FFCP PHASE1:Hg19::chr17:80274730..80274786,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr17:80274730..80274786,- | |||
|coexpression_cluster_id=C2445 | |||
|description=CAGE_peak_at_chr17:80274730..80274786,- | |||
|id=chr17:80274730..80274786,- | |||
|ontology_enrichment_celltype=CL:0000791!4.85e-20!18;CL:0000789!4.85e-20!18;CL:0002420!4.85e-20!18;CL:0002419!4.85e-20!18;CL:0000790!4.85e-20!18;CL:0000084!1.22e-19!25;CL:0000827!1.22e-19!25;CL:0002087!1.13e-14!119;CL:0000738!5.81e-14!140;CL:0000625!2.97e-13!11;CL:0000037!1.29e-11!172;CL:0000566!1.29e-11!172;CL:0002031!5.06e-11!124;CL:0000988!2.07e-10!182;CL:0002032!3.42e-10!165;CL:0000837!3.42e-10!165;CL:0002057!3.12e-09!42;CL:0000860!6.93e-09!45;CL:0000838!2.26e-08!52;CL:0000542!4.55e-08!53;CL:0000051!4.55e-08!53;CL:0000624!1.40e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000791;3.95e-36;18!CL:0000789;3.95e-36;18!CL:0002419;3.95e-36;18!CL:0000084;3.83e-31;25!CL:0000625;2.12e-23;11!CL:0000624;8.69e-13;6!CL:0000542;9.10e-09;53!CL:0000623;2.19e-08;3!CL:0000226;1.30e-07;3!CL:0000842;1.30e-07;3!CL:0000898;6.19e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,4.29e-36,18;CL:0000789,4.29e-36,18;CL:0002420,4.29e-36,18;CL:0002419,4.29e-36,18;CL:0000790,4.29e-36,18;CL:0000084,3.89e-31,25;CL:0000827,3.89e-31,25;CL:0000625,2.25e-23,11;CL:0002087,7.76e-19,115;CL:0000738,2.39e-17,136;CL:0000838,5.09e-17,52;CL:0000542,1.42e-16,53;CL:0000051,1.42e-16,53;CL:0000037,1.51e-15,168;CL:0002031,3.40e-14,120;CL:0000988,3.82e-14,177;CL:0002032,7.29e-13,161;CL:0000837,7.29e-13,161;CL:0000624,8.62e-13,6;CL:0000623,2.24e-08,3;CL:0000825,2.24e-08,3;CL:0000226,1.41e-07,3;CL:0000842,1.41e-07,3;CL:0000898,5.70e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;3.95e-36;18!CL:0000051;9.10e-09;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.68e-11!102;UBERON:0003061!3.68e-11!102;UBERON:0000178!1.88e-10!15;UBERON:0000179!1.88e-10!15;UBERON:0000463!1.88e-10!15;UBERON:0002193!2.28e-10!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.30e-19;15!UBERON:0000179;3.30e-19;15!UBERON:0000463;3.30e-19;15!UBERON:0002390;1.41e-12;32!UBERON:0002193;9.00e-08;42!UBERON:0004177;5.41e-07;5!UBERON:0005057;5.41e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.48e-19,15;UBERON:0000179,2.48e-19,15;UBERON:0000463,2.48e-19,15;UBERON:0002390,8.32e-13,98;UBERON:0003061,8.32e-13,98;UBERON:0002193,6.49e-12,108;UBERON:0004177,3.53e-10,7;UBERON:0005057,3.53e-10,7;UBERON:0002370,7.52e-09,4;UBERON:0005058,7.52e-09,4;UBERON:0009113,7.52e-09,4;UBERON:0003295,7.52e-09,4;UBERON:0005562,7.52e-09,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.786728553697808,1.91914699048606,1.70297735647684,0,0,0,0,0,0,1.10799081706375,1.80490002723128,3.47217393145363,0,0.32389366601898,0.257575567634187,0.290796477559129,0,0.242584061187816,0.697287110717054,0.822335776043652,0,1.7261543539329,2.30544635876191,1.6553756092201,0,0,0,0.376484679085209,0.272906150057846,0,0.918251677112708,0.641858054152187,0.639337125799041,1.9791078011203,1.99463657621632,1.70489900213078,0.290209238628584,1.13477044938228,1.24564449799115,3.01498398308092,2.60741459210101,0.434377689410233,0,0,0.949387162322653,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,1.37696839079683,14.9344089844683,5.55124047298675,6.35308682484577,2.93330039970231,0.946895611469467,7.79306913631645,4.12218690475142,3.53527088969805,2.65840673500345,5.1452734115353,4.73937882984998,4.55207716459574,12.9905944636904,11.8830507647915,10.1431080007268,10.6766325476683,4.81573490561484,17.7710390468461,7.7050353034345,2.29932296161153,2.06176467289578,3.79529538029254,4.45991580053735,3.25541726928209,3.8018081777935,3.46322773878877,4.35154477925022,8.74515085866421,5.6826540490564,2.46338399076314,4.43534835094411,13.9068901807424,10.5721814834443,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,1.43094374583205,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0,0,0,0,0,0.122834317311768,0.206651562351531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232387885739037,0.207322110030741,0.252320850875628,0,0,0,0,0,0.721879481669586,0,0,0,0,0,0.237270619111097,0,0,0,0,0,0,0,0,0,0,4.85609409356116,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0.266422179016099,0.285955987316295,15.1934049509604,0.823240336780769,0,0,0,2.1100756394171,1.74306691720059,2.59929777073348,0,0,0,0,0,0,0,0,0,1.45710687191585,8.27529192848094,18.9752265876375,11.4225302288976,0,1.30139853857622,0,0,0,0.749007023947182,0,0,0,0.500170521059677,