FFCP PHASE1:Hg19::chr8:128306934..128306945,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr8:128306934..128306945,-
|short_description=p@chr8:128306934..128306945,-
|description=CAGE_peak_at_chr8:128306934..128306945,-
|association_with_transcript=...") |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr8:128306934..128306945,- | |||
|coexpression_cluster_id=C4726 | |||
|description=CAGE_peak_at_chr8:128306934..128306945,- | |||
|id=chr8:128306934..128306945,- | |||
|ontology_enrichment_celltype=CL:0000066!1.70e-32!254;CL:0002076!2.74e-26!43;CL:0000223!5.21e-21!59;CL:0000220!1.68e-15!246;CL:0002321!3.34e-15!248;CL:0002368!1.93e-11!13;CL:0002149!7.73e-10!6;CL:0002255!7.73e-10!6;CL:0000548!1.34e-09!679;CL:0000004!1.34e-09!679;CL:0000255!1.34e-09!679;CL:0000012!2.14e-09!682;CL:0000076!7.59e-09!62;CL:0002251!8.78e-09!21;CL:0002202!1.93e-07!9;CL:0002632!1.93e-07!9;CL:0000003!7.46e-07!722 | |||
|ontology_enrichment_celltype_v019=CL:0002149;1.12e-10;6!CL:0002255;1.12e-10;6!CL:0002328;1.12e-09;3!CL:0002076;6.38e-08;42!CL:0000083;6.75e-08;4!CL:0002336;7.09e-08;1!CL:0002261;7.09e-08;1!CL:0002170;7.09e-08;1!CL:0002327;1.81e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.17e-16,253;CL:0000223,5.77e-12,58;CL:0002076,2.14e-11,42;CL:0002149,7.39e-11,6;CL:0002255,7.39e-11,6;CL:0002328,1.12e-09,3;CL:0000083,7.36e-08,4;CL:0002336,9.94e-08,1;CL:0002261,9.94e-08,1;CL:0002170,9.94e-08,1;CL:0002327,2.00e-07,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!2.79e-19!106;DOID:1749!2.15e-14!14;DOID:0050687!4.12e-12!143;DOID:299!5.45e-11!25;DOID:3001!7.73e-10!6 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.97e-17;14!DOID:299;7.10e-16;25!DOID:4074;6.21e-15;2!DOID:4905;6.21e-15;2!DOID:3498;6.21e-15;2!DOID:3493;4.61e-14;2!DOID:3001;1.12e-10;6!DOID:1793;6.75e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.95e-17,14;DOID:305,3.99e-17,106;DOID:299,6.62e-16,25;DOID:4074,7.40e-15,2;DOID:4905,7.40e-15,2;DOID:3498,7.40e-15,2;DOID:3493,6.45e-14,2;DOID:0050687,9.20e-12,143;DOID:3001,7.39e-11,6;DOID:1793,7.36e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0000065!3.47e-14!53;UBERON:0001004!9.83e-14!72;UBERON:0000072!2.24e-12!46;UBERON:0004119!1.68e-11!169;UBERON:0000925!1.68e-11!169;UBERON:0006595!1.68e-11!169;UBERON:0008947!5.08e-11!38;UBERON:0003258!5.08e-11!38;UBERON:0007196!1.71e-10!14;UBERON:0001558!1.71e-10!14;UBERON:0001007!9.19e-09!155;UBERON:0001555!9.19e-09!155;UBERON:0007026!9.19e-09!155;UBERON:0003104!3.46e-08!238;UBERON:0009142!3.46e-08!238;UBERON:0001041!8.76e-08!98;UBERON:0000077!1.23e-07!130;UBERON:0004921!1.33e-07!129;UBERON:0004185!1.33e-07!129;UBERON:0000481!3.45e-07!347;UBERON:0005178!7.45e-07!34;UBERON:0002224!7.45e-07!34;UBERON:0001737!7.78e-07!9;UBERON:0005153!9.57e-07!37 | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;1.12e-09;3!UBERON:0002031;1.12e-09;3!UBERON:0004913;7.09e-08;1!UBERON:0003703;7.09e-08;1!UBERON:0001174;7.09e-08;1!UBERON:0004914;7.09e-08;1!UBERON:0002394;1.22e-07;4!UBERON:0003928;1.22e-07;4!UBERON:0001911;1.81e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,1.12e-09,3;UBERON:0002031,1.12e-09,3;UBERON:0004913,1.21e-07,1;UBERON:0003703,1.21e-07,1;UBERON:0001174,1.21e-07,1;UBERON:0004914,1.21e-07,1;UBERON:0001911,2.00e-07,4;UBERON:0005333,2.00e-07,4;UBERON:0008425,2.00e-07,4;UBERON:0005311,2.00e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,2.09340350391728,0,0,0,0,0.672325146451775,0,0,0,0.123121058076788,0,0,0.286235987131057,0.410623275218653,0.125542639594803,0,0,0,0,0,0,1.83884244895785,0,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0.417989933073621,0.258416759169329,0,0,0.805658634218294,0,0.24406205754817,0.367663080345869,0,0.0892997282840798,0,0.337834441449967,0,0,0,0,0,0.436094052142534,0,0,0.397227542439656,0,0,0,0,0,0,0.134710672069688,0.490385709340376,0,0,0,0.312160076830321,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340296549480063,0,0,0,0,0.103052529238439,0.257640540045629,0,0.168776332241266,0,0,0,0,0,0,0,0.386521706326594,0.272746120590835,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0.236613600079688,0.505754070234305,0.241011029883482,0.772057809126758,0.435758888184812,0.237270619111097,0.943819157121151,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