FFCP PHASE1:Hg19::chr1:25140597..25140631,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr1:25140597..25140631,+ | |||
|coexpression_cluster_id=C1068 | |||
|description=CAGE_peak_at_chr1:25140597..25140631,+ | |||
|id=chr1:25140597..25140631,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.24e-18!180;CL:0000057!1.08e-10!75;CL:0000680!1.30e-10!57;CL:0000056!1.30e-10!57;CL:0000355!1.30e-10!57;CL:0000222!1.31e-09!119;CL:0000393!1.78e-09!60;CL:0000211!1.78e-09!60;CL:0000187!2.54e-09!54;CL:0000192!5.26e-09!42;CL:0000514!5.26e-09!42;CL:0000359!1.35e-08!32;CL:0000183!3.39e-08!59 | |||
|ontology_enrichment_celltype_v019=CL:0000359;4.60e-08;32!CL:0000192;5.88e-08;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.93e-14,76;CL:0000680,7.00e-12,58;CL:0000056,7.00e-12,58;CL:0000355,7.00e-12,58;CL:0000222,8.96e-12,121;CL:0000393,1.25e-10,61;CL:0000211,1.25e-10,61;CL:0000187,2.85e-10,55;CL:0000192,8.23e-10,43;CL:0000514,8.23e-10,43;CL:0000048,3.20e-09,427;CL:0000723,1.06e-08,433;CL:0000359,2.79e-08,32;CL:0000034,4.68e-08,441 | |||
|ontology_enrichment_development_v019=CL:0000514;5.88e-08;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.30e-12!83;UBERON:0002329!1.30e-12!83;UBERON:0003077!1.30e-12!83;UBERON:0003059!1.30e-12!83;UBERON:0007282!1.30e-12!83;UBERON:0009618!1.30e-12!83;UBERON:0007285!1.30e-12!83;UBERON:0000486!3.68e-12!82;UBERON:0004290!5.14e-12!70;UBERON:0002385!4.92e-11!63;UBERON:0001015!4.92e-11!63;UBERON:0000383!4.92e-11!63;UBERON:0001134!7.78e-11!61;UBERON:0002036!7.78e-11!61;UBERON:0003082!7.78e-11!61;UBERON:0004872!4.06e-10!84;UBERON:0002049!7.54e-10!79;UBERON:0007798!7.54e-10!79;UBERON:0000468!1.06e-09!659;UBERON:0001981!1.35e-09!60;UBERON:0007500!1.35e-09!60;UBERON:0004537!1.35e-09!60;UBERON:0006965!1.35e-09!60;UBERON:0001637!1.78e-09!42;UBERON:0003509!1.78e-09!42;UBERON:0004572!1.78e-09!42;UBERON:0000055!2.91e-09!69;UBERON:0005256!1.57e-08!143;UBERON:0004573!4.12e-08!33;UBERON:0004571!4.12e-08!33;UBERON:0000467!1.06e-07!625;UBERON:0001009!1.13e-07!113;UBERON:0000480!1.19e-07!626;UBERON:0004535!3.14e-07!110;UBERON:0000490!3.64e-07!138;UBERON:0002100!3.83e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;7.69e-09;33!UBERON:0004571;7.69e-09;33!UBERON:0001637;4.74e-08;42!UBERON:0003509;4.74e-08;42!UBERON:0004572;4.74e-08;42!UBERON:0002385;1.69e-07;31!UBERON:0001015;1.69e-07;31!UBERON:0000383;1.69e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,3.58e-13,73;UBERON:0002329,5.41e-13,71;UBERON:0003059,5.41e-13,71;UBERON:0007282,5.41e-13,71;UBERON:0004290,5.41e-13,71;UBERON:0009618,5.41e-13,71;UBERON:0000486,1.16e-12,83;UBERON:0003077,1.43e-12,72;UBERON:0007285,1.43e-12,72;UBERON:0002385,1.21e-11,64;UBERON:0001015,1.21e-11,64;UBERON:0000383,1.21e-11,64;UBERON:0007503,1.68e-11,78;UBERON:0001134,1.73e-11,62;UBERON:0002036,1.73e-11,62;UBERON:0003082,1.73e-11,62;UBERON:0001637,4.07e-11,42;UBERON:0003509,4.07e-11,42;UBERON:0004572,4.07e-11,42;UBERON:0004872,6.42e-11,83;UBERON:0005256,2.09e-10,122;UBERON:0000926,3.38e-10,315;UBERON:0004120,3.38e-10,315;UBERON:0006603,3.38e-10,315;UBERON:0000055,3.83e-10,68;UBERON:0007500,5.43e-10,59;UBERON:0001981,5.43e-10,59;UBERON:0004537,5.43e-10,59;UBERON:0006965,5.43e-10,59;UBERON:0004573,8.01e-10,33;UBERON:0004571,8.01e-10,33;UBERON:0002049,1.01e-09,78;UBERON:0007798,1.01e-09,78;UBERON:0001009,2.42e-08,112;UBERON:0000490,2.75e-08,148;UBERON:0004535,5.40e-08,109;UBERON:0003104,3.26e-07,160;UBERON:0009142,3.26e-07,160;UBERON:0004923,6.70e-07,66 | |||
