11;61!CL:0000211;3.71e-11;61!CL:0002620;9.31e-11;23!CL:0000134;8.43e-10;55!CL:0000723;8.49e-10;61!CL:0002320;2.07e-09;188!CL:0000048;8.58e-09;58!CL:0000499;3.44e-08;28!CL:0002570;1.73e-07;8!CL:0002334;2.96e-07;12!CL:0002494;3.58e-07;16!CL:0000034;9.26e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.06e-28,76;CL:0000680,2.60e-24,58;CL:0000056,2.60e-24,58;CL:0000355,2.60e-24,58;CL:0000187,2.20e-23,55;CL:0000393,8.63e-21,61;CL:0000211,8.63e-21,61;CL:0000048,1.42e-19,427;CL:0000723,1.94e-18,433;CL:0000192,2.27e-17,43;CL:0000514,2.27e-17,43;CL:0000034,5.43e-17,441;CL:0000359,3.56e-13,32;CL:0002620,7.43e-11,23;CL:0002320,4.85e-08,361;CL:0000499,4.87e-08,28;CL:0002570,1.74e-07,8;CL:0002334,2.55e-07,12;CL:0002494,2.95e-07,16;CL:0000222,6.93e-07,121 | |||
|ontology_enrichment_development_v019=CL:0000355;1.03e-12;58!CL:0000514;1.41e-12;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;2.71e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,3.06e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!7.14e-26!83;UBERON:0002329!7.14e-26!83;UBERON:0003077!7.14e-26!83;UBERON:0003059!7.14e-26!83;UBERON:0007282!7.14e-26!83;UBERON:0009618!7.14e-26!83;UBERON:0007285!7.14e-26!83;UBERON:0004290!1.36e-25!70;UBERON:0002385!2.13e-21!63;UBERON:0001015!2.13e-21!63;UBERON:0000383!2.13e-21!63;UBERON:0001134!5.74e-21!61;UBERON:0002036!5.74e-21!61;UBERON:0003082!5.74e-21!61;UBERON:0000486!9.10e-21!82;UBERON:0005256!1.35e-17!143;UBERON:0002100!2.64e-12!216;UBERON:0003102!2.46e-10!95;UBERON:0003104!3.72e-10!238;UBERON:0009142!3.72e-10!238;UBERON:0000475!9.57e-10!365;UBERON:0001013!2.76e-09!14;UBERON:0002199!4.59e-09!45;UBERON:0002416!4.59e-09!45;UBERON:0000481!2.57e-08!347;UBERON:0004872!2.62e-08!84;UBERON:0007100!1.77e-07!27;UBERON:0001637!2.99e-07!42;UBERON:0003509!2.99e-07!42;UBERON:0004572!2.99e-07!42;UBERON:0004573!3.04e-07!33;UBERON:0004571!3.04e-07!33;UBERON:0000948!3.21e-07!24;UBERON:0005498!3.21e-07!24;UBERON:0004140!3.21e-07!24;UBERON:0009881!3.21e-07!24;UBERON:0004141!3.21e-07!24;UBERON:0003084!3.21e-07!24;UBERON:0007005!3.21e-07!24;UBERON:0004139!3.21e-07!24;UBERON:0004291!3.21e-07!24;UBERON:0000926!8.15e-07!448;UBERON:0004120!8.15e-07!448;UBERON:0006603!8.15e-07!448 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;4.46e-11;14!UBERON:0002385;4.77e-11;31!UBERON:0001015;4.77e-11;31!UBERON:0000383;4.77e-11;31!UBERON:0002384;9.39e-10;198!UBERON:0004573;2.76e-08;33!UBERON:0004571;2.76e-08;33!UBERON:0002199;3.68e-08;46!UBERON:0002416;3.68e-08;46!UBERON:0003102;1.15e-07;50!UBERON:0002204;2.12e-07;70!UBERON:0000948;2.55e-07;22!UBERON:0002097;4.34e-07;41!UBERON:0007100;4.74e-07;25!UBERON:0002067;5.57e-07;9!UBERON:0001134;7.65e-07;16!UBERON:0002036;7.65e-07;16 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,8.44e-30,73;UBERON:0002329,8.57e-30,71;UBERON:0003059,8.57e-30,71;UBERON:0007282,8.57e-30,71;UBERON:0004290,8.57e-30,71;UBERON:0009618,8.57e-30,71;UBERON:0003077,5.21e-29,72;UBERON:0007285,5.21e-29,72;UBERON:0007503,8.98e-25,78;UBERON:0000486,9.60e-25,83;UBERON:0001134,3.92e-24,62;UBERON:0002036,3.92e-24,62;UBERON:0003082,3.92e-24,62;UBERON:0002385,5.59e-24,64;UBERON:0001015,5.59e-24,64;UBERON:0000383,5.59e-24,64;UBERON:0005256,2.69e-20,122;UBERON:0003104,5.40e-19,160;UBERON:0009142,5.40e-19,160;UBERON:0002199,2.93e-12,46;UBERON:0002416,2.93e-12,46;UBERON:0000926,9.78e-12,315;UBERON:0004120,9.78e-12,315;UBERON:0006603,9.78e-12,315;UBERON:0003102,1.05e-11,99;UBERON:0000