FFCP PHASE1:Hg19::chr17:47785265..47785332,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10237 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20798 | |||
|TSSclassifier=strong | |||
|UniProt=P78383,B4DJG9,D6R9G9,D6RHG0 | |||
|association_with_transcript=0bp_to_ENST00000240333,ENST00000415270,ENST00000435059,ENST00000508607,ENST00000509781,ENST00000511763,ENST00000515850,NM_005827,uc002iph.1,uc002ipi.1,uc010wly.1_5end | |||
|cluster_id=chr17:47785265..47785332,- | |||
|description=CAGE_peak_1_at_SLC35B1_5end | |||
|id=chr17:47785265..47785332,- | |||
|ontology_enrichment_celltype=CL:0000220!1.75e-20!246;CL:0002321!4.39e-20!248;CL:0000066!9.80e-19!254;CL:0000548!2.84e-16!679;CL:0000004!2.84e-16!679;CL:0000255!2.84e-16!679;CL:0000012!1.44e-15!682;CL:0000055!6.26e-11!180;CL:0000223!4.12e-08!59;CL:0000359!6.78e-08!32;CL:0000222!7.87e-08!119;CL:0000192!2.52e-07!42;CL:0000514!2.52e-07!42;CL:0000144!4.12e-07!625;CL:0000393!4.89e-07!60;CL:0000211!4.89e-07!60 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.95e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.28e-19,250;CL:0000066,3.80e-19,253;CL:0000223,3.14e-08,58;CL:0000359,6.78e-08,32;CL:0000222,1.86e-07,121;CL:0000192,9.34e-07,43;CL:0000514,9.34e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!4.18e-15!143;DOID:305!6.56e-12!106;DOID:14566!4.07e-11!239;DOID:162!6.98e-11!235 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,4.18e-15,143;DOID:305,6.56e-12,106;DOID:14566,4.07e-11,239;DOID:162,6.98e-11,235 | |||
|ontology_enrichment_uberon=UBERON:0003104!1.57e-12!238;UBERON:0009142!1.57e-12!238;UBERON:0000490!2.81e-12!138;UBERON:0002100!3.25e-12!216;UBERON:0003914!3.49e-11!118;UBERON:0000926!7.41e-10!448;UBERON:0004120!7.41e-10!448;UBERON:0006603!7.41e-10!448;UBERON:0005256!1.83e-09!143;UBERON:0001637!6.87e-09!42;UBERON:0003509!6.87e-09!42;UBERON:0004572!6.87e-09!42;UBERON:0001981!2.99e-08!60;UBERON:0007500!2.99e-08!60;UBERON:0004537!2.99e-08!60;UBERON:0006965!2.99e-08!60;UBERON:0009569!5.65e-08!113;UBERON:0000055!8.59e-08!69;UBERON:0004872!1.63e-07!84;UBERON:0000480!1.86e-07!626;UBERON:0000468!2.07e-07!659;UBERON:0004119!2.80e-07!169;UBERON:0000925!2.80e-07!169;UBERON:0006595!2.80e-07!169;UBERON:0000467!3.50e-07!625;UBERON:0000486!4.67e-07!82;UBERON:0004290!5.83e-07!70 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;8.08e-07;42!UBERON:0003509;8.08e-07;42!UBERON:0004572;8.08e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,1.97e-13,199;UBERON:0000490,1.28e-12,148;UBERON:0003914,1.26e-11,117;UBERON:0005256,1.08e-09,122;UBERON:0001637,6.87e-09,42;UBERON:0003509,6.87e-09,42;UBERON:0004572,6.87e-09,42;UBERON:0003104,8.08e-09,160;UBERON:0009142,8.08e-09,160;UBERON:0007500,3.98e-08,59;UBERON:0001981,3.98e-08,59;UBERON:0004537,3.98e-08,59;UBERON:0006965,3.98e-08,59;UBERON:0009569,4.93e-08,112;UBERON:0000055,1.14e-07,68;UBERON:0004872,2.14e-07,83;UBERON:0007503,3.24e-07,78;UBERON:0004119,4.50e-07,160;UBERON:0000925,4.50e-07,160;UBERON:0006595,4.50e-07,160 | |||
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| |||
|short_description=p1@SLC35B1 | |||
}} |
Latest revision as of 21:30, 15 September 2015
Short description: | p1@SLC35B1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SLC35B1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000240333, ENST00000415270, ENST00000435059, ENST00000508607, ENST00000509781, ENST00000511763, ENST00000515850, NM_005827, uc002iph.1, uc002ipi.1, uc010wly.1_5end |
EntrezGene: | SLC35B1 |
HGNC: | 20798 |
UniProt: | P78383B4DJG9D6R9G9D6RHG0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.28e-19 | 250 |
epithelial cell | 3.80e-19 | 253 |
endodermal cell | 3.14e-08 | 58 |
vascular associated smooth muscle cell | 6.78e-08 | 32 |
mesodermal cell | 1.86e-07 | 121 |
smooth muscle cell | 9.34e-07 | 43 |
smooth muscle myoblast | 9.34e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
trunk | 1.97e-13 | 199 |
unilaminar epithelium | 1.28e-12 | 148 |
epithelial tube | 1.26e-11 | 117 |
trunk mesenchyme | 1.08e-09 | 122 |
artery | 6.87e-09 | 42 |
arterial blood vessel | 6.87e-09 | 42 |
arterial system | 6.87e-09 | 42 |
mesenchyme | 8.08e-09 | 160 |
entire embryonic mesenchyme | 8.08e-09 | 160 |
epithelial tube open at both ends | 3.98e-08 | 59 |
blood vessel | 3.98e-08 | 59 |
blood vasculature | 3.98e-08 | 59 |
vascular cord | 3.98e-08 | 59 |
subdivision of trunk | 4.93e-08 | 112 |
vessel | 1.14e-07 | 68 |
splanchnic layer of lateral plate mesoderm | 2.14e-07 | 83 |
epithelial vesicle | 3.24e-07 | 78 |
endoderm-derived structure | 4.50e-07 | 160 |
endoderm | 4.50e-07 | 160 |
presumptive endoderm | 4.50e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 4.18e-15 | 143 |
carcinoma | 6.56e-12 | 106 |
disease of cellular proliferation | 4.07e-11 | 239 |
cancer | 6.98e-11 | 235 |