|phase1_expression=3.45188920614058,7.92171938396638,3.94672331468719,4.00293193412522,4.46961094427288,6.97870819280295,0,1.26343974685366,0.522371256399677,0.491467873003018,0,0.436882744260345,1.05506791291381,0.990130823680373,2.65117900582333,10.7572023432284,6.62963980826375,5.84248072309899,4.39139518911456,0.246242116153576,0.204000691244253,0.313454721478088,0.286235987131057,2.05311637609326,1.12988375635323,0.764134057479513,0.410502947249729,0.472264687882075,0,0,0.154816123316076,0,0.6024118375565,1.84877005083394,0.542270404062111,0.568676929949686,0.293600439334847,0,0.601633342410425,0,0.223915474239924,0.647787332037959,0.257575567634187,0,0,0,0.929716147622738,0.411167888021826,0.309706370895104,0.28769239232215,0.512321413058201,0.945928919554341,1.37898272294647,0.645484683583826,1.35426486594342,0.376484679085209,0.272906150057846,0.224723484445085,1.22433556948361,0.962787081228281,0,0,0.199463657621632,0,3.77272010217159,0.56738522469114,1.24564449799115,1.50749199154046,0,0.217188844705117,3.02699751316684,2.20966581592539,3.16462387440884,0.422510572623884,0,0,0.22465726229299,0,0.32145117339416,0,0,0,0,2.18455444504853,0,0,0.800791974072025,0,0,0,0,0.587237189370939,0.382273228125229,0,0.560508562981536,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01210257911091,0.767175371061182,6.14446559053763,1.50401373190767,3.76600949298142,0.795285947051099,0.973269740605272,0.567208902984407,1.55210578223795,0.966182642624386,0.458426764241994,0,0.370784442784429,0,1.56716763569341,1.06366368415092,0,0,0.74291500265913,1.19257444420023,0,1.04142150482278,0,0.419499436209906,1.92582629358047,1.8809546988313,2.58416759169329,1.06729878806013,1.00416183829401,2.01414658554573,0.760272105718513,1.46437234528902,1.83831540172934,0.81014194788176,2.23249320710199,0.673588117878509,1.23872628531654,0,0,0.549605231791222,0,0,0,6.95760732373446,3.29239330327907,1.58891016975863,2.86836620748814,4.25602058638028,5.04609840128076,2.1349799145941,0.98667019366864,0,2.55950276932407,1.79808093424805,1.21085942115945,1.72852777344,0.70296429550139,1.87296046098192,1.71141546463335,1.49448680551801,1.996386476944,1.94247533241758,0.702254033511242,1.63323337003915,2.21101771161182,1.34323515528495,3.56400857184616,3.95627086845691,0,0,1.0100166837244,2.00189631795143,0.554128230968366,0.877955241761676,7.04921930337745,1.65261864797256,1.70148274740032,2.69084453533293,2.13557388818567,1.48352330811693,1.50045548042201,1.8549455262919,1.28820270022815,1.67505170698431,0.675105328965065,3.11798416515836,3.02920529092937,1.56484827691909,2.10139873864455,1.77504796258307,3.02256294682921,1.3564847384839,1.54608682530637,1.09098448236334,0.573609190778008,0.487894824518382,0.662648841607426,0.464775771478074,0.207322110030741,1.7662459561294,0.72995471815166,0,3.21620469096443,1.38134921352481,0.928735856063958,6.49691533502627,0.709840800239063,0.842923450390509,0.482022059766964,1.10293972732394,0.217879444092406,0.237270619111097,0.134831308160164,0.392442930250692,0.769494313892781,1.4763109092493,0,0,0,1.26755034821831,0,0.590789906681404,0,0.614942192715568,0.857839