0.329250856225877,1.1240175325762,0.703702806881416,1.11106134190236,0,0,0,0,0,0.288732895522148,0,0,0,0,0,0,0,0,0.671928512795438,0.141775097242386,1.16426079513703,0.871901815541886,1.15014803749563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22001485746285,0,0,0,0,0,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0.479249710983165,0,0,0.289562613335158,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271265023699736,0,0,0,0,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0.348631135379878,0,0.40101294060657,0.0920809889358963,0.114814448164607,0,0,0.451199612907412,0.385076685522074,0,0,0,0,0,0.215915916102139,1.54227252690289,0,0,0.509752546090077,0,0,0,0,0.512900250232778,0.328014645699706,0,0,0,0,0,0,0,0,0,0,0.275673144969061,0,0.290033387828457,0.0852266274161009,0.0890320356467374,0.165284915360978,0.576570202095319,1.14851441245126,0.10115778085555,0.464845549297286,0,0,0,0,0,0,0.286249773483982,0.372158369359667,0,0,0.255897791311334,0,0.318203247925937,0.78494864019923,0,0,0,0.202182481573316,3.17020642346017,0,0,0.731140468893853,0,0,0,0,0,0,0,0.578775534266688,0,0,0,0,0,0,0,0,0,0,0,0,0.288666338176536,0.670302275535787,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,2.20536194382929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.568272293612826,0.47748896947538,0,0,0,0,0,0,2.74463030566391,0,0,0,0,0,0,2.78591888556713,0,0,0,0,0,0,0,0,0,0,0,0,0.508507300585533,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.93819054686466,0,0,0,0,0,0,0,0,0,0,0,0,3.13063390291344,2.18502341580683,0,0,0,0,0,0,0,0,0,1.19472429772959,0.853828638089378,0.970722711091971,1.73559738335131,0.587954384486266,2.08942095792966,0,0.343972064943233,0,0,0,0,0,0,0,0,0,0,0.64127056201227,0,0,0.432271251462318,0,0,1.7286575758578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670869375198532,0,0,0.211200673038813,0,0.575745591958336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40963004463334,0,0,0,0,0,0,3.19170628885091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0,0,0.554805861502613,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0,0,0,0.761610424337591,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303859956177382,0,0,0,0,0,0,0.422624246717254,0,0,0,0,0,0.559518030877778,1.86623178009892,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,0.825788063434183,0,4.96760364446454,0,0,0,0,0,0,0,0.49131575253029,1.03499260351932,0,0,0,0,0,0,0,0,0.511049710558381,0,0,0,0,0,0,0,0,0,0.118193840883968,0.222462803784138,0,0,0,0,0,0,0,0,0,0,0,0.414432328326074,0,0,0,0.118332000730565,0,0,4.1239236337929,0.31020638566432,1.91107787795487,0.447421727191169,1.07965256976767,1.46301509978723,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535661815816973,3.17605384544123,0.240724100067505,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0.215166616178029,0.665320713092027,0.732629417498771,0.320182037633146,0,0.988077223172456,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,2.09340350391728,0,0,0,0,0.672325146451775,0,0,0,0.123121058076788,0,0,0.286235987131057,0.410623275218653,0.125542639594803,0,0,0,0,0,0,1.83884244895785,0,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0.417989933073621,0.258416759169329,0,0,0.805658634218294,0,0.24406205754817,0.367663080345869,0,0.0892997282840798,0,0.337834441449967,0,0,0,0,0,0.436094052142534,0,0,0.397227542439656,0,0,0,0,0,0,0.134710672069688,0.490385709340376,0,0,0,0.312160076830321,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340296549480063,0,0,0,0,0.103052529238439,0.257640540045629,0,0.168776332241266,0,0,0,0,0,0,0,0.386521706326594,0.272746120590835,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0.236613600079688,0.505754070234305,0.241011029883482,0.772057809126758,0.435758888184812,0.237270619111097,0.943819157121151,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0.329250856225877,1.1240175325762,0.703702806881416,1.11106134190236,0,0,0,0,0,0.288732895522148,0,0,0,0,0,0,0,0,0.671928512795438,0.141775097242386,1.16426079513703,0.871901815541886,1.15014803749563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22001485746285,0,0,0,0,0,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0.479249710983165