FFCP PHASE1:Hg19::chr8:55370693..55370704,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr8:55370693..55370704,+
|short_description=p4@SOX17
|description=CAGE_peak_4_at_SOX17_5end
|association_with_transcript=198bp_to_ENST00000297316,NM_022454,uc0...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=64321 | |EntrezGene=64321 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18122 | |HGNC=18122 | ||
|TSSclassifier=strong | |||
|UniProt=Q9H6I2 | |UniProt=Q9H6I2 | ||
|association_with_transcript=198bp_to_ENST00000297316,NM_022454,uc003xsb.3_5end | |||
|cluster_id=chr8:55370693..55370704,+ | |||
|coexpression_cluster_id=C4762 | |||
|description=CAGE_peak_4_at_SOX17_5end | |||
|id=chr8:55370693..55370704,+ | |||
|ontology_enrichment_celltype=CL:0002139!2.40e-28!24;CL:0000359!1.05e-27!32;CL:0000222!3.87e-25!119;CL:0000115!5.11e-24!35;CL:0000192!2.44e-19!42;CL:0000514!2.44e-19!42;CL:0000071!2.67e-19!18;CL:0002546!2.67e-19!18;CL:0002078!1.26e-17!44;CL:0000183!1.77e-15!59;CL:0000187!1.03e-14!54;CL:0000393!1.08e-13!60;CL:0000211!1.08e-13!60;CL:0000680!1.45e-13!57;CL:0000056!1.45e-13!57;CL:0000355!1.45e-13!57;CL:0000213!1.82e-13!57;CL:0000215!1.82e-13!57;CL:0002539!3.21e-12!10;CL:0005020!7.09e-11!6;CL:0002138!7.09e-11!6;CL:0005022!7.09e-11!6;CL:1000413!1.37e-10!9;CL:0000220!6.11e-09!246;CL:0002321!9.26e-09!248;CL:0002543!4.79e-08!6;CL:0002494!6.39e-08!16;CL:1000306!1.16e-07!4;CL:0002547!1.16e-07!4;CL:0002592!4.36e-07!3;CL:0002595!7.32e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0000359;3.16e-23;32!CL:0000071;4.78e-22;18!CL:0002139;2.33e-16;24!CL:1000413;4.94e-15;9!CL:0000115;6.73e-15;36!CL:0000192;7.16e-13;43!CL:0002144;2.20e-12;3!CL:0002592;4.44e-12;3!CL:0000187;1.06e-09;55!CL:0000511;1.10e-09;1!CL:0002625;1.10e-09;1!CL:0000216;1.10e-09;1!CL:0002078;1.48e-09;45!CL:0002539;3.54e-08;10!CL:0000213;9.06e-08;58!CL:0000215;9.06e-08;58!CL:0002595;1.36e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,1.06e-24,32;CL:0000222,2.15e-24,121;CL:0000071,8.03e-22,18;CL:0002546,8.03e-22,18;CL:0000192,5.44e-18,43;CL:0000514,5.44e-18,43;CL:0000115,2.00e-17,36;CL:0002139,3.42e-16,24;CL:1000413,9.90e-15,9;CL:0000187,1.00e-13,55;CL:0002078,1.10e-13,45;CL:0000680,6.18e-13,58;CL:0000056,6.18e-13,58;CL:0000355,6.18e-13,58;CL:0000213,7.79e-13,58;CL:0000215,7.79e-13,58;CL:0002144,1.29e-12,3;CL:0002321,1.32e-12,250;CL:0002592,3.01e-12,3;CL:0000393,3.19e-12,61;CL:0000211,3.19e-12,61;CL:0000511,5.31e-10,1;CL:0002625,5.31e-10,1;CL:0000216,5.31e-10,1;CL:0002539,2.58e-08,10;CL:0002595,1.72e-07,5;CL:0000076,1.99e-07,63 | |||
