FFCP PHASE1:Hg19::chr8:70983506..70983522,-: Difference between revisions
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|id=chr8:70983506..70983522,-
|short_description=p3@PRDM14
|description=CAGE_peak_3_at_PRDM14_5end
|association_with_transcript=39bp_to_ENST00000276594,NM_024504,uc...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=63978 | |EntrezGene=63978 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14001 | |HGNC=14001 | ||
|TSSclassifier=strong | |||
|UniProt=Q9GZV8 | |UniProt=Q9GZV8 | ||
|association_with_transcript=39bp_to_ENST00000276594,NM_024504,uc003xym.2_5end | |||
|cluster_id=chr8:70983506..70983522,- | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_3_at_PRDM14_5end | |||
|id=chr8:70983506..70983522,- | |||
|ontology_enrichment_celltype=CL:0002322!8.08e-53!5;CL:0000039!2.62e-24!7;CL:0000586!2.62e-24!7;CL:0000540!2.00e-16!6;CL:0000031!2.00e-16!6;CL:0000404!2.00e-16!6;CL:0000047!1.81e-12!8;CL:0000148!3.87e-10!10;CL:0000541!3.87e-10!10;CL:0000147!2.20e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0002322;4.16e-66;5!CL:0000039;2.34e-30;7!CL:0000586;2.34e-30;7!CL:0002321;3.71e-22;15!CL:0000540;2.27e-20;6!CL:0000404;2.27e-20;6!CL:0000148;1.44e-12;10!CL:0000147;3.85e-09;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,4.76e-66,5;CL:0000039,2.43e-30,7;CL:0000586,2.43e-30,7;CL:0000540,2.12e-20,6;CL:0000031,2.12e-20,6;CL:0000404,2.12e-20,6;CL:0000047,1.81e-15,8;CL:0000148,1.44e-12,10;CL:0000541,1.44e-12,10;CL:0000147,3.85e-09,14;CL:0000133,1.64e-07,59 | |||
|ontology_enrichment_development_v019=UBERON:0009117;4.25e-33;10!UBERON:0005564;4.25e-33;10!CL:0000031;2.27e-20;6 | |||
|ontology_enrichment_disease=DOID:3095!9.88e-23!22;DOID:2994!9.88e-23!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;2.34e-21;22!DOID:2994;2.34e-21;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,2.34e-21,22;DOID:2994,2.34e-21,22 | |||
|ontology_enrichment_uberon=UBERON:0000473!1.43e-32!8;UBERON:0003135!1.05e-23!11;UBERON:0000991!1.06e-17!21;UBERON:0009196!1.06e-17!21;UBERON:0009117!1.06e-17!21;UBERON:0005564!1.06e-17!21;UBERON:0004176!7.01e-17!22;UBERON:0003101!7.78e-12!22;UBERON:0000079!7.78e-12!22;UBERON:0002323!7.22e-08!46;UBERON:0003133!1.60e-07!48;UBERON:0004458!2.33e-07!49 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;1.28e-26;8!UBERON:0003135;1.81e-19;11!UBERON:0000991;8.27e-16;21!UBERON:0000922;3.48e-13;49!UBERON:0003101;6.96e-10;22!UBERON:0000079;6.96e-10;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.32e-26,8;UBERON:0003135,1.85e-19,11;UBERON:0000991,8.40e-16,21;UBERON:0009196,8.40e-16,21;UBERON:0009117,8.40e-16,21;UBERON:0005564,8.40e-16,21;UBERON:0004176,4.38e-15,22;UBERON:0003101,7.05e-10,22;UBERON:0000079,7.05e-10,22;UBERON:0002323,3.46e-07,46;UBERON:0003133,6.96e-07,48;UBERON:0004458,9.66e-07,49 | |||
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|short_description=p3@PRDM14 | |||
}} | }} |
Latest revision as of 23:54, 18 September 2015
Short description: | p3@PRDM14 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PRDM14_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | 39bp_to_ENST00000276594, NM_024504, uc003xym.2_5end |
EntrezGene: | PRDM14 |
HGNC: | 14001 |
UniProt: | Q9GZV8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 4.76e-66 | 5 |
germ line cell | 2.43e-30 | 7 |
germ cell | 2.43e-30 | 7 |
neuron | 2.12e-20 | 6 |
neuroblast | 2.12e-20 | 6 |
electrically signaling cell | 2.12e-20 | 6 |
neuronal stem cell | 1.81e-15 | 8 |
melanocyte | 1.44e-12 | 10 |
melanoblast | 1.44e-12 | 10 |
pigment cell | 3.85e-09 | 14 |
neurectodermal cell | 1.64e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
testis | 1.32e-26 | 8 |
male reproductive organ | 1.85e-19 | 11 |
gonad | 8.40e-16 | 21 |
indifferent external genitalia | 8.40e-16 | 21 |
indifferent gonad | 8.40e-16 | 21 |
gonad primordium | 8.40e-16 | 21 |
external genitalia | 4.38e-15 | 22 |
male organism | 7.05e-10 | 22 |
male reproductive system | 7.05e-10 | 22 |
body cavity | 3.46e-07 | 46 |
reproductive organ | 6.96e-07 | 48 |
body cavity or lining | 9.66e-07 | 49 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 2.34e-21 | 22 |
germ cell cancer | 2.34e-21 | 22 |