,0,0,0.289562613335158,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271265023699736,0,0,0,0,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0.348631135379878,0,0.40101294060657,0.0920809889358963,0.114814448164607,0,0,0.451199612907412,0.385076685522074,0,0,0,0,0,0.215915916102139,1.54227252690289,0,0,0.509752546090077,0,0,0,0,0.512900250232778,0.328014645699706,0,0,0,0,0,0,0,0,0,0,0.275673144969061,0,0.290033387828457,0.0852266274161009,0.0890320356467374,0.165284915360978,0.576570202095319,1.14851441245126,0.10115778085555,0.464845549297286,0,0,0,0,0,0,0.286249773483982,0.372158369359667,0,0,0.255897791311334,0,0.318203247925937,0.78494864019923,0,0,0,0.202182481573316,3.17020642346017,0,0,0.731140468893853,0,0,0,0,0,0,0,0.578775534266688,0,0,0,0,0,0,0,0,0,0,0,0,0.288666338176536,0.670302275535787,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,2.20536194382929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.568272293612826,0.47748896947538,0,0,0,0,0,0,2.74463030566391,0,0,0,0,0,0,2.78591888556713,0,0,0,0,0,0,0,0,0,0,0,0,0.508507300585533,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.93819054686466,0,0,0,0,0,0,0,0,0,0,0,0,3.13063390291344,2.18502341580683,0,0,0,0,0,0,0,0,0,1.19472429772959,0.853828638089378,0.970722711091971,1.73559738335131,0.587954384486266,2.08942095792966,0,0.343972064943233,0,0,0,0,0,0,0,0,0,0,0.64127056201227,0,0,0.432271251462318,0,0,1.7286575758578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670869375198532,0,0,0.211200673038813,0,0.575745591958336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40963004463334,0,0,0,0,0,0,3.19170628885091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0,0,0.554805861502613,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0,0,0,0.761610424337591,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303859956177382,0,0,0,0,0,0,0.422624246717254,0,0,0,0,0,0.559518030877778,1.86623178009892,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,0.825788063434183,0,4.96760364446454,0,0,0,0,0,0,0,0.49131575253029,1.03499260351932,0,0,0,0,0,0,0,0,0.511049710558381,0,0,0,0,0,0,0,0,0,0.118193840883968,0.222462803784138,0,0,0,0,0,0,0,0,0,0,0,0.414432328326074,0,0,0,0.118332000730565,0,0,4.1239236337929,0.31020638566432,1.91107787795487,0.447421727191169,1.07965256976767,1.46301509978723,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535661815816973,3.17605384544123,0.240724100067505,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0.215166616178029,0.665320713092027,0.732629417498771,0.320182037633146,0,0.988077223172456,0,0,0,0,0,0 | ||
|short_description=p@chr8:128306934..128306945,- | |||
}} | }} |
Latest revision as of 14:53, 31 July 2015
Short description: | p@chr8:128306934..128306945, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr8:128306934..128306945, - |
Coexpression cluster: | C4726_clear_oral_giant_anaplastic_ductal_squamous_serous |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.17e-16 | 253 |
endodermal cell | 5.77e-12 | 58 |
endo-epithelial cell | 2.14e-11 | 42 |
epithelial cell of uterus | 7.39e-11 | 6 |
stromal cell of endometrium | 7.39e-11 | 6 |
bronchial epithelial cell | 1.12e-09 | 3 |
epithelial cell of pancreas | 7.36e-08 | 4 |
buccal mucosa cell | 9.94e-08 | 1 |
endothelial cell of viscerocranial mucosa | 9.94e-08 | 1 |
keratinized cell of the oral mucosa | 9.94e-08 | 1 |
mammary gland epithelial cell | 2.00e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 1.12e-09 | 3 |
epithelium of bronchus | 1.12e-09 | 3 |
hepatopancreatic ampulla | 1.21e-07 | 1 |
extrahepatic bile duct | 1.21e-07 | 1 |
common bile duct | 1.21e-07 | 1 |
duodenal papilla | 1.21e-07 | 1 |
mammary gland | 2.00e-07 | 4 |
mammary bud | 2.00e-07 | 4 |
mammary ridge | 2.00e-07 | 4 |
mammary placode | 2.00e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.95e-17 | 14 |
carcinoma | 3.99e-17 | 106 |
adenocarcinoma | 6.62e-16 | 25 |
pancreas adenocarcinoma | 7.40e-15 | 2 |
pancreatic carcinoma | 7.40e-15 | 2 |
pancreatic ductal adenocarcinoma | 7.40e-15 | 2 |
signet ring cell adenocarcinoma | 6.45e-14 | 2 |
cell type cancer | 9.20e-12 | 143 |
female reproductive endometrioid cancer | 7.39e-11 | 6 |
pancreatic cancer | 7.36e-08 | 4 |