FFCP PHASE1:Hg19::chr11:5646267..5646283,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=53840 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10063 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=32bp_to_uc001mbi.2,uc009yeq.2_5end | |||
|cluster_id=chr11:5646267..5646283,+ | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_3_at_TRIM34_5end | |||
|id=chr11:5646267..5646283,+ | |||
|ontology_enrichment_celltype=CL:0002087!1.16e-28!119;CL:0000738!1.29e-27!140;CL:0002031!7.66e-26!124;CL:0002057!2.15e-23!42;CL:0000860!2.53e-21!45;CL:0000037!1.12e-20!172;CL:0000566!1.12e-20!172;CL:0002032!3.33e-20!165;CL:0000837!3.33e-20!165;CL:0000988!1.07e-18!182;CL:0000766!1.13e-16!76;CL:0002194!2.14e-15!63;CL:0000576!2.14e-15!63;CL:0000040!2.14e-15!63;CL:0000559!2.14e-15!63;CL:0002009!1.08e-14!65;CL:0000839!1.97e-14!70;CL:0000557!4.03e-14!71;CL:0000838!3.90e-12!52;CL:0000542!8.55e-12!53;CL:0000051!8.55e-12!53;CL:0000134!2.77e-10!358;CL:0002320!9.43e-10!365;CL:0000034!1.48e-09!444;CL:0000763!1.80e-09!112;CL:0000049!1.80e-09!112;CL:0000723!1.63e-08!436;CL:0000048!1.95e-08!430;CL:0000219!2.34e-08!390 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.39e-70;33!CL:0002057;6.39e-70;33!CL:0000473;7.80e-47;39!CL:0000234;7.80e-47;39!CL:0000576;1.17e-32;48!CL:0000766;3.18e-24;69!CL:0000763;4.53e-14;100!CL:0002087;1.09e-11;104!CL:0000775;1.39e-10;3!CL:0000094;8.67e-09;8!CL:0000738;4.99e-08;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,6.38e-61,42;CL:0002057,6.38e-61,42;CL:0000473,6.95e-53,48;CL:0000234,6.95e-53,48;CL:0000766,4.26e-50,72;CL:0002194,1.26e-41,59;CL:0000576,1.26e-41,59;CL:0000040,1.26e-41,59;CL:0000559,1.26e-41,59;CL:0000839,5.17e-41,66;CL:0000557,2.34e-40,67;CL:0002009,3.59e-40,61;CL:0000763,2.87e-32,108;CL:0000049,2.87e-32,108;CL:0000738,2.80e-27,136;CL:0002031,2.00e-23,120;CL:0002032,1.93e-22,161;CL:0000837,1.93e-22,161;CL:0002087,3.81e-22,115;CL:0000037,2.42e-21,168;CL:0000988,4.68e-20,177;CL:0000134,5.00e-11,354;CL:0002320,9.96e-11,361;CL:0000775,1.26e-10,3;CL:0000219,1.13e-09,386;CL:0000094,7.67e-09,8;CL:0000048,2.22e-08,427;CL:0000723,3.36e-08,433;CL:0000034,5.71e-08,441 | |||
|ontology_enrichment_development_v019=CL:0002057;1.44e-41;42!CL:0000049;4.80e-10;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!5.84e-17!102;UBERON:0003061!5.84e-17!102;UBERON:0002193!1.40e-15!112;UBERON:0002371!1.08e-12!80;UBERON:0001474!2.84e-11!86;UBERON:0004765!2.99e-09!101;UBERON:0001434!2.99e-09!101;UBERON:0002384!4.94e-09!375;UBERON:0002405!1.25e-08!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.20e-35,76;UBERON:0001474,2.05e-32,82;UBERON:0004765,3.01e-29,90;UBERON:0002405,3.38e-28,93;UBERON:0002390,1.37e-26,98;UBERON:0003061,1.37e-26,98;UBERON:0001434,5.44e-26,100;UBERON:0002193,8.15e-24,108;UBERON:0002204,3.76e-14,167;UBERON:0003081,5.42e-11,203;UBERON:0002384,2.55e-10,371 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382067028739756,0.738905305049512,0.157421562627358,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0.223915474239924,0.32389366601898,0,0.145398238779565,0,0,0.232429036905685,0,0.309706370895104,5.46615545412086,3.58624989140741,4.96612682766029,2.06847408441971,0,0,0,0,0,11.9372718024652,3.20929027076094,4.47535988059329,2.30895910130701,2.39356389145958,2.13112375266347,13.930043454172,1.70215567407342,3.11411124497787,5.02497330513487,2.60741459210101,5.42972111762792,13.3187890579341,3.68277635987565,9.81033401066742,0.211255286311942,0,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0.954053754535364,0.569212969109448,1.17447437874188,0.764546456250458,0,0.560508562981536,0.526768169550154,0.786839080455332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