FFCP PHASE1:Hg19::chr12:6937402..6937414,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10536 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19318 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-149bp_to_ENST00000251761_5end | |||
|cluster_id=chr12:6937402..6937414,+ | |||
|coexpression_cluster_id=C3323 | |||
|description=CAGE_peak_4_at_LEPREL2_5end | |||
|id=chr12:6937402..6937414,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.12e-34!180;CL:0000057!3.44e-14!75;CL:0000183!2.71e-13!59;CL:0000680!7.94e-12!57;CL:0000056!7.94e-12!57;CL:0000355!7.94e-12!57;CL:0000187!9.78e-12!54;CL:0000393!9.09e-11!60;CL:0000211!9.09e-11!60;CL:0000192!1.17e-09!42;CL:0000514!1.17e-09!42;CL:0002620!2.97e-09!23;CL:0002321!1.47e-08!248;CL:0000220!3.23e-08!246;CL:0000359!9.02e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.32e-09;23!CL:0000048;2.89e-07;58!CL:0000723;3.63e-07;61!CL:0000192;7.47e-07;43!CL:0000187;8.24e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.10e-13,76;CL:0000187,8.75e-11,55;CL:0002620,3.68e-10,23;CL:0000680,1.07e-09,58;CL:0000056,1.07e-09,58;CL:0000355,1.07e-09,58;CL:0000393,1.76e-09,61;CL:0000211,1.76e-09,61;CL:0000192,1.12e-08,43;CL:0000514,1.12e-08,43 | |||
|ontology_enrichment_development_v019=CL:0000514;7.47e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!5.74e-13!83;UBERON:0002329!5.74e-13!83;UBERON:0003077!5.74e-13!83;UBERON:0003059!5.74e-13!83;UBERON:0007282!5.74e-13!83;UBERON:0009618!5.74e-13!83;UBERON:0007285!5.74e-13!83;UBERON:0004290!9.28e-13!70;UBERON:0000486!1.28e-12!82;UBERON:0001134!4.98e-12!61;UBERON:0002036!4.98e-12!61;UBERON:0003082!4.98e-12!61;UBERON:0002385!5.72e-12!63;UBERON:0001015!5.72e-12!63;UBERON:0000383!5.72e-12!63;UBERON:0005256!2.13e-09!143;UBERON:0004872!2.72e-07!84;UBERON:0002100!7.08e-07!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,5.48e-11,78;UBERON:0000486,1.35e-10,83;UBERON:0007524,1.52e-10,73;UBERON:0002329,2.84e-10,71;UBERON:0003059,2.84e-10,71;UBERON:0007282,2.84e-10,71;UBERON:0004290,2.84e-10,71;UBERON:0009618,2.84e-10,71;UBERON:0001134,3.58e-10,62;UBERON:0002036,3.58e-10,62;UBERON:0003082,3.58e-10,62;UBERON:0003077,5.73e-10,72;UBERON:0007285,5.73e-10,72;UBERON:0002385,1.61e-09,64;UBERON:0001015,1.61e-09,64;UBERON:0000383,1.61e-09,64;UBERON:0002097,2.73e-07,41;UBERON:0002199,2.83e-07,46;UBERON:0002416,2.83e-07,46 | |||
|phase1_expression=0.54503513781167,0.428201047781966,0.422863212287913,0,0.446961094427288,0.872338524100369,0,0,0,0.737201809504527,1.39560233594486,1.09220686065086,0.791300934685361,1.11389717664042,0,1.34465029290355,3.01347264011988,4.38186054232424,0.487932798790507,2.70866327768933,1.63200552995402,1.25381888591235,1.14494394852423,0.821246550437305,0.753255837568817,0,0,0,0,0,0.154816123316076,0.919421224478927,0.6024118375565,0.369754010166788,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,2.43806866313962,0,0.12786256184353,5.42158728576849,2.00535164254356,1.88300474649071,0.795285947051099,0.973269740605272,1.32348744029695,1.77383517970051,1.31752178539689,0.130979075497713,0.364295288292542,0.741568885568859,0,0,0,0,0,0,0.198762407366705,0,1.38856200643038,0,0.419499436209906,0.550236083880135,0,0,0,0,0,0,0,0.735326160691737,0,0.267899184852239,0.898117490504679,0.563057402416611,0,0,0,0,0,0.872188104285069,1.49091585508596,1.13967460498