FFCP PHASE1:Hg19::chr1:154943181..154943192,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6464 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10840 | |||
|TSSclassifier=strong | |||
|UniProt=P29353 | |||
|association_with_transcript=24bp_to_ENST00000368445_5end | |||
|cluster_id=chr1:154943181..154943192,- | |||
|coexpression_cluster_id=C2529 | |||
|description=CAGE_peak_4_at_SHC1_5end | |||
|id=chr1:154943181..154943192,- | |||
|ontology_enrichment_celltype=CL:0000220!8.02e-38!246;CL:0002321!1.54e-37!248;CL:0000055!3.29e-29!180;CL:0000222!1.64e-25!119;CL:0000680!2.82e-17!57;CL:0000056!2.82e-17!57;CL:0000355!2.82e-17!57;CL:0000183!3.26e-17!59;CL:0000187!5.96e-16!54;CL:0000144!6.99e-15!625;CL:0000192!5.42e-14!42;CL:0000514!5.42e-14!42;CL:0000393!5.58e-14!60;CL:0000211!5.58e-14!60;CL:0000548!7.55e-14!679;CL:0000004!7.55e-14!679;CL:0000255!7.55e-14!679;CL:0000012!3.65e-13!682;CL:0002371!5.55e-13!591;CL:0000057!1.53e-12!75;CL:0000066!3.60e-12!254;CL:0000359!3.52e-11!32;CL:0000213!1.47e-09!57;CL:0000215!1.47e-09!57;CL:0000221!2.49e-07!71;CL:0000076!3.25e-07!62 | |||
|ontology_enrichment_celltype_v019=CL:0000359;4.06e-11;32!CL:0000192;8.52e-11;43!CL:0000187;6.99e-10;55!CL:0000393;1.19e-07;61!CL:0000211;1.19e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,3.19e-38,250;CL:0000222,1.40e-27,121;CL:0000680,3.07e-18,58;CL:0000056,3.07e-18,58;CL:0000355,3.07e-18,58;CL:0000187,7.61e-17,55;CL:0000192,9.01e-15,43;CL:0000514,9.01e-15,43;CL:0000393,1.02e-14,61;CL:0000211,1.02e-14,61;CL:0000057,2.02e-13,76;CL:0000359,1.12e-11,32;CL:0000066,4.07e-11,253;CL:0000213,1.13e-10,58;CL:0000215,1.13e-10,58;CL:0000076,9.01e-08,63;CL:0000221,1.70e-07,72;CL:0002078,4.25e-07,45 | |||
|ontology_enrichment_development_v019=CL:0000514;8.52e-11;43!CL:0000355;4.14e-10;58!CL:0000222;4.97e-08;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000486!3.53e-22!82;UBERON:0005256!4.36e-22!143;UBERON:0000475!5.05e-22!365;UBERON:0002100!1.29e-20!216;UBERON:0000914!6.16e-20!83;UBERON:0002329!6.16e-20!83;UBERON:0003077!6.16e-20!83;UBERON:0003059!6.16e-20!83;UBERON:0007282!6.16e-20!83;UBERON:0009618!6.16e-20!83;UBERON:0007285!6.16e-20!83;UBERON:0000119!9.81e-20!312;UBERON:0000483!1.73e-19!309;UBERON:0002049!3.75e-18!79;UBERON:0007798!3.75e-18!79;UBERON:0004290!1.02e-17!70;UBERON:0000490!5.66e-17!138;UBERON:0003104!6.52e-17!238;UBERON:0009142!6.52e-17!238;UBERON:0000481!1.05e-16!347;UBERON:0003914!2.86e-16!118;UBERON:0001134!9.30e-16!61;UBERON:0002036!9.30e-16!61;UBERON:0003082!9.30e-16!61;UBERON:0004872!2.07e-15!84;UBERON:0000055!3.39e-15!69;UBERON:0002385!8.79e-15!63;UBERON:0001015!8.79e-15!63;UBERON:0000383!8.79e-15!63;UBERON:0000468!5.81e-14!659;UBERON:0001981!8.82e-14!60;UBERON:0007500!8.82e-14!60;UBERON:0004537!8.82e-14!60;UBERON:0006965!8.82e-14!60;UBERON:0003102!3.70e-13!95;UBERON:0004535!8.02e-13!110;UBERON:0001637!1.67e-12!42;UBERON:0003509!1.67e-12!42;UBERON:0004572!1.67e-12!42;UBERON:0001009!5.42e-12!113;UBERON:0000467!1.30e-11!625;UBERON:0000480!1.32e-11!626;UBERON:0000477!3.66e-11!286;UBERON:0000922!3.59e-10!612;UBERON:0002050!4.40e-10!605;UBERON:0005423!4.40e-10!605;UBERON:0000923!4.43e-10!604;UBERON:0005291!4.43e-10!604;UBERON:0006598!4.43e-10!604;UBERON:0002532!4.43e-10!604;UBERON:0004573!5.57e-10!33;UBERON:0004571!5.57e-10!33;UBERON:0004111!1.52e-09!241;UBERON:0002199!9.65e-08!45;UBERON:0002416!9.65e-08!45;UBERON:0005085!1.31e-07!29 