490,2.81e-11,148;UBERON:0001013,4.02e-11,14;UBERON:0002100,2.18e-10,199;UBERON:0004872,1.39e-09,83;UBERON:0001637,3.77e-09,42;UBERON:0003509,3.77e-09,42;UBERON:0004572,3.77e-09,42;UBERON:0002097,3.89e-09,41;UBERON:0004573,4.40e-09,33;UBERON:0004571,4.40e-09,33;UBERON:0002384,9.04e-09,371;UBERON:0000948,1.30e-07,24;UBERON:0005498,1.30e-07,24;UBERON:0004140,1.30e-07,24;UBERON:0009881,1.30e-07,24;UBERON:0004141,1.30e-07,24;UBERON:0003084,1.30e-07,24;UBERON:0007005,1.30e-07,24;UBERON:0004139,1.30e-07,24;UBERON:0004291,1.30e-07,24;UBERON:0000479,1.79e-07,773;UBERON:0007100,2.15e-07,27;UBERON:0002204,3.80e-07,167;UBERON:0002067,4.23e-07,9;UBERON:0004016,4.23e-07,9;UBERON:0010083,4.23e-07,9 | |||
|phase1_expression=7.99384868790449,11.9896293378951,6.3429481843187,10.007329835313,12.5149106439641,7.85104671690332,22.796989035148,17.6881564559513,23.7678921661853,0.491467873003018,0,0,0,6.68338305984252,9.94192127183747,12.101852636132,11.4511960324556,7.30310090387373,4.87932798790507,0.984968464614303,7.95602695852587,7.52291331547411,0.286235987131057,0.547497700291537,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0.553995408531877,0.200544447470142,0.217010870715852,0,0,0,0,0.377875943688809,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0.393010762749165,0.411202997999018,0,0,0.473447805734733,0,0,0,0,0,0,0,0,0,0,0.296573126324121,0,0,0,0.383220493601921,0,0,0,0,0,0.150575119077773,0.255973222308837,0,0,0,0,0.267440195783507,0.289648807765598,19.5045493051169,2.68280343881454,1.66221330396589,6.14446559053763,28.0749229956098,7.53201898596283,3.1811437882044,16.058950719987,0.850813354476611,0.886917589850256,0.702678285545008,0.916853528483988,0,0,0.324547393654683,0.348259474598534,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,7.45457927542978,3.79891534993739,3.44263870114369,20.3654000731658,4.965357350777,4.48542080113846,2.1349799145941,2.71334303258876,1.55605517699883,3.50247747381189,3.59616186849609,5.14615253992767,10.37116664064,2.57753575017176,11.2377627658915,3.99330275081114,12.8525865274549,5.87172493218824,5.6655530528846,6.74163872170793,3.0623125688234,7.49289335601785,6.61284999524899,11.8800285728205,21.5122228472344,4.55080680969013,17.965453545406,1.68336113954066,5.12985931475053,1.10825646193673,3.07284334616587,12.8724874235588,14.1223775372201,0.340296549480063,6.63741652048789,8.32873816392413,10.172731255659,8.70264178644767,5.04957393268351,3.09168648054755,3.7223371266318,8.10126394758078,3.80004320128675,3.78650661366172,8.46859067509154,12.6083924318673,9.23024940543197,3.92933183087797,3.05209066158878,0,0,0,0.365921118388786,0.132529768321485,0.464775771478074,0.414644220061482,0,0,15.6449532329816,28.302601280487,11.0507937081984,4.64367928031979,12.9938306700525,0,0,0,0,0,0,0,0,0,0.738155454624648,2.80483547606892,5.3504621473082,19.1111324801205,0,0,0,0,0,0,0,0,0,0,3.25808305310325,15.5990217791937,0,0,0.117408694235822,0.144366447761074,0,0.190254152234598,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0.621984346622316,0,0.75745460055828,0,0,0,5.13217338068116,1.64523988325318,0,0,2.24262168690721,0.43596006883328,1.3200891447771,3.36106460970222,35.7656445851882,12.67954128834,2.92531928243358,1.04007436911366,0.771622122786426,1.41849132023278,3.99633268524149,5.14720777169331,11.9376753186117,0.823240336780769,5.21177894869976,3.55391948742546,1.58390374586686,0.602878754119172,0,0.799783929456456