FFCP PHASE1:Hg19::chr1:173176462..173176477,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7292 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11934 | |||
|TSSclassifier=strong | |||
|UniProt=P23510 | |||
|association_with_transcript=0bp_to_NM_003326,uc001giw.2_5end | |||
|cluster_id=chr1:173176462..173176477,- | |||
|coexpression_cluster_id=C725 | |||
|description=CAGE_peak_1_at_TNFSF4_5end | |||
|id=chr1:173176462..173176477,- | |||
|ontology_enrichment_celltype=CL:0000048!2.59e-20!430;CL:0000222!5.07e-20!119;CL:0000034!9.29e-20!444;CL:0000723!1.96e-19!436;CL:0002139!1.76e-18!24;CL:0002371!1.34e-16!591;CL:0000144!3.40e-16!625;CL:0000071!2.26e-15!18;CL:0002546!2.26e-15!18;CL:0000115!8.25e-14!35;CL:0000680!2.31e-12!57;CL:0000056!2.31e-12!57;CL:0000355!2.31e-12!57;CL:0000183!6.13e-12!59;CL:0000192!7.85e-12!42;CL:0000514!7.85e-12!42;CL:0000359!8.82e-12!32;CL:0000187!1.43e-11!54;CL:0000055!1.85e-10!180;CL:0000012!5.46e-10!682;CL:0000393!1.93e-09!60;CL:0000211!1.93e-09!60;CL:0000548!3.88e-09!679;CL:0000004!3.88e-09!679;CL:0000255!3.88e-09!679;CL:0002078!4.48e-09!44;CL:0000213!4.88e-09!57;CL:0000215!4.88e-09!57;CL:1000413!1.20e-08!9;CL:0000134!3.34e-08!358;CL:0002620!1.21e-07!23;CL:0000003!1.99e-07!722;CL:0000057!2.36e-07!75;CL:0002320!2.71e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0002139;2.05e-29;24!CL:0000071;1.85e-24;18!CL:0000115;3.20e-18;36!CL:0000359;4.27e-15;32!CL:1000413;2.55e-13;9!CL:0002078;4.01e-10;45!CL:0000192;1.24e-09;43!CL:0002544;2.08e-09;6!CL:0002543;3.97e-09;6!CL:0000213;8.65e-09;58!CL:0000215;8.65e-09;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,1.34e-29,24;CL:0000071,1.96e-24,18;CL:0002546,1.96e-24,18;CL:0000222,1.21e-22,121;CL:0000115,1.32e-21,36;CL:0000359,3.95e-16,32;CL:0002078,1.94e-15,45;CL:0000213,4.93e-15,58;CL:0000215,4.93e-15,58;CL:1000413,2.71e-13,9;CL:0000048,5.37e-13,427;CL:0000192,1.74e-12,43;CL:0000514,1.74e-12,43;CL:0000034,1.84e-12,441;CL:0000723,2.19e-12,433;CL:0002544,2.14e-09,6;CL:0002543,3.90e-09,6;CL:0000680,4.43e-09,58;CL:0000056,4.43e-09,58;CL:0000355,4.43e-09,58;CL:0000187,4.73e-09,55;CL:0000393,1.81e-07,61;CL:0000211,1.81e-07,61;CL:0005020,7.53e-07,6;CL:0002138,7.53e-07,6;CL:0005022,7.53e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002546;1.85e-24;18!CL:0000514;1.24e-09;43!CL:0000222;7.85e-08;121 | |||
|ontology_enrichment_disease=DOID:2394!3.43e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.84e-11;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.47e-11,14 | |||