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;2.20e-09;42!UBERON:0003509;2.20e-09;42!UBERON:0004572;2.20e-09;42!UBERON:0004573;2.49e-09;33!UBERON:0004571;2.49e-09;33!UBERON:0002049;2.87e-08;75!UBERON:0007798;2.87e-08;75!UBERON:0007500;4.99e-08;56!UBERON:0001981;4.99e-08;56!UBERON:0004537;4.99e-08;56!UBERON:0003914;7.21e-08;74!UBERON:0010371;1.19e-07;31!UBERON:0000055;1.30e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000486,1.35e-22,83;UBERON:0007503,4.88e-21,78;UBERON:0003104,6.08e-20,160;UBERON:0009142,6.08e-20,160;UBERON:0005256,1.76e-19,122;UBERON:0000490,1.87e-19,148;UBERON:0002100,2.42e-18,199;UBERON:0002049,3.26e-18,78;UBERON:0007798,3.26e-18,78;UBERON:0002329,3.61e-18,71;UBERON:0003059,3.61e-18,71;UBERON:0007282,3.61e-18,71;UBERON:0004290,3.61e-18,71;UBERON:0009618,3.61e-18,71;UBERON:0007524,1.08e-17,73;UBERON:0003077,1.80e-17,72;UBERON:0007285,1.80e-17,72;UBERON:0003914,3.68e-16,117;UBERON:0001134,4.18e-16,62;UBERON:0002036,4.18e-16,62;UBERON:0003082,4.18e-16,62;UBERON:0000119,7.75e-16,309;UBERON:0000483,1.32e-15,306;UBERON:0000055,3.95e-15,68;UBERON:0004872,9.28e-15,83;UBERON:0002385,9.68e-15,64;UBERON:0001015,9.68e-15,64;UBERON:0000383,9.68e-15,64;UBERON:0003102,1.05e-13,99;UBERON:0007500,1.22e-13,59;UBERON:0001981,1.22e-13,59;UBERON:0004537,1.22e-13,59;UBERON:0006965,1.22e-13,59;UBERON:0001637,4.53e-13,42;UBERON:0003509,4.53e-13,42;UBERON:0004572,4.53e-13,42;UBERON:0004535,8.66e-13,109;UBERON:0001009,1.47e-11,112;UBERON:0004573,2.04e-10,33;UBERON:0004571,2.04e-10,33;UBERON:0002199,2.55e-08,46;UBERON:0002416,2.55e-08,46;UBERON:0005085,8.68e-08,31;UBERON:0002097,4.80e-07,41;UBERON:0004111,8.26e-07,240 | |||
|phase1_expression=5.4503513781167,11.3473277662221,8.3163098416623,9.00659685178174,16.0905993993824,5.23403114460221,7.59899634504932,13.2661173419635,39.9614011145753,11.3037610790694,27.9120467188971,5.02415155899396,7.64924236862515,14.9757287081656,32.1455454456078,10.0848771967766,13.8619741445515,10.9546513558106,18.5414463540393,10.0959267622966,18.7680635944713,10.3440058087769,1.14494394852423,4.92747930262383,3.76627918784408,0.0764134057479513,0.0821005894499457,0,0,0,0,23.9049518364521,21.9880320708123,24.7735186811748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,43.8852359365131,11.4019146149618,10.7404551948565,9.39741796199872,10.0267582127178,14.0501123391999,2.3858578411533,4.86634870302636,6.80650683581289,14.1906814376041,12.4725395684239,0.458426764241994,43.3511393068125,21.8762821242813,0.324547393654683,0.174129737299267,0.132957960518865,0,0,0,5.76410981363445,9.46258054616737,14.9270415691266,5.6530794192401,18.8774746294458,10.4544855937226,8.77778859454604,8.78616981175718,9.60568909254118,7.02913286805807,8.86224497640123,15.9657142200888,11.470916704764,10.2945662496843,16.2028389576352,5.98308179503334,8.08305741454211,7.99541511431588,6.13266549863533,7.59412527654503,5.1296488300514,0,0,28.7822074414073,14.9091585508596,11.6500070731413,11.6520079115633,9.75244510545967,8.51204117276057,13.4562624034154,10.6748995729705,19.7334038733728,15.5605517699883,7.81321898004191,11.4423332179421,13.319453632754,10.37116664064,9.37285727335187,34.3376084513353,7.41613368007784,10.9097536802815,5.28455243896942,2.91371299862637,4.07307339436521,16.5364878716464,8.47556789451199,15.7055187387163,11.8800285728205,13.5996811103206,24.5743567723267,35.9309070908119,3.53505839303539,4.75450375513464,11.9137569658199,8.34057479673592,14.4049264025539,12.3195208303409,8.6208459201616,7.89314397030993,9.61008249683553,10.172731255659,6.60200411385685,9.89304280689013,13.6549486224183,14.3309979375324,5.23206629947925,11.2052555935378,4.29137416214995,5.61504381718026,6.62748832957129,6.03516307278244,11.2842350014957,13.564847384839,18.5530419036765,27.5473581796743,26.3860227757884,2.80539524098069,1.06023814657188,2.09149097165133,4.35376431064556,6.05570042101508,2.18986415445498,28.1609158193669,28.9458422186798,19.3388889893473,25.5402360417588