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FFCP PHASE1:Hg19::chr20:42984330..42984364,+: Difference between revisions

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{{FFCP|DPIdataset=robustDPI|EntrezGene=3172|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=5024|TSSclassifier=W|UniProt=|association_with_transcript=0bp_to_ENST00000316673_5end|description=CAGE_peak_2_at_HNF4A_5end|id=chr20:42984330..42984364,+|ontology_enrichment_celltype=CL:0000181!1.23e-19!12;CL:0000417!1.23e-19!12;CL:0000668!1.23e-19!12;CL:0000414!1.23e-19!12;CL:0000412!1.23e-19!12;CL:0000182!1.23e-19!12;CL:0000223!4.90e-11!59|ontology_enrichment_celltype_v019=CL:0000182;3.65e-25;12!CL:0002178;1.67e-07;3|ontology_enrichment_celltype_v019_2=CL:0000182,3.83e-25,12;CL:0000223,6.18e-14,58;CL:0002178,1.64e-07,3|ontology_enrichment_development_v019=UBERON:0004161;2.01e-27;11!UBERON:0009497;5.09e-23;13!UBERON:0003104;7.87e-14;31!UBERON:0001041;3.22e-09;30!CL:0000223;2.18e-08;58!UBERON:0006595;2.76e-07;86|ontology_enrichment_disease=DOID:305!3.24e-10!106;DOID:3119!1.21e-07!14;DOID:4929!2.45e-07!2;DOID:3493!3.33e-07!2;DOID:299!8.32e-07!25|ontology_enrichment_disease_v019=DOID:3119;2.33e-12;14!DOID:299;1.68e-11;25!DOID:4929;6.58e-11;2!DOID:3493;1.11e-10;2|ontology_enrichment_disease_v019_2=DOID:3119,2.33e-12,14;DOID:299,1.65e-11,25;DOID:4929,6.75e-11,2;DOID:3493,1.11e-10,2;DOID:305,1.74e-08,106|ontology_enrichment_uberon=UBERON:0009854!1.97e-26!23;UBERON:0009856!4.53e-26!26;UBERON:0004921!2.23e-24!129;UBERON:0004185!2.23e-24!129;UBERON:0008835!4.69e-24!22;UBERON:0003894!4.69e-24!22;UBERON:0005409!4.73e-24!35;UBERON:0009497!5.00e-24!25;UBERON:0000015!5.00e-24!25;UBERON:0002423!5.00e-24!25;UBERON:0006235!5.00e-24!25;UBERON:0004161!5.00e-24!25;UBERON:0007499!8.83e-24!25;UBERON:0001007!3.15e-21!155;UBERON:0001555!3.15e-21!155;UBERON:0007026!3.15e-21!155;UBERON:0002107!7.33e-21!19;UBERON:0006925!7.33e-21!19;UBERON:0008836!7.33e-21!19;UBERON:0000160!2.41e-19!27;UBERON:0004119!1.26e-18!169;UBERON:0000925!1.26e-18!169;UBERON:0006595!1.26e-18!169;UBERON:0005057!7.14e-17!26;UBERON:0000466!9.40e-17!126;UBERON:0000077!1.63e-15!130;UBERON:0003929!4.63e-14!54;UBERON:0001041!7.61e-14!98;UBERON:0000059!1.17e-13!11;UBERON:0002365!1.10e-11!31;UBERON:0002330!1.10e-11!31;UBERON:0005172!1.59e-11!55;UBERON:0005173!1.59e-11!55;UBERON:0005911!4.74e-11!82;UBERON:0005177!7.61e-11!107;UBERON:0004907!1.43e-10!5;UBERON:0000949!2.98e-10!45;UBERON:0002368!4.87e-10!35;UBERON:0002417!5.45e-10!61;UBERON:0000916!5.45e-10!61;UBERON:0001155!5.82e-09!9;UBERON:0001048!7.49e-09!168;UBERON:0003135!1.63e-08!11;UBERON:0000473!1.86e-08!8;UBERON:0001052!6.19e-08!4;UBERON:0009569!6.36e-08!113;UBERON:0