122,1.05927344650575,4.87622255272983,1.06400514659507,0.560677600142307,1.06748995729705,0.49333509683432,0.622422070799533,0.538842688278752,0.817309515567294,1.81628913173918,0,0.937285727335186,1.24864030732128,0,0.896692083310806,1.64408298101271,0.809364721840658,0.98315564691574,1.02077085627447,0.61417158655884,0.103325781175765,0,0.989067717114227,0,4.31170885089743,0.336672227908132,1.00094815897571,1.38532057742091,3.07284334616587,0.919463387397059,0.600952235626387,1.02088964844019,5.56107870635472,1.70845911054854,1.69545520927649,4.80145753735044,2.78241828943785,2.31876486041066,1.48893485065272,5.73839529620305,1.75386609290158,2.27190396819703,1.65689817556139,2.42469085228218,3.90510551768276,2.11579406278045,2.54340888465731,0,0.272746120590835,0,0.853815942907168,1.72288698817931,2.20768491452085,1.7622379352613,1.7662459561294,0,3.12899064659632,1.28648187638577,0,0,1.44375896333917,0,0,0,0.110293972732394,0.217879444092406,0.237270619111097,0,0,0,0.738155454624648,1.40241773803446,1.2347220339942,0,0,0,0,0,0.491953754172454,1.3725424823882,0.219500570817251,0,0.201057944823262,0.555530670951178,0,0,1.44331342025273,0.115930404975077,2.93521735589554,0.144366447761074,1.38895653772983,0.380508304469197,0,0,0,0,0,0,0.839910640994298,0.141775097242386,0,0,0,0,0,0.207328115540772,0,0,0.63497894292169,0.763976851116555,0,0,0.616964956219941,0.901029173531752,0.285826432630578,1.34557301214433,0.87192013766656,1.10007428731425,1.03417372606222,0,1.690605505112,1.06375246633948,0,2.31486636835928,0,0.799266537048298,0.714889968290738,2.17048642156577,1.64648067356154,1.30294473717494,0,0,0.301439377059586,0,0.299918973546171,0,0,0,0.479249710983165,1.14861935834114,1.42636905040718,0.579125226670317,0.410952645100767,0.895304816199478,0,0,0,0,1.01637849688985,0,0,0.167516265334349,0,0,0,0,0.981531933753119,2.50085260529839,0.813795071099207,1.03985430765404,2.85486382075459,2.36553622550902,1.52283839490527,1.50473049863859,2.27407504055985,1.03473071292505,2.65690239414175,2.21243002250044,2.08520674723399,2.93701736194111,4.11772108573027,0,0,0,1.5156378572313,3.32870879020994,1.5119514666484,0.496215615637554,1.99500565274481,0.841980283299221,1.92208723883551,1.53512174720011,0.64341568457443,4.45254199334973,3.23840356985577,1.42049380250502,2.13530605635904,4.67328986265259,3.25389059687886,1.0877350463246,0,0.276242966807689,1.03333003348146,0.910455840033585,0.786746489756545,0.902399225814824,0.308061348417659,0.784349769176855,0,0.527758144464379,0,0.170093705276516,0.215915916102139,1.54227252690289,1.08378575017541,3.01013864312912,0.509752546090077,0.831076008928724,0.447749509444357,0,0,0,0.984043937099117,0.325378394664303,0.103041011647722,0.54941678891006,1.07262349896764,1.14853107599234,0.650060246036521,1.6068392984416,2.22342652071881,1.3864375540318,1.5350367472613,0.689182862422653,1.18162269355101,1.45016693914229,0.767039646744908,1.69160867728801,0,0.384380134730212,0.765676274967505,0.10115778085555,1.39453664789186,5.66662224295152,0.6970372701606,1.23213432070436,0.532306030317022,1.73986598415015,1.11194531462352,1.00187420719394,1.48863347743867,0.632758849437452,0,1.02359116524534,1.28381696410176,1.90921948755562,1.56989728039846,1.2591072030832,0.823611089208164,0.942499218765491,0.606547444719948,0,0.421258