FFCP PHASE1:Hg19::chr21:42540070..42540107,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=25825 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=934 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=15bp_to_ENST00000544566_5end | |||
|cluster_id=chr21:42540070..42540107,+ | |||
|coexpression_cluster_id=C4078 | |||
|description=CAGE_peak_1_at_BACE2_5end | |||
|id=chr21:42540070..42540107,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.24e-19!254;CL:0000222!7.21e-15!119;CL:0002139!9.17e-15!24;CL:0000220!1.93e-14!246;CL:0002321!4.65e-14!248;CL:0000115!5.18e-13!35;CL:0002078!2.46e-12!44;CL:0000213!3.15e-12!57;CL:0000215!3.15e-12!57;CL:0000071!9.85e-11!18;CL:0002546!9.85e-11!18;CL:0000076!3.58e-09!62;CL:0000055!7.07e-07!180 | |||
|ontology_enrichment_celltype_v019=CL:0002139;7.42e-15;24!CL:0000115;1.93e-11;36!CL:0000071;8.57e-11;18!CL:0002078;7.16e-09;45!CL:0000213;6.39e-08;58!CL:0000215;6.39e-08;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,9.78e-20,253;CL:0000222,3.09e-15,121;CL:0002139,7.34e-15,24;CL:0002321,1.63e-14,250;CL:0000115,1.45e-13,36;CL:0002078,7.28e-13,45;CL:0000213,8.85e-13,58;CL:0000215,8.85e-13,58;CL:0000071,8.44e-11,18;CL:0002546,8.44e-11,18;CL:0000076,8.85e-09,63 | |||
|ontology_enrichment_development_v019=CL:0002546;8.57e-11;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!1.85e-17!79;UBERON:0007798!1.85e-17!79;UBERON:0000055!2.01e-17!69;UBERON:0004872!7.03e-16!84;UBERON:0003914!3.55e-15!118;UBERON:0001981!5.44e-15!60;UBERON:0007500!5.44e-15!60;UBERON:0004537!5.44e-15!60;UBERON:0006965!5.44e-15!60;UBERON:0000477!8.34e-14!286;UBERON:0004535!1.42e-13!110;UBERON:0001009!3.17e-13!113;UBERON:0000483!5.97e-12!309;UBERON:0000119!6.50e-12!312;UBERON:0001986!9.85e-11!18;UBERON:0004638!9.85e-11!18;UBERON:0004852!9.85e-11!18;UBERON:0004111!1.42e-10!241;UBERON:0003104!2.00e-10!238;UBERON:0009142!2.00e-10!238;UBERON:0000481!9.88e-10!347;UBERON:0001637!1.46e-09!42;UBERON:0003509!1.46e-09!42;UBERON:0004572!1.46e-09!42;UBERON:0000468!4.48e-09!659;UBERON:0003103!4.54e-09!69;UBERON:0004573!5.18e-09!33;UBERON:0004571!5.18e-09!33;UBERON:0001048!9.03e-09!168;UBERON:0000487!1.29e-08!22;UBERON:0000490!4.31e-08!138;UBERON:0006914!4.65e-08!25;UBERON:0002100!1.30e-07!216;UBERON:0000063!1.96e-07!97;UBERON:0000467!2.48e-07!625;UBERON:0001737!4.07e-07!9;UBERON:0000480!4.18e-07!626;UBERON:0000025!6.31e-07!194 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;8.57e-11;18!UBERON:0001986;8.57e-11;18!UBERON:0004852;8.57e-11;18!UBERON:0000055;9.02e-10;65!UBERON:0000487;1.04e-08;22!UBERON:0007500;1.72e-08;56!UBERON:0001981;1.72e-08;56!UBERON:0004537;1.72e-08;56!UBERON:0004573;1.80e-08;33!UBERON:0004571;1.80e-08;33!UBERON:0001637;1.84e-08;42!UBERON:0003509;1.84e-08;42!UBERON:0004572;1.84e-08;42!UBERON:0006914;3.54e-08;25!UBERON:0002049;7.98e-08;75!UBERON:0007798;7.98e-08;75!UBERON:0003914;1.84e-07;74!UBERON:0001737;3.67e-07;9!UBERON:0001557;3.67e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000055,6.61e-18,68;UBERON:0002049,7.42e-18,78;UBERON:0007798,7.42e-18,78;UBERON:0004872,4.18e-16,83;UBERON:0003914,1.95e-15,117;UBERON:0007500,2.12e-15,59;UBERON:0001981,2.12e-15,59;UBERON:0004537,2.12e-15,59;UBERON:0006965,2.12e-15,59;UBERON:0004535,1.24e-13,109;UBERON:0001009,2.79e-13,112;UBERON:0000483,3.36e-11,306;UBERON:0000119,3.64e-11,309;UBERON:0004638,8.44e-11,18;UBERON:0001986,8.44e-11,18;UBERON:0004852,8.44e-11,18;UBERON:0001048,4.63e-10,160;UBERON:0004111,7.25e-10,240;UBERON:0001637,1.27e-09,42;UBERON:0003509,1.27e-09,42;UBERON:0004572,1.27e-09,42;UBERON:0003103,3.16e-09,68;UBERON:0004573,4.56e-09,33;UBERON:0004571,4.56e-09,33;UBERON:0000487,9.98e-09,22;UBERON:0006914,3.68e-08,25;UBERON:0000490,7.35e-08,148;UBERON:0002100,1.43e-07,199;UBERON:0001737,3.70e-07,9 | |||