002108!4.37e-07!14|ontology_enrichment_uberon_v019=UBERON:0005409;1.32e-45;22!UBERON:0000160;7.84e-38;17!UBERON:0004921;6.02e-27;33!UBERON:0002423;1.38e-25;25!UBERON:0002107;5.84e-24;19!UBERON:0006925;5.84e-24;19!UBERON:0000059;7.44e-22;11!UBERON:0004907;2.43e-16;5!UBERON:0002108;5.78e-16;4!UBERON:0001007;4.34e-15;81!UBERON:0001155;3.56e-14;9!UBERON:0002365;1.18e-13;31!UBERON:0002330;1.18e-13;31!UBERON:0001052;4.55e-12;4!UBERON:0002368;6.93e-12;33!UBERON:0000949;1.56e-10;43!UBERON:0000945;2.17e-09;5!UBERON:0010039;2.17e-09;5!UBERON:0001555;5.20e-09;54!UBERON:0002114;2.16e-07;2!UBERON:0005172;5.65e-07;52!UBERON:0005173;5.65e-07;52|ontology_enrichment_uberon_v019_2=UBERON:0005409,5.73e-40,25;UBERON:0000160,7.84e-38,17;UBERON:0009854,5.71e-28,23;UBERON:0009497,1.45e-25,25;UBERON:0000015,1.45e-25,25;UBERON:0002423,1.45e-25,25;UBERON:0006235,1.45e-25,25;UBERON:0004161,1.45e-25,25;UBERON:0008835,1.32e-24,22;UBERON:0003894,1.32e-24,22;UBERON:0009856,1.85e-24,26;UBERON:0004921,2.26e-24,118;UBERON:0002107,6.07e-24,19;UBERON:0006925,6.07e-24,19;UBERON:0008836,6.07e-24,19;UBERON:0000059,7.33e-22,11;UBERON:0007499,2.14e-21,25;UBERON:0001007,1.93e-20,145;UBERON:0001555,1.93e-20,145;UBERON:0007026,1.93e-20,145;UBERON:0004119,5.83e-18,160;UBERON:0000925,5.83e-18,160;UBERON:0006595,5.83e-18,160;UBERON:0003929,2.76e-17,54;UBERON:0004907,2.39e-16,5;UBERON:0002108,5.90e-16,4;UBERON:0001155,3.61e-14,9;UBERON:0002365,5.89e-14,31;UBERON:0002330,5.89e-14,31;UBERON:0000949,2.27e-13,45;UBERON:0002368,3.77e-12,35;UBERON:0001052,4.38e-12,4;UBERON:0005911,8.19e-12,82;UBERON:0011216,5.55e-11,223;UBERON:0005172,1.51e-10,54;UBERON:0005173,1.51e-10,54;UBERON:0001041,2.76e-09,87;UBERON:0002417,2.94e-09,60;UBERON:0000916,2.94e-09,60;UBERON:0002530,5.62e-08,59;UBERON:0005177,1.15e-07,101;UBERON:0002114,2.20e-07,2|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,2.09340350391728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.04574548582567,0.829288440122964,1.7662459561294,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0.4115740113314,0,6.3377517410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{{FFCP
|DHSsupport=supported 
|DPIdataset=robust
|EntrezGene=3172
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding
|HGNC=5024
|TSSclassifier=strong
|UniProt=
|association_with_transcript=0bp_to_ENST00000316673_5end
|cluster_id=chr20:42984330..42984364,+
|description=CAGE_peak_2_at_HNF4A_5end
|id=chr20:42984330..42984364,+
|ontology_enrichment_celltype=CL:0000181!1.23e-19!12;CL:0000417!1.23e-19!12;CL:0000668!1.23e-19!12;CL:0000414!1.23e-19!12;CL:0000412!1.23e-19!12;CL:0000182!1.23e-19!12;CL:0000223!4.90e-11!59
|ontology_enrichment_celltype_v019=CL:0000182;3.65e-25;12!CL:0002178;1.67e-07;3