|ontology_enrichment_development_v019=CL:0002546;4.78e-22;18!CL:0000514;7.16e-13;43!CL:0000355;4.58e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0001637;3.76e-32;42!UBERON:0003509;3.76e-32;42!UBERON:0004572;3.76e-32;42!UBERON:0007500;1.83e-30;56!UBERON:0001981;1.83e-30;56!UBERON:0004537;1.83e-30;56!UBERON:0004573;1.92e-27;33!UBERON:0004571;1.92e-27;33!UBERON:0000487;2.77e-23;22!UBERON:0004638;4.78e-22;18!UBERON:0001986;4.78e-22;18!UBERON:0004852;4.78e-22;18!UBERON:0006914;2.26e-20;25!UBERON:0003914;4.66e-18;74!UBERON:0000055;4.22e-16;65!UBERON:0003915;4.94e-15;9!UBERON:0004700;4.94e-15;9!UBERON:0001917;4.94e-15;9!UBERON:0000490;1.56e-14;33!UBERON:0002049;4.78e-13;75!UBERON:0007798;4.78e-13;75!UBERON:0010523;2.20e-12;3!UBERON:0001915;2.20e-12;3!UBERON:0001982;2.20e-12;3!UBERON:0003498;4.44e-12;3!UBERON:0005985;4.44e-12;3!UBERON:0001621;4.44e-12;3!UBERON:0003513;2.71e-11;7!UBERON:0000947;7.01e-10;21!UBERON:0010191;7.01e-10;21!UBERON:0001136;1.10e-09;1!UBERON:0001343;1.10e-09;1!UBERON:0004910;1.10e-09;1!UBERON:0004813;1.10e-09;1!UBERON:0000025;1.99e-08;93!UBERON:0004237;3.54e-08;10!UBERON:0004695;3.54e-08;10!UBERON:0002111;3.54e-08;10!UBERON:0004178;3.54e-08;10!UBERON:0001009;1.07e-07;112!UBERON:0003834;1.36e-07;5!UBERON:0001533;1.36e-07;5!UBERON:0004535;1.48e-07;109!UBERON:0000119;6.93e-07;139 | |||
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| ||
|short_description=p4@SOX17 | |||
}} | }} |
Latest revision as of 12:39, 18 September 2015
Short description: | p4@SOX17 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SOX17_5end |
Coexpression cluster: | C4762_Endothelial_Wilms_mature_Renal_endometrioid_Smooth_Lymphatic |
Association with transcript: | 198bp_to_ENST00000297316, NM_022454, uc003xsb.3_5end |
EntrezGene: | SOX17 |
HGNC: | 18122 |
UniProt: | Q9H6I2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 1.06e-24 | 32 |
mesodermal cell | 2.15e-24 | 121 |
blood vessel endothelial cell | 8.03e-22 | 18 |
embryonic blood vessel endothelial progenitor cell | 8.03e-22 | 18 |
smooth muscle cell | 5.44e-18 | 43 |
smooth muscle myoblast | 5.44e-18 | 43 |
endothelial cell | 2.00e-17 | 36 |
endothelial cell of vascular tree | 3.42e-16 | 24 |
endothelial cell of artery | 9.90e-15 | 9 |
muscle cell | 1.00e-13 | 55 |
meso-epithelial cell | 1.10e-13 | 45 |
muscle precursor cell | 6.18e-13 | 58 |
myoblast | 6.18e-13 | 58 |
multi-potent skeletal muscle stem cell | 6.18e-13 | 58 |
lining cell | 7.79e-13 | 58 |
barrier cell | 7.79e-13 | 58 |
capillary endothelial cell | 1.29e-12 | 3 |
embryonic cell | 1.32e-12 | 250 |
smooth muscle cell of the coronary artery | 3.01e-12 | 3 |
electrically responsive cell | 3.19e-12 | 61 |
electrically active cell | 3.19e-12 | 61 |
androgen binding protein secreting cell | 5.31e-10 | 1 |
seminiferous tubule epithelial cell | 5.31e-10 | 1 |
Sertoli cell | 5.31e-10 | 1 |
aortic smooth muscle cell | 2.58e-08 | 10 |
smooth muscle cell of the subclavian artery | 1.72e-07 | 5 |
squamous epithelial cell | 1.99e-07 | 63 |