|phase1_expression=10.9007027562334,16.2716398157147,14.800212430077,7.00513088471913,8.93922188854576,11.3404008133048,22.796989035148,8.84407822797563,3.3954131665979,15.7269719360966,27.2142455509247,6.99012390816551,11.3419800638235,20.1739155324876,22.8664189252262,4.03395087871065,5.42425075221579,8.76372108464848,8.78279037822912,22.038669395745,28.7640974654397,35.733838248502,9.73202356245593,12.4555726816325,7.78364365487777,0,0,0,13.3743854128627,1.53531759238885,0.928896739896456,15.6301608161418,20.7832083956993,23.6642566506744,0,0,0.293600439334847,0,0,0,0,0.32389366601898,0,0.145398238779565,0,0.242584061187816,0.232429036905685,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,3.02699751316684,0,0.316462387440884,0,0,0,0,0,0,0,0.19891667719909,0,8.79981222306614,6.00752472388345,0,2.56038133539904,4.00395987036012,3.4485146397269,3.30522436392431,3.81621501814146,3.98449078376614,4.11066032559657,3.05818582500183,1.32171328579026,1.12101712596307,1.58030450865046,0,0,0,0.334372990781356,0,0.473447805734733,0,11.8095084298284,0.294605907474837,0,0,2.68991771423918,3.90178042679635,1.97325485524411,2.21080014228679,0.579606171470105,0,0.267540828089713,1.04535523804977,1.13309342697566,0,0,0,0,0,0,0,0.255973222308837,0,0,0,0,0,0.144824403882799,43.8852359365131,16.0968206328873,25.316787245019,14.8190052477672,15.0401373190767,18.9748939838679,7.95285947051099,11.6792368872633,15.1255707462509,19.5121869767056,14.9319135678314,9.82343066232845,55.737179108759,40.4155042635028,0,0.174129737299267,0.531831842075461,0,0,0,64.7965448015459,62.7971254427471,69.4281003215189,55.4001783085529,72.5734024643137,73.456517197998,50.3677869353713,304.673359060639,289.237971564295,311.624890483908,143.004407573747,141.410611663643,262.854835979379,50.0021789270381,85.0649045275848,30.4512073448712,36.8228171106919,38.5131263252962,19.9311628705648,62.6515335314965,57.8917510820087,0,0,28.3461133892647,4.96971951695318,34.1902381494365,13.5057364429483,54.4989579422746,26.6001286648768,9.53151920241922,17.0798393167528,15.2933880018639,16.1829738407878,24.9214743328923,8.3365570587864,7.87058623753643,5.76175924479999,9.37285727335187,1.24864030732128,13.1208518955223,1.19558944441441,7.75067691048848,6.63679071909339,5.33713065468544,3.47062091133319,8.96690516375906,3.40975077880026,9.50402285825643,3.95627086845691,8.19145225744224,12.2165084108761,4.88174730466792,4.12891115577482,3.3247693858102,2.63386572528503,6.12975591598039,11.8688066536211,10.776057400202,5.56107870635472,13.6676728843883,12.7159140695737,16.2049191885577,9.89304280689013,3.09168648054755,10.2364270982374,12.4894485858537,9.93857452644226,3.5340728394176,9.38908966151453,14.3864990568743,9.9402685904652,6.64963848302426,5.25637836162512,41.1645617237822,21.8196896472668,38.1450111867375,1.82960559194393,3.44577397635862,3.25343040034651,3.10983165046111,2.52320850875628,1.45990943630332,23.4674298494724,19.2972281457866,8.28809528114883,1.39310378409594,0.721879481669586,108.487335636537,104.185338468267,104.116764909664,114.70573164169,114.386708148513,103.687260551549,122.291996501269,110.865127795821,85.7986159990451,109.985162739073,60.3039627354817,12.7587943512734,16.1709582524096,0,0,3.54473944008842,0,3.44367627920718,38.2596216965712,33.693337620448,13.4882103909143,27.4444094683752,17.314039244645,5.53874119027552,12.4792174233549,12.9898207822746,14.3753702169