|ontology_enrichment_celltype_v019_2=CL:0000182,3.83e-25,12;CL:0000223,6.18e-14,58;CL:0002178,1.64e-07,3
|ontology_enrichment_development_v019=UBERON:0004161;2.01e-27;11!UBERON:0009497;5.09e-23;13!UBERON:0003104;7.87e-14;31!UBERON:0001041;3.22e-09;30!CL:0000223;2.18e-08;58!UBERON:0006595;2.76e-07;86
|ontology_enrichment_disease=DOID:305!3.24e-10!106;DOID:3119!1.21e-07!14;DOID:4929!2.45e-07!2;DOID:3493!3.33e-07!2;DOID:299!8.32e-07!25
|ontology_enrichment_disease_v019=DOID:3119;2.33e-12;14!DOID:299;1.68e-11;25!DOID:4929;6.58e-11;2!DOID:3493;1.11e-10;2
|ontology_enrichment_disease_v019_2=DOID:3119,2.33e-12,14;DOID:299,1.65e-11,25;DOID:4929,6.75e-11,2;DOID:3493,1.11e-10,2;DOID:305,1.74e-08,106
|ontology_enrichment_uberon=UBERON:0009854!1.97e-26!23;UBERON:0009856!4.53e-26!26;UBERON:0004921!2.23e-24!129;UBERON:0004185!2.23e-24!129;UBERON:0008835!4.69e-24!22;UBERON:0003894!4.69e-24!22;UBERON:0005409!4.73e-24!35;UBERON:0009497!5.00e-24!25;UBERON:0000015!5.00e-24!25;UBERON:0002423!5.00e-24!25;UBERON:0006235!5.00e-24!25;UBERON:0004161!5.00e-24!25;UBERON:0007499!8.83e-24!25;UBERON:0001007!3.15e-21!155;UBERON:0001555!3.15e-21!155;UBERON:0007026!3.15e-21!155;UBERON:0002107!7.33e-21!19;UBERON:0006925!7.33e-21!19;UBERON:0008836!7.33e-21!19;UBERON:0000160!2.41e-19!27;UBERON:0004119!1.26e-18!169;UBERON:0000925!1.26e-18!169;UBERON:0006595!1.26e-18!169;UBERON:0005057!7.14e-17!26;UBERON:0000466!9.40e-17!126;UBERON:0000077!1.63e-15!130;UBERON:0003929!4.63e-14!54;UBERON:0001041!7.61e-14!98;UBERON:0000059!1.17e-13!11;UBERON:0002365!1.10e-11!31;UBERON:0002330!1.10e-11!31;UBERON:0005172!1.59e-11!55;UBERON:0005173!1.59e-11!55;UBERON:0005911!4.74e-11!82;UBERON:0005177!7.61e-11!107;UBERON:0004907!1.43e-10!5;UBERON:0000949!2.98e-10!45;UBERON:0002368!4.87e-10!35;UBERON:0002417!5.45e-10!61;UBERON:0000916!5.45e-10!61;UBERON:0001155!5.82e-09!9;UBERON:0001048!7.49e-09!168;UBERON:0003135!1.63e-08!11;UBERON:0000473!1.86e-08!8;UBERON:0001052!6.19e-08!4;UBERON:0009569!6.36e-08!113;UBERON:0002108!4.37e-07!14
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|short_description=p2@HNF4A
}}

Latest revision as of 07:55, 16 September 2015

Short description:p2@HNF4A
Species:Human (Homo sapiens)
DPI dataset: Robust
TSS-like-by-RIKEN-classifier(Yes/No): Yes
DHS support(Yes/No): Yes
Description: CAGE_peak_2_at_HNF4A_5end
Coexpression cluster:NA
Association with transcript: 0bp_to_ENST00000316673_5end
EntrezGene:HNF4A
HGNC: 5024
UniProt: NA
Genome view:ZENBU


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CAGE Expression




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Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data