|ontology_enrichment_uberon=UBERON:0000055!1.53e-30!69;UBERON:0002049!9.09e-28!79;UBERON:0007798!9.09e-28!79;UBERON:0001981!1.23e-26!60;UBERON:0007500!1.23e-26!60;UBERON:0004537!1.23e-26!60;UBERON:0006965!1.23e-26!60;UBERON:0004872!3.13e-26!84;UBERON:0004535!7.43e-25!110;UBERON:0001009!2.68e-23!113;UBERON:0001637!2.83e-18!42;UBERON:0003509!2.83e-18!42;UBERON:0004572!2.83e-18!42;UBERON:0003081!2.10e-17!216;UBERON:0003914!1.02e-15!118;UBERON:0001986!2.26e-15!18;UBERON:0004638!2.26e-15!18;UBERON:0004852!2.26e-15!18;UBERON:0000490!8.71e-14!138;UBERON:0000487!1.15e-13!22;UBERON:0004573!5.62e-13!33;UBERON:0004571!5.62e-13!33;UBERON:0006914!7.16e-11!25;UBERON:0004290!1.00e-10!70;UBERON:0001134!1.61e-10!61;UBERON:0002036!1.61e-10!61;UBERON:0003082!1.61e-10!61;UBERON:0002385!3.17e-10!63;UBERON:0001015!3.17e-10!63;UBERON:0000383!3.17e-10!63;UBERON:0003915!1.20e-08!9;UBERON:0004700!1.20e-08!9;UBERON:0001917!1.20e-08!9;UBERON:0000947!2.18e-08!21;UBERON:0010191!2.18e-08!21;UBERON:0000486!2.19e-08!82;UBERON:0000914!4.89e-08!83;UBERON:0002329!4.89e-08!83;UBERON:0003077!4.89e-08!83;UBERON:0003059!4.89e-08!83;UBERON:0007282!4.89e-08!83;UBERON:0009618!4.89e-08!83;UBERON:0007285!4.89e-08!83;UBERON:0001638!1.86e-07!9;UBERON:0003920!1.86e-07!9;UBERON:0004582!1.86e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;1.85e-24;18!UBERON:0001986;1.85e-24;18!UBERON:0004852;1.85e-24;18!UBERON:0007500;1.77e-22;56!UBERON:0001981;1.77e-22;56!UBERON:0004537;1.77e-22;56!UBERON:0000055;1.83e-22;65!UBERON:0000487;1.10e-20;22!UBERON:0001637;7.87e-19;42!UBERON:0003509;7.87e-19;42!UBERON:0004572;7.87e-19;42!UBERON:0006914;2.19e-17;25!UBERON:0002049;5.82e-16;75!UBERON:0007798;5.82e-16;75!UBERON:0004573;2.72e-14;33!UBERON:0004571;2.72e-14;33!UBERON:0003914;6.78e-14;74!UBERON:0003915;2.55e-13;9!UBERON:0004700;2.55e-13;9!UBERON:0001917;2.55e-13;9!UBERON:0000490;7.12e-12;33!UBERON:0010260;2.81e-10;9!UBERON:0001638;1.01e-09;9!UBERON:0003920;1.01e-09;9!UBERON:0004582;1.01e-09;9!UBERON:0004535;1.74e-09;109!UBERON:0000947;3.98e-09;21!UBERON:0010191;3.98e-09;21!UBERON:0001009;5.74e-09;112!UBERON:0001473;7.35e-09;8!UBERON:0004536;7.35e-09;8!UBERON:0006558;7.35e-09;8!UBERON:0002465;1.52e-08;10!UBERON:0003513;7.66e-08;7!UBERON:0002066;2.74e-07;5!UBERON:0000025;3.02e-07;93 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000055,1.51e-41,68;UBERON:0002049,6.89e-37,78;UBERON:0007798,6.89e-37,78;UBERON:0007500,8.71e-35,59;UBERON:0001981,8.71e-35,59;UBERON:0004537,8.71e-35,59;UBERON:0006965,8.71e-35,59;UBERON:0004535,7.07e-31,109;UBERON:0001009,1.72e-29,112;UBERON:0004872,1.05e-27,83;UBERON:0004638,1.96e-24,18;UBERON:0001986,1.96e-24,18;UBERON:0004852,1.96e-24,18;UBERON:0001637,6.18e-24,42;UBERON:0003509,6.18e-24,42;UBERON:0004572,6.18e-24,42;UBERON:0000487,9.95e-21,22;UBERON:0003914,