095,32.0525735263793,192.729207761034,199.546755920519,231.349049117271,2.37061319387782,2.57545848628462,0,0,0.297262324577456,23.4334584966942,24.5253907170335,15.1699354049354,24.180801129769,15.9848666182679,41.788712029008,117.253850619235,346.030345671978,109.261916889987,97.8574483701168,129.903463995745,85.9761488715969,194.432108609163,132.455715347353,112.907814374985,103.752940137653,121.638938426787,124.906151059563,7.84917590417525,7.84728123899904,8.2138880119464,20.6834745212444,21.4593867511129,22.823174319012,10.1056484302251,3.12022310734098,8.74505072491283,0,3.99633268524149,3.0025378668211,5.96883765930587,13.9950857252731,16.2868092146868,2.84313558994037,7.91951872933429,5.12446941001296,12.2014684204041,8.59767724165691,0,0.502257091432126,0,6.70949595376431,5.7430967917057,22.8219048065149,16.7946315734392,13.7669136108757,32.0519124199413,0,0,0,0.128343036279748,8.63921722356376,5.20559415430487,0,6.1981018173709,1.27587750330633,2.24702107184155,17.9496875522415,2.90090859405225,15.7045109400499,5.00170521059677,4.88277042659524,21.8369404607347,18.3781858461077,11.8276811275451,12.2998485742349,44.2390766599747,93.2370766629538,20.694614258501,9.96338397803155,21.755561887921,3.90976265106373,14.6850868097055,13.3825935286234,0.620304078368662,1.2942852049117,0.853820462427555,5.75942385747893,8.32177197552485,11.4908311465279,10.6686357362074,8.74733247741956,12.0683840606222,15.5048370599398,16.8863392192012,13.0291676126322,10.3892646511494,10.3320494847779,14.7376232009895,8.45909706942234,10.904343012856,7.437464221437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| |||
|short_description=p1@BACE2 | |||
}} |
Latest revision as of 12:20, 18 September 2015
Short description: | p1@BACE2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_BACE2_5end |
Coexpression cluster: | C4078_Mast_Endothelial_Lymphatic_Melanocyte_melanoma_Hep2_Hepatic |
Association with transcript: | 15bp_to_ENST00000544566_5end |
EntrezGene: | BACE2 |
HGNC: | 934 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 9.78e-20 | 253 |
mesodermal cell | 3.09e-15 | 121 |
endothelial cell of vascular tree | 7.34e-15 | 24 |
embryonic cell | 1.63e-14 | 250 |
endothelial cell | 1.45e-13 | 36 |
meso-epithelial cell | 7.28e-13 | 45 |
lining cell | 8.85e-13 | 58 |
barrier cell | 8.85e-13 | 58 |
blood vessel endothelial cell | 8.44e-11 | 18 |
embryonic blood vessel endothelial progenitor cell | 8.44e-11 | 18 |
squamous epithelial cell | 8.85e-09 | 63 |
Ontology term | p-value | n |
---|---|---|
vessel | 6.61e-18 | 68 |
vasculature | 7.42e-18 | 78 |
vascular system | 7.42e-18 | 78 |
splanchnic layer of lateral plate mesoderm | 4.18e-16 | 83 |
epithelial tube | 1.95e-15 | 117 |
epithelial tube open at both ends | 2.12e-15 | 59 |
blood vessel | 2.12e-15 | 59 |
blood vasculature | 2.12e-15 | 59 |
vascular cord | 2.12e-15 | 59 |
cardiovascular system | 1.24e-13 | 109 |
circulatory system | 2.79e-13 | 112 |
epithelium | 3.36e-11 | 306 |
cell layer | 3.64e-11 | 309 |
blood vessel endothelium | 8.44e-11 | 18 |
endothelium | 8.44e-11 | 18 |
cardiovascular system endothelium | 8.44e-11 | 18 |
primordium | 4.63e-10 | 160 |
anatomical conduit | 7.25e-10 | 240 |
artery | 1.27e-09 | 42 |
arterial blood vessel | 1.27e-09 | 42 |
arterial system | 1.27e-09 | 42 |
compound organ | 3.16e-09 | 68 |
systemic artery | 4.56e-09 | 33 |
systemic arterial system | 4.56e-09 | 33 |
simple squamous epithelium | 9.98e-09 | 22 |
squamous epithelium | 3.68e-08 | 25 |
unilaminar epithelium | 7.35e-08 | 148 |
trunk | 1.43e-07 | 199 |
larynx | 3.70e-07 | 9 |