051492628,1.09750285408626,0,0.301586917234893,0.648119116109707,0,0,1.44331342025273,0.34779121492523,0.469634776943287,1.01056513432752,1.85194205030644,1.71228737011138,0,0,0.738651018262192,0.702012795417713,0.743155811443641,0,0.503946384596579,0.425325291727159,1.25381931783988,0.581267877027924,1.15014803749563,0.985326475791887,0.088048434013226,0,0.432359860250884,0.37872730027914,0.253991577168676,0.763976851116555,0,0,0.616964956219941,0,1.14330573052231,0,0.43596006883328,2.0534720029866,1.29271715757778,0,0,1.32969058292435,4.16029747645464,0,0,0.266422179016099,2.00169191121407,0,0,0.325736184293735,1.06617584622764,0.791951872933429,2.71295439353627,1.74306691720059,4.79870357673874,0,0.502257091432126,2.10833939483032,1.19812427745791,0,0,4.63300181336253,7.80810025691457,2.32779252211864,0,0.197030760201927,0,0,0,0,0,0.502548796003046,1.91381625495949,0,0,0.414415513436035,1.59498939234882,2.00068208423871,1.08506009479894,3.74347550755453,16.0586089917446,4.57337003598411,3.27995961979597,1.80567659836631,6.82222512167955,0,1.32845119707087,1.47495334833363,2.17209036170207,0.195801157462741,1.37257369524342,0,0.431428401637234,0,0.303127571446259,0,0,4.46594054073798,1.2276957863045,4.2099014164961,3.45975702990393,3.07024349440022,5.30817939773905,1.48418066444991,2.62156479464514,1.59805552781814,1.06765302817952,0,2.32420756919918,0.362578348774867,2.6065841139427,2.3941057123333,2.29628896329214,3.09554985611419,2.36023946926963,0,0.770153371044148,0,0,0.844413031143006,0,1.70093705276516,1.29549549661284,0,0,0,0.254876273045038,0,0.447749509444357,0.657779629937804,0.261435451024901,0.256450125116389,0.984043937099117,0.650756789328606,0.9273691048295,1.09883357782012,0.577566499444116,0.574265537996172,1.30012049207304,4.82051789532479,1.25671933779759,2.92692372517824,1.84204409671355,1.7918754422989,1.50388342815583,1.16013355131383,0.681813019328807,1.33548053470106,0.495854746082934,1.34533047155574,0.255225424989168,1.6185244936888,8.83206543664843,1.25924938732256,2.7881490806424,0.616067160352178,2.66153015158511,0,2.7798632865588,2.43312307461385,0.744316738719335,1.2655176988749,2.85945290885737,0.255897791311334,2.56763392820352,1.27281299170375,3.13979456079692,1.43897966066652,2.47083326762449,1.06031162111118,0.606547444719948,3.17020642346017,1.26377536871694,0,5.60541026151954,6.33900880540533,1.09199929126389,2.2624869112594,4.52032466480971,0.551365343546124,2.65375590096488,6.13831239355268,1.15755106853338,1.31178950409327,0.608731130888112,1.54911749049875,1.97186921772569,0.860468113224309,0.982490410131212,1.07001315444375,2.83808851256478,3.37772216476263,3.95153871551882,0,0.699869440489966,0.384888450902048,0,0,1.03558180854457,0,1.68471475667626,0.443430153536676,0.459446800413919,0,0.764637207142375,0.569647187174163,0,0,0,0.540031437238115,0,0.213648142254946,0.962479855263359,0.245040215981032,0.929015875628594,0,0.213425530045242,0.159426272728822,0.199579371432817,0.383010740264733,0.846694330895531,0,0.280797178113459,0,0.156679895773023,0,0.338583555603207,0,0.605399121573143,0.425846237690326,0.687010689511529,0.614481528616916,0.223676107892416,0.166849141711909,0,0,0,0,0,0,0,3.22317994398167,0,0.780103689942349,0.284136146806413,2.62618933211459,0.593929361665277,1.22864280839693,