FFCP PHASE1:Hg19::chr11:12399071..12399185,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55742 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14652 | |||
|TSSclassifier=strong | |||
|UniProt=F5H1R9,Q9NVD7 | |||
|association_with_transcript=0bp_to_ENST00000530755,ENST00000539723,ENST00000550549,uc001mkh.2,uc001mki.2_5end | |||
|cluster_id=chr11:12399071..12399185,+ | |||
|coexpression_cluster_id=C3110 | |||
|description=CAGE_peak_1_at_PARVA_5end | |||
|id=chr11:12399071..12399185,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.55e-36!180;CL:0000222!1.10e-21!119;CL:0000057!7.64e-19!75;CL:0000680!6.96e-17!57;CL:0000056!6.96e-17!57;CL:0000355!6.96e-17!57;CL:0000183!1.55e-16!59;CL:0000187!2.80e-16!54;CL:0000220!1.47e-15!246;CL:0002321!4.18e-15!248;CL:0000192!3.01e-14!42;CL:0000514!3.01e-14!42;CL:0000393!4.35e-13!60;CL:0000211!4.35e-13!60;CL:0000359!1.76e-11!32;CL:0000136!1.01e-09!15;CL:0002620!1.50e-07!23;CL:0000325!3.03e-07!39 | |||
|ontology_enrichment_celltype_v019=CL:0000359;7.23e-11;32!CL:0000192;2.25e-10;43!CL:0000187;2.48e-09;55!CL:0000136;8.15e-09;13!CL:0000057;2.10e-08;73!CL:0002620;1.43e-07;23!CL:0000393;2.76e-07;61!CL:0000211;2.76e-07;61!CL:0002320;7.68e-07;188 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,3.94e-22,121;CL:0000057,1.55e-19,76;CL:0000680,3.60e-17,58;CL:0000056,3.60e-17,58;CL:0000355,3.60e-17,58;CL:0000187,1.46e-16,55;CL:0002321,1.45e-15,250;CL:0000192,1.63e-14,43;CL:0000514,1.63e-14,43;CL:0000393,2.33e-13,61;CL:0000211,2.33e-13,61;CL:0000359,1.60e-11,32;CL:0000136,9.35e-10,15;CL:0002620,1.42e-07,23 | |||
|ontology_enrichment_development_v019=CL:0000514;2.25e-10;43!CL:0000355;2.14e-09;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!5.60e-21!143;UBERON:0002049!4.43e-20!79;UBERON:0007798!4.43e-20!79;UBERON:0000914!3.59e-19!83;UBERON:0002329!3.59e-19!83;UBERON:0003077!3.59e-19!83;UBERON:0003059!3.59e-19!83;UBERON:0007282!3.59e-19!83;UBERON:0009618!3.59e-19!83;UBERON:0007285!3.59e-19!83;UBERON:0004872!6.66e-19!84;UBERON:0000475!6.87e-19!365;UBERON:0002100!8.13e-19!216;UBERON:0003914!1.58e-17!118;UBERON:0004290!2.06e-17!70;UBERON:0000055!1.76e-16!69;UBERON:0002385!2.37e-16!63;UBERON:0001015!2.37e-16!63;UBERON:0000383!2.37e-16!63;UBERON:0001981!3.06e-16!60;UBERON:0007500!3.06e-16!60;UBERON:0004537!3.06e-16!60;UBERON:0006965!3.06e-16!60;UBERON:0000486!5.06e-16!82;UBERON:0001134!6.21e-16!61;UBERON:0002036!6.21e-16!61;UBERON:0003082!6.21e-16!61;UBERON:0000490!1.01e-15!138;UBERON:0000481!1.08e-14!347;UBERON:0001009!1.93e-14!113;UBERON:0003104!4.26e-14!238;UBERON:0009142!4.26e-14!238;UBERON:0004535!5.85e-14!110;UBERON:0000119!2.48e-13!312;UBERON:0000483!9.02e-13!309;UBERON:0001637!1.28e-12!42;UBERON:0003509!1.28e-12!42;UBERON:0004572!1.28e-12!42;UBERON:0000468!4.24e-12!659;UBERON:0000477!7.16e-12!286;UBERON:0003102!5.53e-10!95;UBERON:0004573!7.01e-10!33;UBERON:0004571!7.01e-10!33;UBERON:0004111!1.07e-09!241;UBERON:0000467!2.70e-09!625;UBERON:0000480!4.86e-09!626;UBERON:0002199!3.05e-08!45;UBERON:0002416!3.05e-08!45;UBERON:0007100!2.41e-07!27;UBERON:0000948!6.02e-07!24;UBERON:0005498!6.02e-07!24;UBERON:0004140!6.02e-07!24;UBERON:0009881!6.02e-07!24;UBERON:0004141!6.02e-07!24;UBERON:0003084!6.02e-07!24;UBERON:0007005!6.02e-07!24;UBERON:0004139!6.02e-07!24;UBERON:0004291!6.02e-07!24;UBERON:0000025!7.12e-07!194;UBERON:0002097!8.98e-07!40;UBERON:0000947!9.07e-07!21;UBERON:0010191!9.07e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;3.23e-09;42!UBERON:0003509;3.23e-09;42!UBERON:0004572;3.23e-09;42!UBERON:0004573;4.11e-09;33!UBERON:0004571;4.11e-09;33!UBERON:0007500;1.27e-08;56!UBERON:0001981;1.27e-08;56!UBERON:0004537;1.27e-08;56!UBERON:0002049;7.52e-08;75!UBERON:0007798;7.52e-08;75!UBERON:0000055;1.63e-07;65!UBERON:0002384;2.42e-07;198!UBERON:0007100;5.94e-07;25!UBERON:0000947;8.25e-07;21!UBERON:0010191