FFCP PHASE1:Hg19::chr20:62167895..62167907,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr20:62167895..62167907,- | |||
|description=CAGE_peak_at_chr20:62167895..62167907,- | |||
|id=chr20:62167895..62167907,- | |||
|ontology_enrichment_celltype=CL:0000066!2.18e-27!254;CL:0002368!1.65e-21!13;CL:0002076!4.65e-20!43;CL:0000223!3.47e-16!59;CL:0002202!3.11e-13!9;CL:0002632!3.11e-13!9;CL:0002159!2.95e-11!13;CL:0002150!6.72e-09!3;CL:0000861!6.72e-09!3;CL:0002328!1.80e-08!3;CL:0000068!2.26e-08!3;CL:0000069!2.26e-08!3;CL:0000307!2.26e-08!3;CL:0000377!2.26e-08!3;CL:0002621!3.87e-08!3;CL:0002251!6.12e-08!21;CL:0000362!7.75e-08!8 | |||
|ontology_enrichment_celltype_v019=CL:0000307;4.54e-13;3!CL:0002368;2.15e-11;13!CL:0002202;1.19e-09;9!CL:0002632;1.19e-09;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000068,6.56e-13,3;CL:0000069,6.56e-13,3;CL:0000307,6.56e-13,3;CL:0000377,6.56e-13,3;CL:0002368,2.99e-11,13;CL:0000066,5.61e-10,253;CL:0002202,1.63e-09,9;CL:0002632,1.63e-09,9;CL:0002076,2.37e-07,42 | |||
|ontology_enrichment_development_v019=UBERON:0008814;4.11e-19;2!UBERON:0010056;4.11e-19;2!CL:0000377;4.54e-13;3!UBERON:0009143;7.38e-11;1 | |||
|ontology_enrichment_disease=DOID:305!3.96e-21!106;DOID:0050687!4.22e-13!143 | |||
|ontology_enrichment_disease_v019=DOID:3111;1.98e-10;1!DOID:3603;1.98e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3111,4.75e-10,1;DOID:3603,4.75e-10,1;DOID:305,4.38e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0000065!4.02e-27!53;UBERON:0001004!6.29e-27!72;UBERON:0004119!1.90e-26!169;UBERON:0000925!1.90e-26!169;UBERON:0006595!1.90e-26!169;UBERON:0000072!1.03e-22!46;UBERON:0001737!1.14e-20!9;UBERON:0001007!1.41e-20!155;UBERON:0001555!1.41e-20!155;UBERON:0007026!1.41e-20!155;UBERON:0001557!2.33e-19!19;UBERON:0008947!1.01e-18!38;UBERON:0003258!1.01e-18!38;UBERON:0000077!8.62e-18!130;UBERON:0004921!1.23e-17!129;UBERON:0004185!1.23e-17!129;UBERON:0001041!5.52e-17!98;UBERON:0000063!2.46e-11!97;UBERON:0005911!2.69e-11!82;UBERON:0007196!2.28e-10!14;UBERON:0001558!2.28e-10!14;UBERON:0000161!8.66e-09!35;UBERON:0001723!1.76e-08!3;UBERON:0001033!1.76e-08!3;UBERON:0010056!1.76e-08!3;UBERON:0004815!1.80e-08!3;UBERON:0002031!1.80e-08!3;UBERON:0000166!2.60e-08!21;UBERON:0001949!3.87e-08!3;UBERON:0002294!5.18e-08!7;UBERON:0001173!5.18e-08!7;UBERON:0004912!5.18e-08!7;UBERON:0000365!6.83e-08!5;UBERON:0001048!9.69e-08!168;UBERON:0003104!1.94e-07!238;UBERON:0009142!1.94e-07!238;UBERON:0000344!5.47e-07!12;UBERON:0005178!9.38e-07!34;UBERON:0002224!9.38e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0001723;4.54e-13;3!UBERON:0001033;4.54e-13;3!UBERON:0002372;1.98e-10;1!UBERON:0001961;1.98e-10;1!UBERON:0001744;1.98e-10;1!UBERON:0001042;1.98e-10;1!UBERON:0001735;1.98e-10;1!UBERON:0003343;4.97e-10;4!UBERON:0004785;4.97e-10;4!UBERON:0000065;3.35e-08;44!UBERON:0000072;7.34e-08;37!UBERON:0000344;1.84e-07;20!UBERON:0000974;5.74e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000065,2.81e-15,54;UBERON:0000072,2.22e-14,47;UBERON:0001004,4.06e-13,74;UBERON:0001723,4.29e-13,3;UBERON:0001033,4.29e-13,3;UBERON:0010056,4.29e-13,3;UBERON:0001557,6.86e-12,19;UBERON:0002372,2.08e-10,1;UBERON:0001961,2.08e-10,1;UBERON:0001744,2.08e-10,1;UBERON:0001735,2.08e-10,1;UBERON:0003343,2.51e-10,4;UBERON:0004785,2.51e-10,4;UBERON:0001041,5.76e-09,87;UBERON:0004119,9.45e-09,160;UBERON:0000925,9.45e-09,160;UBERON:0006595,9.45e-09,160;UBERON:0001042,9.71e-09,10;UBERON:0009145,9.71e-09,10;UBERON:0008947,3.47e-08,38;UBERON:0003258,3.47e-08,38;UBERON:0006562,5.47e-08,11;UBERON:0000344,1.69e-07,20;UBERON:0001007,4.94e-07,145;UBERON:0001555,4.94e-07,145;UBERON:0007026,4.94e-07,145;UBERON:0000166,7.67e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0.6024118375565,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.82147644146271,