0,0.422008249231538,1.8922479853894,0,0,2.78947183551498,0,0,0.511343412510774,0.492339221844278,5.59871257791253,0.539210106883961,0,1.02314474045374,4.14302303675121,0,1.11136990144637,0,0.185536196323703,0,1.04171104434093,0,2.17499872630438,0.1137934482855,0,0,0.689486746482929,1.16641845353302,0.868124974666461,0,0.482385754501632,0,0.110579259931225,1.18219047581419,0.658156191461918,0.653630781113941,0.278847488557207,2.38545801361771,0.91153644677601,0.46112780877612,0.538545866458633,1.3037684630641,6.06102203490647,2.74792780205587,13.8589041764845,0,0.31396051279005,0.332423363800313,0,0.19606253431774,0,0,0,1.47698645169619,1.14262965711403,0.141353071433941,0.649165919226273,0.995261931078505,0.530745387020035,1.22206028986725,0,0.247127877893006,0.104421949505455,0.539209063845416,0.802577647298789,0.468528891450678,2.55436704901932,0,0.728341138602278,2.76209081994573,1.20990716048664,0.30607276163049,0.126373159256976,0.901940516486955,0.311064574191741,0,1.65495977937749,0,0,0.284609546029793,1.94144542218394,0.867798691675654,0.0979923974143777,0.34823682632161,2.97035336011451,0.343972064943233,0.774050650312681,0.584714536689484,0.903270027585302,1.45483524732629,0,0.90392296312213,1.09633539717401,0.19871461170299,0.316553979779393,0.977756913674015,0.0801588202515337,1.28071796843612,2.39771531498556,0.576361668616424,0.916292769327325,0.857974989309823,1.00838358591705,0.49701014226173,0.235694034616795,0.271808412147228,0.523014231561666,1.12198039399954,0.577901179803038,0,1.09524303113594,0,1.71906176567983,0,1.39641200636127,1.3749625440701,2.15361907373044,1.39775300349294,4.29226048136571,0.669514372325618,1.34366944973453,3.24269895188163,1.16495949527454,0.157566364614447,0.659326867049332,0.337017719270924,0.492137407573744,0.169346664131569,0,0.681017030557878,1.12527203925513,1.10031549277787,9.97056811270044,0.674921674654501,0,0.121499113316049,0.335434687599266,0.86686278029118,0.367182116944987,0.105600336519406,0.717149357331379,0.575745591958336,1.42939065274673,1.98627591109629,0.25426853765475,3.25799761052228,5.18532894720761,6.85833456229759,0,0.246277562248017,0.681552087141687,1.01980882368113,0.58620893471233,0,0.258565912723101,0.92562821219883,0,0,1.60181118851542,0.78602152549833,2.07119527673598,0,0.395223263795889,0.730755590285376,0,0.544017803369474,1.0027595760908,0,0.655745261419609,0.157054096250234,0,2.56255156294123,0.876336514945499,1.14681839138014,0.665574309221114,0.124192805882767,0.830091809617385,0.124980407962107,1.36484205787483,1.99825733481477,8.46956950913418,0.468334905806882,0.579684114443301,1.19403842309499,3.03827302801392,2.77402930751307,3.97746311077687,3.27038272278348,0.889811221596536,2.51724075236616,4.08323494160745,1.39893480524502,1.03498604992744,2.23015474029183,0.449803112163605,2.48420731002015,2.07353103920428,5.58267600571789,4.17396049449387,1.95334891696384,14.0897928502454,5.69619026486526,1.63663793282303,2.57785336901972,1.85613503951397,5.57334244178062,14.0009717632104,1.37358282073117,1.34699795506368,0,0.192619830407303,1.50109113962448,0,1.36023555307363,0.694567422971502,1.46842022703881,1.25362188757041,0.926404341482917,1.53498834705095,3.18040462702586,5.59450710985653,1.35153952522458,0,0.345430341731199,2.12701969324168,0.414775308455192