;8.25e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,1.45e-20,160;UBERON:0009142,1.45e-20,160;UBERON:0002049,1.46e-19,78;UBERON:0007798,1.46e-19,78;UBERON:0005256,7.91e-19,122;UBERON:0004872,1.99e-18,83;UBERON:0007503,6.22e-18,78;UBERON:0007524,7.45e-18,73;UBERON:0002329,1.04e-17,71;UBERON:0003059,1.04e-17,71;UBERON:0007282,1.04e-17,71;UBERON:0004290,1.04e-17,71;UBERON:0009618,1.04e-17,71;UBERON:0000490,1.16e-17,148;UBERON:0003077,2.09e-17,72;UBERON:0007285,2.09e-17,72;UBERON:0003914,2.33e-17,117;UBERON:0002100,4.50e-17,199;UBERON:0002385,1.22e-16,64;UBERON:0001015,1.22e-16,64;UBERON:0000383,1.22e-16,64;UBERON:0000486,2.59e-16,83;UBERON:0001134,3.21e-16,62;UBERON:0002036,3.21e-16,62;UBERON:0003082,3.21e-16,62;UBERON:0000055,5.36e-16,68;UBERON:0007500,1.03e-15,59;UBERON:0001981,1.03e-15,59;UBERON:0004537,1.03e-15,59;UBERON:0006965,1.03e-15,59;UBERON:0001009,9.63e-14,112;UBERON:0004535,2.90e-13,109;UBERON:0000119,3.11e-13,309;UBERON:0000483,1.13e-12,306;UBERON:0001637,1.15e-12,42;UBERON:0003509,1.15e-12,42;UBERON:0004572,1.15e-12,42;UBERON:0003102,2.22e-10,99;UBERON:0004573,6.48e-10,33;UBERON:0004571,6.48e-10,33;UBERON:0004111,1.50e-09,240;UBERON:0002199,1.73e-08,46;UBERON:0002416,1.73e-08,46;UBERON:0007100,2.28e-07,27;UBERON:0002097,5.22e-07,41;UBERON:0000948,5.73e-07,24;UBERON:0005498,5.73e-07,24;UBERON:0004140,5.73e-07,24;UBERON:0009881,5.73e-07,24;UBERON:0004141,5.73e-07,24;UBERON:0003084,5.73e-07,24;UBERON:0007005,5.73e-07,24;UBERON:0004139,5.73e-07,24;UBERON:0004291,5.73e-07,24;UBERON:0000947,8.63e-07,21;UBERON:0010191,8.63e-07,21 | |||
|phase1_expression=225.28119029549,193.975074645231,252.026474523596,245.17958096517,204.261220153271,193.659152350282,159.578923246036,115.60473683711,178.12859843229,52.0955945383199,58.6152981096839,69.6827977095249,71.4808510999109,79.70553130627,87.4889071921698,124.380152093578,132.592796165275,143.140777715925,150.283302027476,86.6772248860587,107.712364976966,95.6036900508168,62.9719171688325,56.8028864052469,56.8708157364457,0,0,0.0787107813136792,0,0,3.2511385896376,37.696270203636,57.831536405424,55.8328555351849,0,0,0,2.76997704265939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.1079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0.393419540227666,0.786021525498329,0,0,0.32592226663359,0,1.94826728407911,0,0,0,0.270803863765016,0,0.130059347559878,0,0,0,0.296573126324121,0,0,0.226618685395132,1.53288197440768,1.03088233644789,2.02415753615602,0.318565414324097,1.30216690771284,0,0.752875595388864,0.639933055772092,2.49861453104692,0.236777252044017,0,1.00803371612366,0.267440195783507,0.144824403882799,277.939827597916,110.6656418511,205.986587129927,119.636359439291,183.991013203371,172.077664525459,103.387173116643,134.79785907383,108.52597010435,108.869134154119,101.537012261254,59.1370525872173,57.9229508385142,43.3817798057782,0,0.522389211897802,0.132957960518865,0,0,0,101.170065349653,98.9269784372043,113.514944025683,149.241296667939,110.747851159415,105.095092021106,104.497483268405,78.558694787476,67.9513561731617,83.3454325784029,99.4988413259593,66.1436731975106,147.657544816643,72.797289908482,119.090866338619,86.9779353486937,92.0570427767296,100.67466355209,131.85230822066,108.216285190767,83.5399952322657,0,0,58.4366029870996,226.12223802137,137.900627202727,121.286809624908,88.0588425698858,107.464519806102,132.880591233727,136.638714534022,150.713872082885,122.305936912108,99.4164759874298,97.7502180618483,146.513989960294,111.77812934912,81.0752154144936,90.2142622039626,99.2620969487342,94.6010147892901,56.1336903517196,73.814062631868,71.9108130315512,103.710318997486,66.3305313483547,96.919582742868,171.072411448616,207.704220593988,155.637592891403,171.749735894081,62.2843621630045,64.1858006943176,110.825646193673,204.12459370959,184.199165275211,202.