FFCP PHASE1:Hg19::chr1:17559934..17559937,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr1:17559934..17559937,+ | |||
|coexpression_cluster_id=C3202 | |||
|description=CAGE_peak_at_chr1:17559934..17559937,+ | |||
|id=chr1:17559934..17559937,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.36e-27!254;CL:0002076!1.17e-23!43;CL:0002368!1.22e-23!13;CL:0000223!2.38e-17!59;CL:0002202!7.07e-15!9;CL:0002632!7.07e-15!9;CL:0000068!1.81e-09!3;CL:0000069!1.81e-09!3;CL:0000307!1.81e-09!3;CL:0000377!1.81e-09!3;CL:0000076!1.84e-09!62;CL:0002328!2.02e-09!3;CL:0002159!4.50e-09!13;CL:0000239!1.45e-08!3;CL:1000615!1.45e-08!3;CL:0002306!1.45e-08!3;CL:0000362!2.20e-08!8;CL:0002251!5.19e-08!21;CL:0000240!1.86e-07!6;CL:0000311!1.86e-07!6;CL:0000079!1.86e-07!6;CL:0000237!1.86e-07!6;CL:0000036!1.86e-07!6;CL:0000357!1.86e-07!6;CL:0000114!1.86e-07!6;CL:0000063!3.83e-07!578;CL:0002327!3.90e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0002368;1.38e-20;13!CL:0002202;2.57e-19;9!CL:0002632;2.57e-19;9!CL:0000307;1.63e-15;3!CL:0002328;4.59e-15;3!CL:0002327;1.19e-11;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,1.33e-20,13;CL:0002202,2.52e-19,9;CL:0002632,2.52e-19,9;CL:0000068,1.69e-15,3;CL:0000069,1.69e-15,3;CL:0000307,1.69e-15,3;CL:0000377,1.69e-15,3;CL:0002328,4.28e-15,3;CL:0002327,1.19e-11,4;CL:0000066,4.72e-11,253;CL:0002076,9.73e-09,42;CL:0000076,2.03e-07,63 | |||
|ontology_enrichment_development_v019=CL:0000377;1.63e-15;3 | |||
|ontology_enrichment_disease=DOID:1749!4.08e-21!14;DOID:305!1.11e-10!106;DOID:0050687!5.85e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.48e-18;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.68e-18,14 | |||
|ontology_enrichment_uberon=UBERON:0003729!1.10e-12!5;UBERON:0003343!3.32e-10!4;UBERON:0004785!3.32e-10!4;UBERON:0004815!2.02e-09!3;UBERON:0002031!2.02e-09!3;UBERON:0000344!2.60e-09!12;UBERON:0007196!4.09e-09!14;UBERON:0001558!4.09e-09!14;UBERON:0004119!1.32e-08!169;UBERON:0000925!1.32e-08!169;UBERON:0006595!1.32e-08!169;UBERON:0006853!1.45e-08!3;UBERON:0007685!1.45e-08!3;UBERON:0004134!1.45e-08!3;UBERON:0001004!2.76e-08!72;UBERON:0000065!9.04e-08!53;UBERON:0001911!3.90e-07!4;UBERON:0002185!3.90e-07!4;UBERON:0005333!3.90e-07!4;UBERON:0008425!3.90e-07!4;UBERON:0005311!3.90e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;4.59e-15;3!UBERON:0002031;4.59e-15;3!UBERON:0004913;1.01e-11;1!UBERON:0003703;1.01e-11;1!UBERON:0001174;1.01e-11;1!UBERON:0004914;1.01e-11;1!UBERON:0007196;1.09e-11;15!UBERON:0001558;1.09e-11;15!UBERON:0001911;1.19e-11;4!UBERON:0002185;2.08e-09;5!UBERON:0000065;1.68e-08;44!UBERON:0005178;6.48e-08;34!UBERON:0002224;6.48e-08;34!UBERON:0003126;3.78e-07;7!UBERON:0001005;3.78e-07;7!UBERON:0000485;5.84e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,4.28e-15,3;UBERON:0002031,4.28e-15,3;UBERON:0004913,1.07e-11,1;UBERON:0003703,1.07e-11,1;UBERON:0001174,1.07e-11,1;UBERON:0004914,1.07e-11,1;UBERON:0007196,1.07e-11,15;UBERON:0001558,1.07e-11,15;UBERON:0001911,1.19e-11,4;UBERON:0005333,1.19e-11,4;UBERON:0008425,1.19e-11,4;UBERON:0005311,1.19e-11,4;UBERON:0002185,2.00e-09,5;UBERON:0000065,6.01e-09,54;UBERON:0005178,9.93e-08,34;UBERON:0002224,9.93e-08,34;UBERON:0000072,1.08e-07,47;UBERON:0005181,1.67e-07,35;UBERON:0003126,3.84e-07,7;UBERON:0001005,3.84e-07,7;UBERON:0005153,4.88e-07,37;UBERON:0008947,6.73e-07,38;UBERON:0003258,6.73e-07,38 