FFCP PHASE1:Hg19::chr17:37824259..37824278,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5409 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9160 | |||
|TSSclassifier=strong | |||
|UniProt=A8MT87 | |||
|association_with_transcript=25bp_to_ENST00000394246_5end | |||
|cluster_id=chr17:37824259..37824278,+ | |||
|coexpression_cluster_id=C360 | |||
|description=CAGE_peak_1_at_PNMT_5end | |||
|id=chr17:37824259..37824278,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000349;6.78e-27;19!CL:0002577;1.79e-17;3!CL:0002536;4.38e-12;2!CL:0002575;1.38e-11;2!CL:0002541;2.87e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,5.69e-27,19;CL:0002577,1.79e-17,3;CL:0002536,4.39e-12,2;CL:0002575,1.67e-11,2;CL:0002541,2.87e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0005754;9.66e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.76e-29!115;UBERON:0001049!4.76e-21!57;UBERON:0005068!4.76e-21!57;UBERON:0006241!4.76e-21!57;UBERON:0007135!4.76e-21!57;UBERON:0001017!1.61e-20!82;UBERON:0002616!5.25e-20!59;UBERON:0005743!5.78e-20!86;UBERON:0000073!5.71e-18!94;UBERON:0001016!5.71e-18!94;UBERON:0000955!1.23e-17!69;UBERON:0006238!1.23e-17!69;UBERON:0002780!2.00e-17!41;UBERON:0001890!2.00e-17!41;UBERON:0006240!2.00e-17!41;UBERON:0003080!8.06e-17!42;UBERON:0003075!1.17e-16!86;UBERON:0007284!1.17e-16!86;UBERON:0002346!2.28e-16!90;UBERON:0002020!1.54e-15!34;UBERON:0003528!1.54e-15!34;UBERON:0001893!5.13e-15!34;UBERON:0001869!5.19e-15!32;UBERON:0002791!3.53e-14!33;UBERON:0005631!8.65e-13!14;UBERON:0000158!8.65e-13!14;UBERON:0003056!1.16e-12!61;UBERON:0000924!1.19e-12!173;UBERON:0006601!1.19e-12!173;UBERON:0004121!1.20e-12!169;UBERON:0002619!1.84e-11!22;UBERON:0000153!2.16e-11!129;UBERON:0007811!2.16e-11!129;UBERON:0001950!3.80e-11!20;UBERON:0000033!1.42e-10!123;UBERON:0000956!1.25e-09!25;UBERON:0000203!1.25e-09!25;UBERON:0003124!1.41e-08!7;UBERON:0002420!5.44e-08!9;UBERON:0007245!5.44e-08!9;UBERON:0010009!5.44e-08!9;UBERON:0010011!5.44e-08!9;UBERON:0000454!5.44e-08!9;UBERON:0001871!5.76e-08!7;UBERON:0002308!6.19e-08!9;UBERON:0000125!6.19e-08!9;UBERON:0000478!1.63e-07!24;UBERON:0001987!3.21e-07!4;UBERON:0004340!3.21e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;6.84e-21;24!UBERON:0005631;6.89e-19;10!UBERON:0000158;6.89e-19;10!UBERON:0001987;3.15e-13;4!UBERON:0000305;2.01e-12;7!UBERON:0000125;2.86e-09;9!UBERON:0002308;2.86e-09;9!UBERON:0003124;2.87e-08;3!UBERON:0000920;2.87e-08;3!UBERON:0006947;3.42e-08;3!UBERON:0004054;3.42e-08;3!UBERON:0005383;6.21e-08;3!UBERON:0005382;6.21e-08;3!UBERON:0009663;3.68e-07;7!UBERON:0001894;6.12e-07;7!UBERON:0001000;8.66e-07;1!UBERON:0005352;8.66e-07;1!UBERON:0000998;9.66e-07;1!UBERON:0006868;9.66e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,4.10e-30,14;UBERON:0000158,4.10e-30,14;UBERON:0000478,5.97e-21,24;UBERON:0003124,1.03e-19,7;UBERON:0001987,3.15e-13,4;UBERON:0004340,3.15e-13,4;UBERON:0000305,1.66e-12,7;UBERON:0004871,5.93e-11,8;UBERON:0000125,3.42e-09,9;UBERON:0002308,3.42e-09,9;UBERON:0000920,2.87e-08,3;UBERON:0006947,3.43e-08,3;UBERON:0004054,3.43e-08,3;UBERON:0005383,5.80e-08,3;UBERON:0005382,5.80e-08,3;UBERON:0004175,2.43e-07,25;UBERON:0009663,3.64e-07,7;UBERON:0001894,4.60e-07,7;UBERON:0006222,4.60e-07,7;UBERON:0001000,8.67e-07,1;UBERON:0005352,8.67e-07,1;UBERON:0000998,9.67e-07,1;UBERON:0006868,9.67e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,21.6256958408871,24.7940959534746,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,1.12101712596307,0.790152254325231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.973269740605272,0.0945348171640679,0,0,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0.132529768321485,0.116193942869518,0.207322110030741,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.491953754172454,0,0,0,0,0,0,0,0,0.231860809950154,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414656231081544,0.432359860250884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,45.0375932474898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,2.0694614258501,0,0.184369168541703,0,3.13281851940385,2.05886054286514,0,0,0,49.106666574294,34.9514422972044,75.5975733324201,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.831076008928724,0,0,0,0,0,0,0,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0.438450