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.966304265816484,0.272746120590835,0.860413786167011,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0.842923450390509,0.241011029883482,0.330881918197182,1.08939722046203,0.474541238222193,0.539325232640658,0.588664395376038,3.07797725557112,0,0,0,0,0,0.982827216677626,0,0,0.122988438543114,0,0.548751427043128,1.1240175325762,0.402115889646523,0,0,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.460404944679482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72279661398852,0.650060246036521,0,0.193341436584244,0,0,0,0,0,0,0.178064071293475,0.661139661443912,0.384380134730212,0.382838137483752,1.2138933702666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288666338176536,1.34060455107157,1.08890984861323,0,0,1.68471475667626,0.443430153536676,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179736702294654,0.179021174675609,0,0,0,0,0,0,0,0,0.0874599999961957,0,0.568967241427498,0.762760950878299,1.89110145414349,0,0,0,0,0,0,0,0,0,0.21787692703798,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586993856796269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.489961987071888,0.0870592065804026,0,0,1.06431964417994,1.38869702463753,1.56019368401098,2.03676934625681,0,0,0,0,0,1.17330829640882,0,0.213452994739353,0,0,0,0,0,0,0.942776138467182,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05656061679314,0,0,0,0,0,1.39879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.76665893301846,0,0,1.84841065840541,0,0,0,0,0,0,0,0.163771917510097,0.147856086217045,0,0,0,0,0,0,0,0,0.255524855279191,0,0,0,0,0,0,0,0,0,0,0.111231401892069,0.078493092850514,0,0.280272163313789,0,0,0,0,0,0,0,0,0,0,0.691259661814092,0,0,0,0,0,0,0,0,0.490751168076215,0,0,0,0,0.485710993059139,0,0,0,0,0,0.301925687133347,0,0,0.470317296361523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0,1.08858373948481,0.342233301085281,1.27968900727716,0.358611026963382,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr20:62167895..62167907,- | |||
}} |
Latest revision as of 16:21, 28 July 2015
Short description: | p@chr20:62167895..62167907, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:62167895..62167907, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
duct epithelial cell | 6.56e-13 | 3 |
branched duct epithelial cell | 6.56e-13 | 3 |
tracheal epithelial cell | 6.56e-13 | 3 |
tracheoblast | 6.56e-13 | 3 |
respiratory epithelial cell | 2.99e-11 | 13 |
epithelial cell | 5.61e-10 | 253 |
epithelial cell of tracheobronchial tree | 1.63e-09 | 9 |
epithelial cell of lower respiratory tract | 1.63e-09 | 9 |
endo-epithelial cell | 2.37e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
respiratory tract | 2.81e-15 | 54 |
segment of respiratory tract | 2.22e-14 | 47 |
respiratory system | 4.06e-13 | 74 |
tongue | 4.29e-13 | 3 |
gustatory system | 4.29e-13 | 3 |
future tongue | 4.29e-13 | 3 |
upper respiratory tract | 6.86e-12 | 19 |
tonsil | 2.08e-10 | 1 |
mucosa-associated lymphoid tissue | 2.08e-10 | 1 |
lymphoid tissue | 2.08e-10 | 1 |
tonsillar ring | 2.08e-10 | 1 |
mucosa of oral region | 2.51e-10 | 4 |
respiratory system mucosa | 2.51e-10 | 4 |
foregut | 5.76e-09 | 87 |
endoderm-derived structure | 9.45e-09 | 160 |
endoderm | 9.45e-09 | 160 |
presumptive endoderm | 9.45e-09 | 160 |
chordate pharynx | 9.71e-09 | 10 |
pharyngeal region of foregut | 9.71e-09 | 10 |
respiratory primordium | 3.47e-08 | 38 |
endoderm of foregut | 3.47e-08 | 38 |
pharynx | 5.47e-08 | 11 |
mucosa | 1.69e-07 | 20 |
digestive system | 4.94e-07 | 145 |
digestive tract | 4.94e-07 | 145 |
primitive gut | 4.94e-07 | 145 |
oral opening | 7.67e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
cystadenocarcinoma | 4.75e-10 | 1 |
mucinous cystadenocarcinoma | 4.75e-10 | 1 |
carcinoma | 4.38e-07 | 106 |