FFCP PHASE1:Hg19::chr17:13505219..13505299,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9955 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5196 | |||
|TSSclassifier=strong | |||
|UniProt=Q9Y663 | |||
|association_with_transcript=0bp_to_ENST00000284110,NM_006042,uc002gob.1_5end | |||
|cluster_id=chr17:13505219..13505299,- | |||
|description=CAGE_peak_1_at_HS3ST3A1_5end | |||
|id=chr17:13505219..13505299,- | |||
|ontology_enrichment_celltype=CL:0000055!8.41e-39!180;CL:0000057!1.29e-20!75;CL:0000680!4.02e-11!57;CL:0000056!4.02e-11!57;CL:0000355!4.02e-11!57;CL:0000393!4.07e-11!60;CL:0000211!4.07e-11!60;CL:0000183!4.49e-11!59;CL:0002620!1.77e-10!23;CL:0000187!3.02e-10!54;CL:0000192!4.75e-08!42;CL:0000514!4.75e-08!42;CL:0000222!1.90e-07!119;CL:0002334!4.73e-07!12;CL:0000133!9.76e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.31e-11;23!CL:0000057;1.45e-10;73!CL:0002334;1.44e-07;12!CL:0002320;3.09e-07;188!CL:0000723;3.52e-07;61!CL:0000393;6.84e-07;61!CL:0000211;6.84e-07;61!CL:0000187;8.90e-07;55!CL:1000449;9.13e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.93e-23,76;CL:0000393,6.22e-12,61;CL:0000211,6.22e-12,61;CL:0000680,6.22e-12,58;CL:0000056,6.22e-12,58;CL:0000355,6.22e-12,58;CL:0002620,1.37e-11,23;CL:0000187,5.57e-11,55;CL:0000222,1.70e-08,121;CL:0000192,1.71e-08,43;CL:0000514,1.71e-08,43;CL:0000048,7.79e-08,427;CL:0002334,1.47e-07,12;CL:0000034,2.73e-07,441;CL:0000723,3.62e-07,433 | |||
|ontology_enrichment_development_v019=CL:0000355;4.84e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!2.79e-16!143;UBERON:0000475!3.13e-15!365;UBERON:0000914!1.09e-14!83;UBERON:0002329!1.09e-14!83;UBERON:0003077!1.09e-14!83;UBERON:0003059!1.09e-14!83;UBERON:0007282!1.09e-14!83;UBERON:0009618!1.09e-14!83;UBERON:0007285!1.09e-14!83;UBERON:0004290!6.39e-14!70;UBERON:0002100!3.19e-12!216;UBERON:0002199!2.45e-10!45;UBERON:0002416!2.45e-10!45;UBERON:0001134!4.95e-10!61;UBERON:0002036!4.95e-10!61;UBERON:0003082!4.95e-10!61;UBERON:0000486!7.83e-10!82;UBERON:0002385!8.52e-10!63;UBERON:0001015!8.52e-10!63;UBERON:0000383!8.52e-10!63;UBERON:0003102!2.05e-09!95;UBERON:0002097!1.40e-08!40;UBERON:0000481!2.21e-08!347;UBERON:0003104!7.46e-08!238;UBERON:0009142!7.46e-08!238;UBERON:0004876!9.72e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;3.91e-07;41!UBERON:0003102;4.15e-07;50!UBERON:0002199;5.40e-07;46!UBERON:0002416;5.40e-07;46!UBERON:0006555;9.13e-07;15!UBERON:0004819;9.13e-07;15!UBERON:0001285;9.13e-07;15!UBERON:0007684;9.13e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,4.94e-17,78;UBERON:0002329,8.47e-15,71;UBERON:0003059,8.47e-15,71;UBERON:0007282,8.47e-15,71;UBERON:0004290,8.47e-15,71;UBERON:0009618,8.47e-15,71;UBERON:0007524,1.47e-14,73;UBERON:0003077,2.88e-14,72;UBERON:0007285,2.88e-14,72;UBERON:0003104,2.60e-13,160;UBERON:0009142,2.60e-13,160;UBERON:0005256,2.49e-12,122;UBERON:0002100,1.37e-11,199;UBERON:0002199,3.71e-11,46;UBERON:0002416,3.71e-11,46;UBERON:0000486,7.77e-11,83;UBERON:0001134,1.35e-10,62;UBERON:0002036,1.35e-10,62;UBERON:0003082,1.35e-10,62;UBERON:0002385,4.57e-10,64;UBERON:0001015,4.57e-10,64;UBERON:0000383,4.57e-10,64;UBERON:0002097,3.02e-09,41;UBERON:0003102,5.99e-08,99 | |||