821379523906,106.05909125462,137.053681666291,263.316260413294,184.380754008819,96.9294240352619,195.284542906842,170.815678050252,231.157135563835,95.0210750518329,188.443167981758,137.576406963042,224.325602991283,163.909101614275,138.808750673996,217.624532171703,164.982456318104,73.0526024957262,69.8230068712537,76.576826968864,14.8807921478106,13.120447063827,17.3128974875582,25.5006195337811,16.6531761577915,5.83963774521328,154.885037006518,241.215351822332,180.95674697175,149.526472826297,110.447560695447,57.2604912192844,56.1387017960079,57.3606251122687,51.6175792387604,52.9447049144547,46.2677707266638,54.2021858803861,53.5684599792195,53.4798548155483,109.247007284448,130.424849637205,186.854601144456,177.880540776506,26.6185573125845,16.7080626835196,50.2171420679193,0,26.6884911638556,113.063186986728,72.6546889405101,69.6890870197241,34.9840823992475,61.1083738046295,68.0939358098579,72.7954349695705,79.3822381139003,71.7609206795725,174.117093551724,95.7149548655919,97.6899431536649,88.4681807890882,18.1747011530633,18.8866955660872,0,0.702012795417713,0.743155811443641,72.1750521698183,92.2221883811739,74.2901509550105,43.8836761243957,44.7576265311501,52.1400443664687,0,0,2.28060927094849,0.432359860250884,2.27236380167484,62.2279364063257,128.73009941314,146.521809012559,111.197089914758,124.524093663725,115.03139115422,113.187267321709,111.458297839289,118.145178653819,105.0204252956,178.136424314218,125.179756048159,100.591027554164,190.411691474767,123.768849924526,75.3617606588076,52.484178848613,83.9229863900713,215.467836442828,115.578401948377,127.602252201019,91.8576039708333,189.423908679777,100.577887862545,105.202342593796,128.986951872844,137.962727831239,0,0,0,149.525909826748,101.07850353402,162.606071746419,123.643235894113,83.4233869554557,127.670466790046,0,0.985153801009636,0.431255149719035,0.256686072559497,61.4908990618361,31.2335649258292,23.9719531961086,24.4573747388149,15.9484687913291,0,2.99161459204025,0,87.1109591205893,78.5267718063693,79.7519169677223,236.046927837466,181.462281606714,232.137954929952,299.999163796339,193.207396025196,168.281553001429,103.473071292505,126.867089320268,142.88610561982,150.048002186379,74.4044398358414,76.5209835098209,0.620304078368662,0,0.106727557803444,43.3472427168151,78.2246565699336,84.9716724256402,234.461878388744,255.974571444488,217.230913091199,227.959546525892,264.040940518419,236.294410159959,154.354789102791,105.479430561016,133.171293984845,91.7360332674248,95.5428149697863,115.513116189199,21.2712631281255,61.3549799128052,43.0939028219995,179.914240273939,126.371270596662,166.921380243347,78.0575330329822,75.7060763736397,94.1219723012226,73.0696123266303,76.419379318442,75.06403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| |||
|short_description=p1@PARVA | |||
}} |
Latest revision as of 10:57, 16 September 2015
Short description: | p1@PARVA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PARVA_5end |
Coexpression cluster: | C3110_spindle_mesodermal_bone_Preadipocyte_basal_Sertoli_mesenchymal |
Association with transcript: | 0bp_to_ENST00000530755, ENST00000539723, ENST00000550549, uc001mkh.2, uc001mki.2_5end |
EntrezGene: | PARVA |
HGNC: | 14652 |
UniProt: | F5H1R9Q9NVD7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 3.94e-22 | 121 |
fibroblast | 1.55e-19 | 76 |
muscle precursor cell | 3.60e-17 | 58 |
myoblast | 3.60e-17 | 58 |
multi-potent skeletal muscle stem cell | 3.60e-17 | 58 |
muscle cell | 1.46e-16 | 55 |
embryonic cell | 1.45e-15 | 250 |
smooth muscle cell | 1.63e-14 | 43 |
smooth muscle myoblast | 1.63e-14 | 43 |
electrically responsive cell | 2.33e-13 | 61 |
electrically active cell | 2.33e-13 | 61 |
vascular associated smooth muscle cell | 1.60e-11 | 32 |
fat cell | 9.35e-10 | 15 |
skin fibroblast | 1.42e-07 | 23 |