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,2.06768026122887,10.5699958401122,5.97674323699288,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0.0915694648183434,0,0,0,0,0.096670718292122,0,0.15350367472613,0.137836572484531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0.48763373908959,0.243713489631284,0,0,0.141405431953713,0,0,0,0,0,0,0,0.30982349809975,0,0.143411352204052,0,0,0,0.211107635297664,0,0,0.349934720244983,0,0,0,0,0,0,0,0,4.05958087385735,3.82318603571188,6.83576624608995,3.57347663186684,2.87953591160336,1.94541993357815,2.70015718619057,12.6900028207083,0.320472213382419,0,0,0,0,0.497992903438899,4.78278818186467,4.59032554295478,5.36215036370627,0,0,2.24637742490767,0,0,0,4.06300266723848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222886768554957,0,0,0,0,0,0,0,0,0,0,1.38141957765574,0,0,0,0,0,0,0,0.0986434056369336,14.3689855408164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.461701551022782,0,0,0.448788222048861,0,0,0,0.533034776018635,17.3728606932752,0.470940769185074,0,0,0,0,0,0.476809736941136,0,0,0,0,0.995261931078505,0.442287822516696,0.611030144933625,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0.31593289814244,0,0,0,0,0,0,0,0,0.173559738335131,0,0,0.34945333648406,0,0,0.146178634172371,0,0.0969890164884194,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,6.30265458457789,7.99433826297315,5.52709059604316,0,0,0,0,0.160753148465019,0.137539436597234,0,0,0,0,0,0.0788057072991982,0.0524545881349981,0,0,0,0.714695326373367,0,0,12.4889908403354,0,3.5924609612035,0,0,0,0,0,1.32506888912221,0,0,0,0,0.640724475406168,0.157204305099666,1.24271716604159,7.93865634899121,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265841714557995,0,0.450772826991655,1.90402606084398,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168942440653073,0,0,0,0,0.194860308839388,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0.3062454773532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.175871244359621,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0.078493092850514,0.314231179832004,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0.118332000730565,0,0,0,0,0,0.223710863595585,0,0,0,0,0,0,0,0,0,0,0,0,0.617393264863557,0.655678681511872,0,0,0,0.196308467114945,0,0,0,1.87967835959707,1.61144719933943,0,0,0,0,0,0.458729283404541,0,0.315543124386369,0,0,3.1741610430924,0,0,0,0,0.109265571963696,0,0.101988829741982,0,0.0918948995348449,0.250707539292375,0.151557396436479,0,0,0,0.213233981900981,0.23806443146374,9.36539192622089,3.22788514338461,0,0.12729431655633,0.202117188958219,0.217716747896961,0,0.875576689189638,0.358611026963382,0,0,0,0,0,2.34640942403454,0.244482888365733,0,0,3.8242020782295,0 | |||
|short_description=p@chr17:80274730..80274786,- | |||
}} |
Latest revision as of 23:04, 25 July 2015
Short description: | p@chr17:80274730..80274786, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:80274730..80274786, - |
Coexpression cluster: | C2445_Mesenchymal_CD4_Natural_acute_thymus_CD8_hepatocellular |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 4.29e-36 | 18 |
alpha-beta T cell | 4.29e-36 | 18 |
immature T cell | 4.29e-36 | 18 |
mature T cell | 4.29e-36 | 18 |
immature alpha-beta T cell | 4.29e-36 | 18 |
T cell | 3.89e-31 | 25 |
pro-T cell | 3.89e-31 | 25 |
CD8-positive, alpha-beta T cell | 2.25e-23 | 11 |
nongranular leukocyte | 7.76e-19 | 115 |
leukocyte | 2.39e-17 | 136 |
lymphoid lineage restricted progenitor cell | 5.09e-17 | 52 |
lymphocyte | 1.42e-16 | 53 |
common lymphoid progenitor | 1.42e-16 | 53 |
hematopoietic stem cell | 1.51e-15 | 168 |
hematopoietic lineage restricted progenitor cell | 3.40e-14 | 120 |
hematopoietic cell | 3.82e-14 | 177 |
hematopoietic oligopotent progenitor cell | 7.29e-13 | 161 |
hematopoietic multipotent progenitor cell | 7.29e-13 | 161 |
CD4-positive, alpha-beta T cell | 8.62e-13 | 6 |
natural killer cell | 2.24e-08 | 3 |
pro-NK cell | 2.24e-08 | 3 |
single nucleate cell | 1.41e-07 | 3 |
mononuclear cell | 1.41e-07 | 3 |
naive T cell | 5.70e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 2.48e-19 | 15 |
haemolymphatic fluid | 2.48e-19 | 15 |
organism substance | 2.48e-19 | 15 |
hematopoietic system | 8.32e-13 | 98 |
blood island | 8.32e-13 | 98 |
hemolymphoid system | 6.49e-12 | 108 |
hemopoietic organ | 3.53e-10 | 7 |
immune organ | 3.53e-10 | 7 |
thymus | 7.52e-09 | 4 |
hemolymphoid system gland | 7.52e-09 | 4 |
thymic region | 7.52e-09 | 4 |
pharyngeal gland | 7.52e-09 | 4 |
thymus primordium | 7.52e-09 | 4 |