1.81e-17,117;UBERON:0006914,2.02e-17,25;UBERON:0003081,4.37e-16,203;UBERON:0004573,1.30e-15,33;UBERON:0004571,1.30e-15,33;UBERON:0000926,1.58e-13,315;UBERON:0004120,1.58e-13,315;UBERON:0006603,1.58e-13,315;UBERON:0003915,2.71e-13,9;UBERON:0004700,2.71e-13,9;UBERON:0001917,2.71e-13,9;UBERON:0000490,3.97e-13,148;UBERON:0010260,1.23e-10,9;UBERON:0001638,9.24e-10,9;UBERON:0003920,9.24e-10,9;UBERON:0004582,9.24e-10,9;UBERON:0000947,4.00e-09,21;UBERON:0010191,4.00e-09,21;UBERON:0001473,4.56e-09,8;UBERON:0004536,4.56e-09,8;UBERON:0006558,4.56e-09,8;UBERON:0002465,9.93e-09,10;UBERON:0001134,5.10e-08,62;UBERON:0002036,5.10e-08,62;UBERON:0003082,5.10e-08,62;UBERON:0007503,5.13e-08,78;UBERON:0003513,1.44e-07,7;UBERON:0002385,1.52e-07,64;UBERON:0001015,1.52e-07,64;UBERON:0000383,1.52e-07,64;UBERON:0002329,1.92e-07,71;UBERON:0003059,1.92e-07,71;UBERON:0007282,1.92e-07,71;UBERON:0004290,1.92e-07,71;UBERON:0009618,1.92e-07,71;UBERON:0002066,2.46e-07,5;UBERON:0003077,3.10e-07,72;UBERON:0007285,3.10e-07,72;UBERON:0007524,4.91e-07,73 | |||
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| |||
|short_description=p1@TNFSF4 | |||
}} |
Latest revision as of 17:27, 18 September 2015
Short description: | p1@TNFSF4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TNFSF4_5end |
Coexpression cluster: | C725_Mast_cord_mycosis_mesenchymal_Endothelial_hepatic_Mesenchymal |
Association with transcript: | 0bp_to_NM_003326, uc001giw.2_5end |
EntrezGene: | TNFSF4 |
HGNC: | 11934 |
UniProt: | P23510 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 1.34e-29 | 24 |
blood vessel endothelial cell | 1.96e-24 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.96e-24 | 18 |
mesodermal cell | 1.21e-22 | 121 |
endothelial cell | 1.32e-21 | 36 |
vascular associated smooth muscle cell | 3.95e-16 | 32 |
meso-epithelial cell | 1.94e-15 | 45 |
lining cell | 4.93e-15 | 58 |
barrier cell | 4.93e-15 | 58 |
endothelial cell of artery | 2.71e-13 | 9 |
multi fate stem cell | 5.37e-13 | 427 |
smooth muscle cell | 1.74e-12 | 43 |
smooth muscle myoblast | 1.74e-12 | 43 |
stem cell | 1.84e-12 | 441 |
somatic stem cell | 2.19e-12 | 433 |
aortic endothelial cell | 2.14e-09 | 6 |
vein endothelial cell | 3.90e-09 | 6 |
muscle precursor cell | 4.43e-09 | 58 |
myoblast | 4.43e-09 | 58 |
multi-potent skeletal muscle stem cell | 4.43e-09 | 58 |
muscle cell | 4.73e-09 | 55 |
electrically responsive cell | 1.81e-07 | 61 |
electrically active cell | 1.81e-07 | 61 |
lymphangioblast | 7.53e-07 | 6 |
endothelial cell of lymphatic vessel | 7.53e-07 | 6 |
vascular lymphangioblast | 7.53e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.47e-11 | 14 |