FFCP PHASE1:Hg19::chr17:47286295..47286308,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2793 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4412 | |||
|TSSclassifier=strong | |||
|UniProt=D6RDH5 | |||
|association_with_transcript=-21bp_to_ENST00000503070_5end | |||
|cluster_id=chr17:47286295..47286308,- | |||
|coexpression_cluster_id=C24 | |||
|description=CAGE_peak_5_at_GNGT2_5end | |||
|id=chr17:47286295..47286308,- | |||
|ontology_enrichment_celltype=CL:0000623!2.48e-30!3;CL:0000825!2.48e-30!3;CL:0000842!3.39e-14!3;CL:0000224!6.99e-11!4;CL:0000080!1.52e-07!6 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;2.64e-38;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5409;2.43e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,2.43e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0001905!9.15e-22!2;UBERON:0002757!9.15e-22!2;UBERON:0010134!9.15e-22!2;UBERON:0002784!9.15e-22!2;UBERON:0005408!9.15e-22!2;UBERON:0001899!9.15e-22!2;UBERON:0003296!2.30e-11!4;UBERON:0010133!2.30e-11!4;UBERON:0000966!3.67e-09!5;UBERON:0005388!3.67e-09!5;UBERON:0001802!3.67e-09!5;UBERON:0000970!2.07e-08!20;UBERON:0002104!5.13e-08!21;UBERON:0000020!2.49e-07!23;UBERON:0001032!4.97e-07!24;UBERON:0004456!4.97e-07!24;UBERON:0001894!7.46e-07!7;UBERON:0006222!7.46e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;1.13e-57;2!UBERON:0002757;1.13e-57;2!UBERON:0010134;1.13e-57;2!UBERON:0005408;1.13e-57;2!UBERON:0001899;1.13e-57;2!UBERON:0003296;1.78e-29;4!UBERON:0010133;1.78e-29;4!UBERON:0002784;1.78e-29;4!UBERON:0000966;1.81e-23;5!UBERON:0005388;1.81e-23;5!UBERON:0001802;1.81e-23;5!UBERON:0001894;2.46e-17;7!UBERON:0000970;1.92e-13;20!UBERON:0002104;7.73e-13;21!UBERON:0000020;8.72e-12;23!UBERON:0001032;2.52e-11;24!UBERON:0004456;2.52e-11;24!UBERON:0000019;6.57e-07;19!UBERON:0000047;6.57e-07;19!UBERON:0004088;6.57e-07;19!UBERON:0010230;6.57e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,1.13e-57,2;UBERON:0002757,1.13e-57,2;UBERON:0010134,1.13e-57,2;UBERON:0005408,1.13e-57,2;UBERON:0001899,1.13e-57,2;UBERON:0003296,1.78e-29,4;UBERON:0010133,1.78e-29,4;UBERON:0002784,1.78e-29,4;UBERON:0000966,8.63e-20,6;UBERON:0005388,8.63e-20,6;UBERON:0001802,8.63e-20,6;UBERON:0001894,2.46e-17,7;UBERON:0006222,2.46e-17,7;UBERON:0000970,7.43e-13,21;UBERON:0002104,7.43e-13,21;UBERON:0000020,2.43e-11,24;UBERON:0001032,2.43e-11,24;UBERON:0004456,2.43e-11,24;UBERON:0003056,8.01e-08,61 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579652024875384,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394061520403854,0.215627574859517,0.256686072559497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,1.02193298195737,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.49119111278236,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.8923715992532,27.9115489441624,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.78892845983597,1.89616334079272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.64910775118144,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p5@GNGT2 | |||
}} |
Latest revision as of 20:00, 15 September 2015
Short description: | p5@GNGT2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_GNGT2_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | -21bp_to_ENST00000503070_5end |
EntrezGene: | GNGT2 |
HGNC: | 4412 |
UniProt: | D6RDH5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 1.13e-57 | 2 |
regional part of epithalamus | 1.13e-57 | 2 |
secretory circumventricular organ | 1.13e-57 | 2 |
circumventricular organ | 1.13e-57 | 2 |
epithalamus | 1.13e-57 | 2 |
gland of diencephalon | 1.78e-29 | 4 |
neuroendocrine gland | 1.78e-29 | 4 |
regional part of diencephalon | 1.78e-29 | 4 |
retina | 8.63e-20 | 6 |
photoreceptor array | 8.63e-20 | 6 |
posterior segment of eyeball | 8.63e-20 | 6 |
diencephalon | 2.46e-17 | 7 |
future diencephalon | 2.46e-17 | 7 |
eye | 7.43e-13 | 21 |
visual system | 7.43e-13 | 21 |
sense organ | 2.43e-11 | 24 |
sensory system | 2.43e-11 | 24 |
entire sense organ system | 2.43e-11 | 24 |
pre-chordal neural plate | 8.01e-08 | 61 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 2.43e-08 | 4 |