456238981,1.46290121726877,1.70599442741899,2.11300293513511,3.8219975194236,3.11091950298168,2.26016233240486,2.2054613741845,0.66343897524122,0,1.15755106853338,0.655894752046633,1.01455188481352,1.54911749049875,2.25356482025793,1.14729081763241,0.88424136911809,0.35667105148125,4.96665489698837,3.16661452946496,1.97576935775941,0.75894634753143,0.699869440489966,0.288666338176536,0.670302275535787,1.08890984861323,0.188287601553558,0.86101074534246,0,0,0.229723400206959,0,0,0,0,0,0,0,0,2.24330549367694,2.88743956579008,2.45040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.970884173996107,0,0.852408440419239,0.95497793895076,0.890894042497916,1.22864280839693,0,0.140669416410513,0.556543525114529,0,2.53350489753592,1.39473591775749,0,0,0.715880777515084,0,0,0,0,0,0.591860433821602,0,2.22273980289274,0,0.278304294485554,0,0,0,0,0.1137934482855,0.254253650292766,0,0.344743373241465,0.583209226766509,1.56262495439963,0,0,0,0.110579259931225,0.886642856860642,0.219385397153973,0.21787692703798,0.139423744278603,1.76985594558733,0,0,0.0897576444097721,0,0.31900115973192,1.37396390102793,2.13213910407454,0,0.156980256395025,0,0,0.19606253431774,0,0,0,0.843992258112108,0.326465616318295,0.282706142867882,0.216388639742091,0,0,3.05515072466813,0,0,0,0,3.21031058919516,0.234264445725339,0,0,0.728341138602278,0.789168805698781,2.41981432097328,0.30607276163049,0.63186579628488,0.751617097072463,0.518440956986236,0,0,0,0,1.42304773014896,0.693373365065693,0.173559738335131,0,0,0.873633341210151,0,0,0,0,0.0969890164884194,4.41280633457501,1.12990370390266,1.09633539717401,0.397429223405979,0,0.391102765469606,0.0801588202515337,1.06726497369676,0.19980960958213,0.144090417154106,0.572682980829578,0.514784993585894,0,0.124252535565433,0.235694034616795,0.271808412147228,0.104602846312333,1.73396969981747,3.46740707881823,0,0,0,0,0,0.837847203816763,0.687481272035051,0,0.399358000997982,0.429226048136571,0,0.403100834920358,4.32359860250884,0,0.393915911536118,0.412079291905832,0.13480708770837,0.0984274815147488,0,0,0,0.643012593860077,0.412618309791701,1.66176135211674,0,0,0.121499113316049,0,0.236417121897595,0.577000469484979,0.316801009558219,0.179287339332845,0.383830394638891,1.42939065274673,0.662091970365432,3.5597595271665,3.80099721227599,1.72844298240254,8.16468400273523,2.39460383124975,0.164185041498678,5.45241669713349,0.566560457600628,0,0,0.129282956361551,0,0.171086837884329,0,0.106787412567695,0.314408610199332,1.24271716604159,0,0,0,0,0,0,0,0,0.314108192500469,0,0,0.250381861413,0,0.221858103073705,0,0.968440444553616,0.249960815924213,0,1.42732666772484,1.17632909849086,0.468334905806882,0,4.17913448083247,3.50569964770837,3.32883516901568,3.21985108967651,5.28292593680408,4.44905610798268,2.05956061557231,1.96600200892211,2.48699520932449,1.18284119991707,1.43367090447332,0.899606224327209,1.55262956876259,1.65882483136342,3.45594228925393,2.60872530905867,3.15540978894159,0.761610424337591,0.406870733204662,2.54588122883583,1.50374779859484,0.928067519756987,0.796191777397232,1.60011105865261,4.46414416737631,3.70424437642511,1.26184898228651,0,0,0,0,0.694567422971502,0.489473409012935,1.07453304648892,0,0.219284049578707,0.530067437837643,0,1.01365464391844,0,1.38172136692479,0,0.138258436151731,0,0,0,0,2.70350199629091,0,0,0,0,1.13503190