FFCP PHASE1:Hg19::chr1:156084564..156084580,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4000 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6636 | |||
|TSSclassifier=strong | |||
|UniProt=Q3BDU5 | |||
|association_with_transcript=-11bp_to_ENST00000392355_5end | |||
|cluster_id=chr1:156084564..156084580,+ | |||
|coexpression_cluster_id=C1839 | |||
|description=CAGE_peak_2_at_LMNA_5end | |||
|id=chr1:156084564..156084580,+ | |||
|ontology_enrichment_celltype=CL:0000012!1.05e-34!682;CL:0000548!1.69e-34!679;CL:0000004!1.69e-34!679;CL:0000255!1.69e-34!679;CL:0000144!2.18e-33!625;CL:0002371!6.50e-33!591;CL:0000055!1.47e-29!180;CL:0000222!2.43e-21!119;CL:0000003!3.85e-18!722;CL:0000057!6.66e-18!75;CL:0000220!2.69e-17!246;CL:0002321!1.80e-16!248;CL:0000183!5.97e-16!59;CL:0000680!1.34e-15!57;CL:0000056!1.34e-15!57;CL:0000355!1.34e-15!57;CL:0000187!9.08e-15!54;CL:0000063!1.84e-14!578;CL:0000192!1.54e-13!42;CL:0000514!1.54e-13!42;CL:0000723!1.00e-11!436;CL:0000048!1.69e-11!430;CL:0000393!2.44e-11!60;CL:0000211!2.44e-11!60;CL:0000359!2.66e-11!32;CL:0000034!1.50e-10!444;CL:0002620!3.54e-09!23;CL:0000213!9.23e-07!57;CL:0000215!9.23e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0000359;8.72e-11;32!CL:0000192;1.48e-10;43!CL:0002620;3.36e-09;23!CL:0000187;7.06e-09;55!CL:0000057;2.78e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,4.30e-22,121;CL:0000057,1.11e-17,76;CL:0002321,3.25e-17,250;CL:0000680,5.02e-16,58;CL:0000056,5.02e-16,58;CL:0000355,5.02e-16,58;CL:0000187,3.43e-15,55;CL:0000192,5.82e-14,43;CL:0000514,5.82e-14,43;CL:0000723,2.70e-12,433;CL:0000048,4.89e-12,427;CL:0000393,1.01e-11,61;CL:0000211,1.01e-11,61;CL:0000359,2.55e-11,32;CL:0000034,4.43e-11,441;CL:0002620,3.42e-09,23;CL:0000213,5.10e-07,58;CL:0000215,5.10e-07,58 | |||
|ontology_enrichment_development_v019=CL:0000514;1.48e-10;43!CL:0000355;4.69e-09;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!9.75e-20!83;UBERON:0002329!9.75e-20!83;UBERON:0003077!9.75e-20!83;UBERON:0003059!9.75e-20!83;UBERON:0007282!9.75e-20!83;UBERON:0009618!9.75e-20!83;UBERON:0007285!9.75e-20!83;UBERON:0000486!4.81e-19!82;UBERON:0000926!5.80e-19!448;UBERON:0004120!5.80e-19!448;UBERON:0006603!5.80e-19!448;UBERON:0004290!4.48e-18!70;UBERON:0001637!4.87e-16!42;UBERON:0003509!4.87e-16!42;UBERON:0004572!4.87e-16!42;UBERON:0002204!5.46e-15!167;UBERON:0001981!2.70e-14!60;UBERON:0007500!2.70e-14!60;UBERON:0004537!2.70e-14!60;UBERON:0006965!2.70e-14!60;UBERON:0001134!2.97e-14!61;UBERON:0002036!2.97e-14!61;UBERON:0003082!2.97e-14!61;UBERON:0005256!3.20e-14!143;UBERON:0002049!7.61e-14!79;UBERON:0007798!7.61e-14!79;UBERON:0004872!1.36e-13!84;UBERON:0000055!1.57e-13!69;UBERON:0002385!1.72e-13!63;UBERON:0001015!1.72e-13!63;UBERON:0000383!1.72e-13!63;UBERON:0004573!1.96e-12!33;UBERON:0004571!1.96e-12!33;UBERON:0003914!6.61e-12!118;UBERON:0003102!8.77e-12!95;UBERON:0003081!3.76e-11!216;UBERON:0002100!4.56e-11!216;UBERON:0002199!1.07e-10!45;UBERON:0002416!1.07e-10!45;UBERON:0003104!2.62e-10!238;UBERON:0009142!2.62e-10!238;UBERON:0000468!1.09e-09!659;UBERON:0000490!1.91e-09!138;UBERON:0002097!2.45e-09!40;UBERON:0000467!2.45e-09!625;UBERON:0000480!4.02e-09!626;UBERON:0004535!2.99e-08!110;UBERON:0001009!8.48e-08!113;UBERON:0000947!2.32e-07!21;UBERON:0010191!2.32e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;1.27e-11;42!UBERON:0003509;1.27e-11;42!UBERON:0004572;1.27e-11;42!UBERON:0004573;3.38e-11;33!UBERON:0004571;3.38e-11;33!UBERON:0007500;1.90e-09;56!UBERON:0001981;1.90e-09;56!UBERON:0004537;1.90e-09;56!UBERON:0003102;2.38e-08;50!UBERON:0002097;6.76e-08;41!UBERON:0002199;9.15e-08;46!UBERON:0002416;9.15e-08;46!UBERON:0003914;2.23e-07;74!UBERON:0000947;2.44e-07;21!UBERON:0010191;2.44e-07;21!UBERON:0000055;3.00e-07;65 | |||
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| |||
|short_description=p2@LMNA | |||
}} |
Latest revision as of 14:59, 17 September 2015
Short description: | p2@LMNA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LMNA_5end |
Coexpression cluster: | C1839_Mast_immature_Fibroblast_Mesenchymal_Hair_tenocyte_Keratocytes |
Association with transcript: | -11bp_to_ENST00000392355_5end |
EntrezGene: | LMNA |
HGNC: | 6636 |
UniProt: | Q3BDU5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 4.30e-22 | 121 |
fibroblast | 1.11e-17 | 76 |
embryonic cell | 3.25e-17 | 250 |
muscle precursor cell | 5.02e-16 | 58 |
myoblast | 5.02e-16 | 58 |
multi-potent skeletal muscle stem cell | 5.02e-16 | 58 |
muscle cell | 3.43e-15 | 55 |
smooth muscle cell | 5.82e-14 | 43 |
smooth muscle myoblast | 5.82e-14 | 43 |
somatic stem cell | 2.70e-12 | 433 |
multi fate stem cell | 4.89e-12 | 427 |
electrically responsive cell | 1.01e-11 | 61 |
electrically active cell | 1.01e-11 | 61 |
vascular associated smooth muscle cell | 2.55e-11 | 32 |
stem cell | 4.43e-11 | 441 |
skin fibroblast | 3.42e-09 | 23 |
lining cell | 5.10e-07 | 58 |
barrier cell | 5.10e-07 | 58 |