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,1.39560233594486,0.218441372130172,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,1.204823675113,3.69754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.312160076830321,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.548751427043128,1.1240175325762,0.301586917234893,0.925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0.141775097242386,2.23896306757121,2.61570544662566,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606255142892519,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0.501689773854853,0.509752546090077,0.831076008928724,0.223874754722178,0,0,0,0,0,0,0,0,0.574265537996172,1.30012049207304,0,0,0,0,0,0,0,0,0,0.330569830721956,0.192190067365106,4.8492830747942,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.577332676353072,4.69211592875051,8.71127878890581,0,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179736702294654,0,0,0,0,0,0,0,0,0,0,0,0.455173793141999,0.508507300585533,1.18193840883968,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,1.47698645169619,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782658475728359,0,0,0,0,0,1.05226393590145,0,0,0,0,0,0,0,0,0.587954384486266,1.04471047896483,0,0,0,0,0,0,0,0,0,0.19871461170299,0,0,0.0801588202515337,0,0.19980960958213,0,0,0,0.432164393964449,0,0,0.135904206073614,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.91502377331055,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.512483037175893,0,0,0,0.194860308839388,0,0,0,0,0,0,0,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0.11796972334774,0.366857197043358,1.03973099535304,0,0,0,0,0,0,0,0,1.18284868973636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.472775363535873,0,0,0,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.68732060563215,0,0,0,0.098150233615243,0.487671699929078,0,0,0,0,0,0,0,0.11294608203896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2498775702396,3.17605384544123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.476128862927481,0,0,0,0,0,0,0,0.0673520530145875,0,0,0.407016343054873,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:17559934..17559937,+ | |||
}} |
Latest revision as of 00:41, 28 July 2015
Short description: | p@chr1:17559934..17559937, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:17559934..17559937, + |
Coexpression cluster: | C3202_Tracheal_Small_squamous_Bronchial_hairy_Mammary_Keratinocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 1.33e-20 | 13 |
epithelial cell of tracheobronchial tree | 2.52e-19 | 9 |
epithelial cell of lower respiratory tract | 2.52e-19 | 9 |
duct epithelial cell | 1.69e-15 | 3 |
branched duct epithelial cell | 1.69e-15 | 3 |
tracheal epithelial cell | 1.69e-15 | 3 |
tracheoblast | 1.69e-15 | 3 |
bronchial epithelial cell | 4.28e-15 | 3 |
mammary gland epithelial cell | 1.19e-11 | 4 |
epithelial cell | 4.72e-11 | 253 |
endo-epithelial cell | 9.73e-09 | 42 |
squamous epithelial cell | 2.03e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 4.28e-15 | 3 |
epithelium of bronchus | 4.28e-15 | 3 |
hepatopancreatic ampulla | 1.07e-11 | 1 |
extrahepatic bile duct | 1.07e-11 | 1 |
common bile duct | 1.07e-11 | 1 |
duodenal papilla | 1.07e-11 | 1 |
tracheobronchial tree | 1.07e-11 | 15 |
lower respiratory tract | 1.07e-11 | 15 |
mammary gland | 1.19e-11 | 4 |
mammary bud | 1.19e-11 | 4 |
mammary ridge | 1.19e-11 | 4 |
mammary placode | 1.19e-11 | 4 |
bronchus | 2.00e-09 | 5 |
respiratory tract | 6.01e-09 | 54 |
thoracic cavity element | 9.93e-08 | 34 |
thoracic cavity | 9.93e-08 | 34 |
segment of respiratory tract | 1.08e-07 | 47 |
thoracic segment organ | 1.67e-07 | 35 |
trachea | 3.84e-07 | 7 |
respiratory airway | 3.84e-07 | 7 |
epithelial bud | 4.88e-07 | 37 |
respiratory primordium | 6.73e-07 | 38 |
endoderm of foregut | 6.73e-07 | 38 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.68e-18 | 14 |