,0.389720617678777,0.797189041880179,0.163565394255844,6.55219697692825,1.47463745252232,0.211312123358627,0,0.213383459388282,0.688859918643263,0.567515953566836,0.184105950251841,0.279759015438889,0.622077260032973,0.127894371303652,0,0.314531883711793,0.327628914576042,0.678930119816101,0.850299680406731,0.867550349813015,0,2.86203915588077,0.315446980005013,0,6.70084293012299,1.531227386766,0.128458450192919,0,0.319267718114302,1.23069818544453,0.252071696221718,0.138314504928436,0.484426936895553,1.42769420259154,0.294443155503077,0.235939446695481,2.20114318226015,0.462102664601353,3.4324388592045,0,0.397832444232549,1.0529445968896,1.0085253435176,1.56302802246618,0.523813388962845,3.60298218522213,0.295712172434091,0.405225507710368,0,0.413373593002368,0.19024743058172,0,0,6.45074531906083,0.351742488719241,0.383287282918786,1.07140367175657,0,0,0,1.1531308121143,0.345701962667338,1.54339208493677,0.40781839786099,0.263091094251396,0.590969204419841,0.333694205676207,1.17739639275771,0.314231179832004,0.280272163313789,0.913158720509496,1.72742072974897,0,0.428859265059938,0.94808167039636,0.581207126840626,0,0,0.828864656652147,0.6828739083758,0,0,1.30165200803622,0.766920642832419,1.69354820076372,0.68732060563215,0.62041277132864,0,0.111855431797792,0,0.243835849964539,0.647428837187895,1.02662806856247,2.3196288626764,0.485710993059139,0.935757853848423,0.397901550322736,0.713520544665411,0.22589216407792,0.439762066981716,0.452888530700021,0.385870790539723,0.437119121007915,0.470317296361523,5.63841140033983,0.235676547101626,3.53355240806901,0.297046400327086,0.8453114551668,3.0586880643807,0.939839179798536,0.128915775947154,0.0999411559249289,0.178553938605658,0,0,0,0.458729283404541,0.860037498908708,0.631086248772738,0.339957450954573,0,1.5870805215462,7.43990036333503,3.69740502905135,10.8156640530947,0.378499274505237,0.437062287854782,0.126698501011437,0.61193297845189,0.26721740526556,0.827054095813604,3.25919801080088,2.04602485189246,0.803892390468535,1.65833887891756,0.724030971033267,0.213233981900981,0.952257725854961,0.516711278688049,0.31037357147929,1.56984607612859,0.445530107947154,0.202117188958219,0.217716747896961,2.39563310759697,0.134704106029175,0.286888821570705,0.99798106963804,0.407016343054873,2.02781957167659,0,0.269475606319761,0,0.855690109280065,2.44137706989443,0.665756774185513,1.61019034872821,0 | |||
|short_description=p@chr1:25140597..25140631,+ | |||
}} |
Latest revision as of 06:20, 28 July 2015
Short description: | p@chr1:25140597..25140631, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:25140597..25140631, + |
Coexpression cluster: | C1068_mesenchymal_chorionic_Adipocyte_tenocyte_Olfactory_mixed_Smooth |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.93e-14 | 76 |
muscle precursor cell | 7.00e-12 | 58 |
myoblast | 7.00e-12 | 58 |
multi-potent skeletal muscle stem cell | 7.00e-12 | 58 |
mesodermal cell | 8.96e-12 | 121 |
electrically responsive cell | 1.25e-10 | 61 |
electrically active cell | 1.25e-10 | 61 |
muscle cell | 2.85e-10 | 55 |
smooth muscle cell | 8.23e-10 | 43 |
smooth muscle myoblast | 8.23e-10 | 43 |
multi fate stem cell | 3.20e-09 | 427 |
somatic stem cell | 1.06e-08 | 433 |
vascular associated smooth muscle cell | 2.79e-08 | 32 |
stem cell | 4.68e-08 | 441 |