,54.1409611252189,1.18306800039844,1.01150814046861,0.723033089650446,1.65440959098591,1.52515610864684,0.949082476444386,1.48314438976181,0.784885860501384,0.769494313892781,16.2394200017423,21.0362660705169,17.6976824872502,19.1111324801205,0,1.96565443335525,2.95394953340702,0,0.245976877086227,18.3577557019422,39.8393536033311,24.7283857166763,5.02644862058154,27.6839451024003,8.79682424337877,25.9983696319895,21.649701303791,7.88326753830522,17.4938954411374,10.1056513432752,9.72269576410883,7.99067439385313,0,0,0,0,0,12.185398418281,13.102605999511,13.8939595297539,28.92740283302,27.9008580973403,16.4854552041041,0,0.088048434013226,0,0.288239906833923,0,0.63497894292169,5.34783795781589,4.68869788840188,5.13217338068116,1.54241239054985,3.00343057843917,1.71495859578347,7.40065156679381,5.66748089483264,6.08707772313885,13.0564432915356,64.3781602533388,6.762422020448,16.2222251116771,14.5610411675913,15.6896498299907,15.6034045225606,25.5765291855455,10.8663275180192,19.5343777940919,18.1112874091769,8.79487697593085,9.24019066730619,11.087326221068,17.1820444923964,31.3752045096106,24.2934368572399,0,0,0,16.054865317936,8.04033550838797,21.3955357561078,21.1380707734666,17.4654874167826,15.9364257283507,0,0,0,0,2.28685161800217,2.60279707715243,1.54657762555539,0.335032530668698,0,0,0,0,14.9683619897351,18.5063092792081,16.0046363982844,8.52680532276309,11.2410262942212,13.0893004478166,8.66846470946078,11.736897889381,22.7407504055985,6.2083842775503,7.97070718242524,12.3527342922941,12.8587749412763,12.1396717626899,6.51972505240626,0,0,0,3.94065842880137,8.32177197552485,3.32629322662648,7.44323423456331,5.98501695823444,6.73584226639377,7.43207065683066,10.7458522304008,9.81208918976006,10.3892646511494,9.86942040336996,13.1395676731714,9.033987161519,14.5391240171414,9.99409254755649,0.483437798366489,56.5428246255263,25.8747578909869,14.4666204687404,15.1135669445575,16.390551869928,7.21919380651859,4.31285887784723,9.41219723012226,7.30696123266303,4.22206515571503,15.9226737699255,18.2000264645872,13.3867867983326,16.9649977959318,13.5473218771926,12.5422443463713,3.3133915495855,5.81753206250107,5.1491193586101,0.219259876645935,0,6.92415337814251,7.87235149679294,2.92840555197873,1.03041011647722,3.84591752237042,3.30037999682352,50.5353673436632,50.7046991908487,8.03419649220798,5.7035723792352,10.0131601124519,9.05671680884164,6.89182862422653,8.91588032406671,14.6466860853371,7.58516984003298,5.9651463883314,28.4290054420882,22.2940478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| |||
|short_description=p4@SHC1 | |||
}} |
Latest revision as of 10:45, 17 September 2015
Short description: | p4@SHC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SHC1_5end |
Coexpression cluster: | C2529_Mesenchymal_Corneal_Urothelial_Cardiac_salivary_Sebocyte_Esophageal |
Association with transcript: | 24bp_to_ENST00000368445_5end |
EntrezGene: | SHC1 |
HGNC: | 10840 |
UniProt: | P29353 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 3.19e-38 | 250 |
mesodermal cell | 1.40e-27 | 121 |
muscle precursor cell | 3.07e-18 | 58 |
myoblast | 3.07e-18 | 58 |
multi-potent skeletal muscle stem cell | 3.07e-18 | 58 |
muscle cell | 7.61e-17 | 55 |
smooth muscle cell | 9.01e-15 | 43 |
smooth muscle myoblast | 9.01e-15 | 43 |
electrically responsive cell | 1.02e-14 | 61 |
electrically active cell | 1.02e-14 | 61 |
fibroblast | 2.02e-13 | 76 |
vascular associated smooth muscle cell | 1.12e-11 | 32 |
epithelial cell | 4.07e-11 | 253 |
lining cell | 1.13e-10 | 58 |
barrier cell | 1.13e-10 | 58 |
squamous epithelial cell | 9.01e-08 | 63 |
ectodermal cell | 1.70e-07 | 72 |
meso-epithelial cell | 4.25e-07 | 45 |