0.950452044448374,0.602300476311091,0.127986611154418,0,0,0,0.201606743224732,0.267440195783507,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0,0.22452937262617,0,0,0,0,0,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18800285728205,0.247266929278557,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0.103052529238439,0.257640540045629,0.18611685633159,0,0,0,0,0,0,0.10075209822764,0,0,0,0,0,0,0,0.10366105501537,0,0,1.56449532329816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,1.47798971368783,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.57656445851882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0.394061520403854,0.646882724578552,0.256686072559497,0,0,0,0,0,1.49801404789436,0,2.48649308061621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0,0.519254429183621,0,0,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0.31481234683064,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0.551365343546124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0.764637207142375,0,0.238231775457789,0,0.648473311192717,0,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222886768554957,0,0.23874448473769,0,0,0,0,0,0,0,0.19924798825107,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0.0979923974143777,0,0,0,0,0,0,0,0,0,0,0,0,0.391102765469606,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.326587360109409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233713309847224,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244736704506468,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.172214979660816,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.186224142887574,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320568492303233 | |||
|short_description=p3@TRIM34 | |||
}} |
Latest revision as of 08:21, 18 September 2015
Short description: | p3@TRIM34 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TRIM34_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 32bp_to_uc001mbi.2, uc009yeq.2_5end |
EntrezGene: | TRIM34 |
HGNC: | 10063 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 6.38e-61 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.38e-61 | 42 |
defensive cell | 6.95e-53 | 48 |
phagocyte | 6.95e-53 | 48 |
myeloid leukocyte | 4.26e-50 | 72 |
monopoietic cell | 1.26e-41 | 59 |
monocyte | 1.26e-41 | 59 |
monoblast | 1.26e-41 | 59 |
promonocyte | 1.26e-41 | 59 |
myeloid lineage restricted progenitor cell | 5.17e-41 | 66 |
granulocyte monocyte progenitor cell | 2.34e-40 | 67 |
macrophage dendritic cell progenitor | 3.59e-40 | 61 |
myeloid cell | 2.87e-32 | 108 |
common myeloid progenitor | 2.87e-32 | 108 |
leukocyte | 2.80e-27 | 136 |
hematopoietic lineage restricted progenitor cell | 2.00e-23 | 120 |
hematopoietic oligopotent progenitor cell | 1.93e-22 | 161 |
hematopoietic multipotent progenitor cell | 1.93e-22 | 161 |
nongranular leukocyte | 3.81e-22 | 115 |
hematopoietic stem cell | 2.42e-21 | 168 |
hematopoietic cell | 4.68e-20 | 177 |
mesenchymal cell | 5.00e-11 | 354 |
connective tissue cell | 9.96e-11 | 361 |
neutrophil | 1.26e-10 | 3 |
motile cell | 1.13e-09 | 386 |
granulocyte | 7.67e-09 | 8 |
multi fate stem cell | 2.22e-08 | 427 |
somatic stem cell | 3.36e-08 | 433 |
stem cell | 5.71e-08 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.20e-35 | 76 |
bone element | 2.05e-32 | 82 |
skeletal element | 3.01e-29 | 90 |
immune system | 3.38e-28 | 93 |
hematopoietic system | 1.37e-26 | 98 |
blood island | 1.37e-26 | 98 |
skeletal system | 5.44e-26 | 100 |
hemolymphoid system | 8.15e-24 | 108 |
musculoskeletal system | 3.76e-14 | 167 |
lateral plate mesoderm | 5.42e-11 | 203 |
connective tissue | 2.55e-10 | 371 |