|phase1_expression=6.7221000330106,10.7050261945492,2.96004248601539,21.0153926541574,8.04529969969118,1.74467704820074,5.06599756336621,45.4838308867318,2.61185628199839,14.2525683170875,6.97801167972428,0.218441372130172,7.12170841216825,1.60896258848061,3.31397375727916,2.01697543935533,3.61616716814386,2.92124036154949,6.8310591830671,10.0959267622966,4.89601658986207,21.6283757819881,20.036519099174,31.3442433416905,14.0607756346179,0.458480434487708,0.328402357799783,0.314843125254717,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,1.2786256184353,2.53007406669196,1.50401373190767,2.75208386025565,4.7717156823066,6.8128881842369,3.87592750372678,11.7516580655159,4.56740885604255,1.96468613246569,0,1.48313777113772,0,0,0,0,0,0,0,3.4409383804245,0,0,0,0,0,0,1.06729878806013,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0.183201743930407,0,0,0,5.4666914686485,2.15271869829786,4.76673050927588,6.3104056564739,8.86670955495893,2.80338800071154,1.06748995729705,5.18001851676036,2.48968828319813,2.69421344139376,1.79808093424805,1.21085942115945,0,14.7622502055292,17.7931243793283,9.12754914471119,31.3842229158782,19.1418232789337,15.8635485480769,19.3822113249103,5.9204709663919,10.1952483368767,6.09622108937016,23.7600571456411,13.5996811103206,21.8438726865126,44.5543247926068,9.09015015351958,8.75829639103749,11.0825646193673,6.58466431321257,3.37136575378922,7.21142682751665,1.81491493056034,15.606898304931,17.298148494304,19.4977349066797,31.8096561849466,28.0302879528554,9.79034052173391,12.2837125178849,37.4683457575611,22.8002592077205,21.4568708107497,18.4099797284599,7.27407255684654,22.0105947360301,15.8180794217395,13.225726200218,0,0,0,2.92736894711029,3.04818467139416,6.39066685782351,4.5610864206763,4.54177531576131,2.55484151353081,7.8224766164908,16.0810234548221,37.2964287651697,7.42988684851167,5.77503585335668,0.828147600278907,1.51726221070292,0.964044119533928,0.55146986366197,1.30727666455444,1.42362371466658,0.539325232640658,0.392442930250692,0.38474715694639,0.738155454624648,7.01208869017229,8.6430542379594,11.7606969108434,0,0,1.77236972004421,0,0,12.0097467208968,0,0,0,0.833296006426766,7.81939932744779,11.4392826380754,5.77325368101093,1.73895607462615,3.75707821554629,0,0,0,9.4824527755113,7.72637545885385,0,0,0,1.87467667973554,0.671928512795438,0,0.447792613514241,3.77824120068151,0.766765358330422,0,0,0,0.144119953416961,0,0.190493682876507,1.52795370223311,0,1.71072446022705,0.822619941626588,0,0,0.784917590417525,0.43596006883328,2.0534720029866,3.49033632546,10.7296933755565,31.276201844572,4.78688609852767,4.16029747645464,9.00225809917497,8.5109479213967,11.1897315186762,5.86209773998405,4.88359444852299,7.40916303102692,35.5052440880171,5.33087923113819,13.4631818398683,6.63166629531089,13.0730018790044,9.89732612702365,0,0,0,0.479249710983165,0,4.27910715122155,5.79125226670317,9.04095819221687,13.4295722429922,0,0,0,0.128343036279748,25.9176516706913,31.2335649258292,6.18631050222156,7.53823194004569,3.18969375826582,0,0,0,3.92612773501248,5.50187573165645,2.17012018959788,2.28767947683888,3.7470087647404,6.15039418632345,9.48845461440977,3.61135319673263,2.27407504055985,4.1389228517002,4.64957918974806,8.48098175291834,12.0768224110635,2.15381273209015,2.05886054286514,0,0,0,0.303127571446259,1.66435439510497,0.907170879989041,13.6459294300327,14.8858114089421,23.5754479323782,5.12556