713367,0.552317850755522,0.419638523158333,0,0.383683113910955,1.40172254815686,0.157265941855896,0.327628914576042,0.509197589862076,0,0.619678821295011,1.67593475391973,6.36008701306837,0,0,3.17408349321616,1.2249819094128,0,0,0,0.41023272848151,0.252071696221718,0.0691572524642179,0,0,0,0.825788063434183,0,0.693153996902029,1.1441462864015,0,3.77940822020922,0.526472298444801,4.0341013740704,0,0,0.655087670040387,0,0,0,0.206686796501184,0.0634158101939068,0,0,0,0.351742488719241,0,0,0,1.21393120847326,0.227662191351298,0.443511850813194,0,0.171488009437418,0,0,0.236387681767936,0.556157009460346,0.156986185701028,0,1.40136081656895,0.913158720509496,0.215927591218621,0,0.571812353413251,1.58013611732727,3.48724276104376,1.56472445072321,0.801711364730253,0.207216164163037,0.17071847709395,0,0,0.118332000730565,0.426067023795788,0,0,0.93061915699296,0,0.111855431797792,0,0,0,0.205325613712494,2.3196288626764,1.94284397223656,0.233939463462106,0.596852325484105,0,0.45178432815584,0,0.301925687133347,0.231522474323834,0.874238242015829,0.940634592723046,0.735444965261716,0.471353094203252,0.588925401344836,0,0,1.86919826156599,0,0.128915775947154,0,0.357107877211315,0.705789743431384,0,2.19100916473955,0,0,1.73548718412503,0.0679914901909147,0.872701380680755,0.5290268405154,2.23197010900051,2.77305377178851,4.32626562123789,0.883164973845552,0.98339014767326,8.74219656978915,0.407955318967927,0.534434810531121,0.459474497674225,0.50141507858475,0.454672189309436,0.535928260312357,0,0,0,1.1903221573187,0,0,2.13050538903166,0.190941474834495,1.61693751166575,0,1.71116650542641,0,0.358611026963382,1.66330178273007,1.22104902916462,3.62872975984233,5.7921684686082,0,2.34640942403454,1.1001729976458,2.44137706989443,0,0.201273793591026,0 | |||
|short_description=p4@LEPREL2 | |||
}} |
Latest revision as of 04:39, 20 September 2015
Short description: | p4@LEPREL2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LEPREL2_5end |
Coexpression cluster: | C3323_Smooth_Fibroblast_leiomyoma_teratocarcinoma_pagetoid_Chondrocyte_mesenchymal |
Association with transcript: | -149bp_to_ENST00000251761_5end |
EntrezGene: | LEPREL2 |
HGNC: | 19318 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.10e-13 | 76 |
muscle cell | 8.75e-11 | 55 |
skin fibroblast | 3.68e-10 | 23 |
muscle precursor cell | 1.07e-09 | 58 |
myoblast | 1.07e-09 | 58 |
multi-potent skeletal muscle stem cell | 1.07e-09 | 58 |
electrically responsive cell | 1.76e-09 | 61 |
electrically active cell | 1.76e-09 | 61 |
smooth muscle cell | 1.12e-08 | 43 |
smooth muscle myoblast | 1.12e-08 | 43 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 5.48e-11 | 78 |
multilaminar epithelium | 1.35e-10 | 83 |
dense mesenchyme tissue | 1.52e-10 | 73 |
somite | 2.84e-10 | 71 |
presomitic mesoderm | 2.84e-10 | 71 |
presumptive segmental plate | 2.84e-10 | 71 |
dermomyotome | 2.84e-10 | 71 |
trunk paraxial mesoderm | 2.84e-10 | 71 |
skeletal muscle tissue | 3.58e-10 | 62 |
striated muscle tissue | 3.58e-10 | 62 |
myotome | 3.58e-10 | 62 |
paraxial mesoderm | 5.73e-10 | 72 |
presumptive paraxial mesoderm | 5.73e-10 | 72 |
muscle tissue | 1.61e-09 | 64 |
musculature | 1.61e-09 | 64 |
musculature of body | 1.61e-09 | 64 |
skin of body | 2.73e-07 | 41 |
integument | 2.83e-07 | 46 |
integumental system | 2.83e-07 | 46 |