885253763,0,0,0,0,0,0,0.196498082026242,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0.569647187174163,0,0,0,0,0,0,0,0,0,0,0,0,6.78569862871576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,1.4098700508785,0,0,0,0,0,1.90995587790152,0.593929361665277,3.68592842519078,0.994147647766298,0.703347082052564,0,0,0,0.19924798825107,0,4.28285671352269,0,0,0,0,0,0,0,0,0,0,0.371072392647405,1.99613798001194,0,0,0,0,0,0,0,0,0,0,2.17073589525734,0,0.221158519862449,0.295547618953547,0.658156191461918,0,0,0.153900517007594,0,0,0,0,11.1650405906172,0,10.1276607443541,0,0,1.32969345520125,0.451191321234361,0,0.671286347903371,2.08729105996604,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0.067401132980677,0,1.87411556580271,0,0,0,9.07544126553598,0,0.91821828489147,0.189559738885464,0,0,0,0,0,0,0,0,0.173559738335131,0,0,0.34945333648406,0,0,0,0,0.193978032976839,0,0.225980740780532,0,0,0.316553979779393,0,0.0801588202515337,0,0.19980960958213,0,0,0,0,0,0,0,0,0,0,1.20084057741958,0.547621515567972,0,0,0,1.11712960508902,0,0,0.399358000997982,0.858452096273142,0.446342914883745,0.53746777989381,0,0,0,0,0,1.08270229666224,0,0,0.681017030557878,0.160753148465019,0.687697182986169,0.83088067605837,0,0,0.485996453264197,0,0.315222829196793,0.314727528809989,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,3.97520666736664,0.517131825446202,1.05786081394152,0,0,0.213574825135389,0.471612915298998,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.250381861413,0,0.332787154610557,0.434674820589684,0,0,0,0,0,0,0.434763085832475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0.176689145945881,0,0,0,0,0,0.553033744606923,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15104934173287,0,0,0,0,0,0,0,0,0,0,0,0,0.770750701157514,0,0.159633859057151,0,0.504143392443436,0.207471757392654,0.161475645631851,0,0,0,0,0,0,0,0.198916222116275,0.150420656698515,0,0,0,0,0,0.270150338473579,0,0.206686796501184,0.380494861163441,1.09394961803644,0,0,0.351742488719241,0,0,0,0,1.82129753081038,0.354809480650555,0,0,0.135939465953663,0,0,0.111231401892069,1.96232732126285,2.35673384874003,0,0.913158720509496,0,0,0.142953088353313,0,0,0,0,0,0,0,0.430227358820278,0,0,5.92741870267301,0,0,0,0,0,0,0.647428837187895,0,1.1598144313382,0,0,2.78531085225916,0.237840181555137,0,0.219881033490858,0,0.0771741581079447,0,0,0.245148321753905,0,0,0.297046400327086,0,0,0,0.128915775947154,0,0,0,0,0.730336388246517,0,0,0,0.475940431336403,0.436350690340377,0,0,0,0,0,0.109265571963696,1.26698501011437,0.101988829741982,0,0,0.250707539292375,0,0,1.65833887891756,0.724030971033267,0.213233981900981,0.23806443146374,0,0.0620747142958579,0,0,0,0.217716747896961,0.684466602170562,0,0,0,0.0814032686109745,0,0,0,0,0.122241444182866,0,0.665756774185513,0.201273793591026,0 | |||
|short_description=p1@PNMT | |||
}} |
Latest revision as of 22:27, 19 September 2015
Short description: | p1@PNMT |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PNMT_5end |
Coexpression cluster: | C360_Placental_Amniotic_amniotic_teratocarcinoma_chorionic_neuroblastoma_H9 |
Association with transcript: | 25bp_to_ENST00000394246_5end |
EntrezGene: | PNMT |
HGNC: | 9160 |
UniProt: | A8MT87 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 5.69e-27 | 19 |
placental epithelial cell | 1.79e-17 | 3 |
amniotic epithelial cell | 4.39e-12 | 2 |
central nervous system pericyte | 1.67e-11 | 2 |
chorionic membrane mesenchymal stem cell | 2.87e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 4.10e-30 | 14 |
membranous layer | 4.10e-30 | 14 |
extraembryonic structure | 5.97e-21 | 24 |
chorion | 1.03e-19 | 7 |
placenta | 3.15e-13 | 4 |
allantois | 3.15e-13 | 4 |
amnion | 1.66e-12 | 7 |
somatic layer of lateral plate mesoderm | 5.93e-11 | 8 |
neural nucleus | 3.42e-09 | 9 |
nucleus of brain | 3.42e-09 | 9 |
egg chorion | 2.87e-08 | 3 |
male genital duct | 3.43e-08 | 3 |
internal male genitalia | 3.43e-08 | 3 |
caudate-putamen | 5.80e-08 | 3 |
dorsal striatum | 5.80e-08 | 3 |
internal genitalia | 2.43e-07 | 25 |
telencephalic nucleus | 3.64e-07 | 7 |
diencephalon | 4.60e-07 | 7 |
future diencephalon | 4.60e-07 | 7 |
vas deferens | 8.67e-07 | 1 |
spermatic cord | 8.67e-07 | 1 |
seminal vesicle | 9.67e-07 | 1 |
seminal fluid secreting gland | 9.67e-07 | 1 |