,0,0,0,4.55287225434007,13.7834323000937,8.5582143024431,3.18518874668674,5.54786070886035,2.68591444859843,0,0,1.2937654491571,0.641715181398742,0.508189248444927,0,0,0.502548796003046,0,0,0,0,3.80343624329334,9.50323990013386,8.4092157346918,9.77463049194793,5.88815663030634,2.20783381047509,3.63138386477411,8.72743689210385,50.0296508923167,14.4862299809507,0,7.92787424729324,8.34082698893595,9.00685324328607,18.5297448857862,0,0,0.320182673410333,0,0,1.20956117331872,5.21026396419431,2.91577749247319,12.9103643439214,5.50998341799514,5.62877973973374,4.66476371316462,5.93672265779964,9.25258162815933,11.7190738706664,3.36721339656617,5.19254429183621,13.3641935228953,0,0,0,2.75554675595056,13.4747464324971,15.3415565502526,0.451199612907412,0.231046011313244,0,0,0,0,0,0.215915916102139,0,0.541892875087706,0.501689773854853,0,0,0.895499018888713,0,0,0,0.656029291399411,0,1.33953315142039,0.27470839445503,0.165018999841176,2.29706215198469,0,6.42735719376638,11.5038154767625,7.08623638727364,10.1312425319246,5.51346289938122,5.80069322288678,8.55598494093948,6.81813019328807,4.00644160410318,0,0,0,0,0.929691098594572,10.3888074454111,2.0911118104818,4.92853728281742,3.19383618190213,4.34966496037536,17.4204765957685,2.00374841438788,2.232950216158,2.84741482246853,4.00323407240032,2.303080121802,4.2793898803392,11.4553169253337,16.4839214441838,3.05783177891635,6.86342574340137,5.1837457032102,2.62837226045311,12.6808256938407,6.31887684358472,2.92580243453754,5.60541026151954,13.7345190783782,4.7774968992795,11.4538399882507,20.3414609916437,8.27048015319186,3.98063385144732,5.69986150829892,7.52408194546694,4.59126326432643,2.84074527747786,7.74558745249375,5.91560765317707,0.573645408816206,1.67023369722306,3.5667105148125,3.54761064070598,8.86652068250189,7.90307743103764,2.65631221636001,6.29882496440969,0,0,0,0.847294206991012,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0.766021480529467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.4906390476222,0.121360521749513,0,0,3.34242278632766,0.296964680832639,0,0,0,2.11486539543521,0,0.422250816255987,6.17668763578316,2.48655523978033,0,0.102268682502155,0,13.063662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| |||
|short_description=p5@COL6A2 | |||
}} |
Latest revision as of 22:54, 18 September 2015
Short description: | p5@COL6A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_COL6A2_5end |
Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
Association with transcript: | -139bp_to_ENST00000460886_5end |
EntrezGene: | COL6A2 |
HGNC: | 2212 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.06e-28 | 76 |
muscle precursor cell | 2.60e-24 | 58 |
myoblast | 2.60e-24 | 58 |
multi-potent skeletal muscle stem cell | 2.60e-24 | 58 |
muscle cell | 2.20e-23 | 55 |
electrically responsive cell | 8.63e-21 | 61 |
electrically active cell | 8.63e-21 | 61 |
multi fate stem cell | 1.42e-19 | 427 |
somatic stem cell | 1.94e-18 | 433 |
smooth muscle cell | 2.27e-17 | 43 |
smooth muscle myoblast | 2.27e-17 | 43 |
stem cell | 5.43e-17 | 441 |
vascular associated smooth muscle cell | 3.56e-13 | 32 |
skin fibroblast | 7.43e-11 | 23 |
connective tissue cell | 4.85e-08 | 361 |
stromal cell | 4.87e-08 | 28 |
mesenchymal stem cell of adipose | 1.74e-07 | 8 |
preadipocyte | 2.55e-07 | 12 |
cardiocyte | 2.95e-07 | 16 |
mesodermal cell | 6.93e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.06e-07 | 14 |