597022804,11.2575594794675,14.9594146663555,4.45254199334973,30.9961484543338,21.6625304882015,21.7636963436594,16.6161417338759,16.1532426059343,0,0.802025881213139,0.184161977871793,8.61108361234551,15.6598404485777,12.3256950061859,9.02399225814824,13.9397760158991,20.3930939985982,20.4594914514565,13.8272633849667,3.4120015221269,1.02056223165909,19.2165165330904,10.7959076883203,19.5081435031574,22.5760398234684,2.03901018436031,6.64860807142979,10.9698629813867,0,0,8.46285412884084,8.20036614249264,9.11059505060049,1.95777922130672,32.9650073346036,40.6771834608499,2.87132768998086,0.650060246036521,8.03419649220798,6.18692597069581,13.2481810718594,17.6529225935049,14.8863498283293,11.386545956037,10.4412019618245,16.7044189735558,5.2528901031575,0,0.384380134730212,0,0,9.761756535243,12.5924938732256,23.6992671854604,0.616067160352178,1.06461206063404,14.7888608652762,2.40921484835096,0.429374660225974,1.86079184679834,2.84741482246853,14.4878947382107,14.3302763134347,11.5543526769159,23.2288370985934,3.13979456079692,15.2891588945818,9.88333307049797,13.0771766603712,2.22400729730648,0,5.89761838734574,40.473600344436,3.65570234446927,11.6215161432431,11.7389923810868,5.65621727814851,14.6910551606316,3.30819206127675,3.98063385144732,1.75380354101505,10.9967351510671,6.55894752046633,1.82619339266434,2.78841148289775,6.76069446077379,3.29846110069318,1.47373561519682,2.14002630888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| |||
|short_description=p1@HS3ST3A1 | |||
}} |
Latest revision as of 16:50, 18 September 2015
Short description: | p1@HS3ST3A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HS3ST3A1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000284110, NM_006042, uc002gob.1_5end |
EntrezGene: | HS3ST3A1 |
HGNC: | 5196 |
UniProt: | Q9Y663 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.93e-23 | 76 |
electrically responsive cell | 6.22e-12 | 61 |
electrically active cell | 6.22e-12 | 61 |
muscle precursor cell | 6.22e-12 | 58 |
myoblast | 6.22e-12 | 58 |
multi-potent skeletal muscle stem cell | 6.22e-12 | 58 |
skin fibroblast | 1.37e-11 | 23 |
muscle cell | 5.57e-11 | 55 |
mesodermal cell | 1.70e-08 | 121 |
smooth muscle cell | 1.71e-08 | 43 |
smooth muscle myoblast | 1.71e-08 | 43 |
multi fate stem cell | 7.79e-08 | 427 |
preadipocyte | 1.47e-07 | 12 |
stem cell | 2.73e-07 | 441 |
somatic stem cell | 3.62e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 4.94e-17 | 78 |
somite | 8.47e-15 | 71 |
presomitic mesoderm | 8.47e-15 | 71 |
presumptive segmental plate | 8.47e-15 | 71 |
dermomyotome | 8.47e-15 | 71 |
trunk paraxial mesoderm | 8.47e-15 | 71 |
dense mesenchyme tissue | 1.47e-14 | 73 |
paraxial mesoderm | 2.88e-14 | 72 |
presumptive paraxial mesoderm | 2.88e-14 | 72 |
mesenchyme | 2.60e-13 | 160 |
entire embryonic mesenchyme | 2.60e-13 | 160 |
trunk mesenchyme | 2.49e-12 | 122 |
trunk | 1.37e-11 | 199 |
integument | 3.71e-11 | 46 |
integumental system | 3.71e-11 | 46 |
multilaminar epithelium | 7.77e-11 | 83 |
skeletal muscle tissue | 1.35e-10 | 62 |
striated muscle tissue | 1.35e-10 | 62 |
myotome | 1.35e-10 | 62 |
muscle tissue | 4.57e-10 | 64 |
musculature | 4.57e-10 | 64 |
musculature of body | 4.57e-10 | 64 |
skin of body | 3.02e-09 | 41 |
surface structure | 5.99e-08 | 99 |