FFCP PHASE1:Hg19::chr10:18948225..18948244,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-29bp_to_ENST00000444660,ENST00000456217_5end | |||
|cluster_id=chr10:18948225..18948244,- | |||
|description=CAGE_peak_3_at_ENST00000444660_5end,CAGE_peak_3_at_ENST00000456217_5end | |||
|id=chr10:18948225..18948244,- | |||
|ontology_enrichment_celltype=CL:0000542!1.99e-09!53;CL:0000051!1.99e-09!53;CL:0000838!2.07e-09!52;CL:0000791!4.55e-09!18;CL:0000789!4.55e-09!18;CL:0002420!4.55e-09!18;CL:0002419!4.55e-09!18;CL:0000790!4.55e-09!18 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.50e-21;18!CL:0000789;1.50e-21;18!CL:0002419;1.50e-21;18!CL:0000625;1.61e-15;11!CL:0000084;1.73e-14;25!CL:0000624;3.87e-09;6!CL:0000898;2.75e-07;3!CL:0000542;4.92e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.45e-22,18;CL:0000789,1.45e-22,18;CL:0002420,1.45e-22,18;CL:0002419,1.45e-22,18;CL:0000790,1.45e-22,18;CL:0000625,2.39e-16,11;CL:0000084,3.46e-15,25;CL:0000827,3.46e-15,25;CL:0000838,6.18e-11,52;CL:0000542,1.23e-10,53;CL:0000051,1.23e-10,53;CL:0000624,2.16e-09,6;CL:0000898,7.38e-08,3 | |||
|ontology_enrichment_development_v019=CL:0000790;1.50e-21;18!UBERON:0006241;9.85e-08;3!UBERON:0003057;9.85e-08;3!CL:0000051;4.92e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.73e-19!115;UBERON:0001049!2.29e-16!57;UBERON:0005068!2.29e-16!57;UBERON:0006241!2.29e-16!57;UBERON:0007135!2.29e-16!57;UBERON:0001017!7.15e-14!82;UBERON:0005743!2.16e-13!86;UBERON:0000073!3.33e-13!94;UBERON:0001016!3.33e-13!94;UBERON:0002780!4.27e-13!41;UBERON:0001890!4.27e-13!41;UBERON:0006240!4.27e-13!41;UBERON:0002346!1.56e-12!90;UBERON:0003080!2.06e-12!42;UBERON:0000955!6.42e-12!69;UBERON:0006238!6.42e-12!69;UBERON:0003075!8.31e-12!86;UBERON:0007284!8.31e-12!86;UBERON:0002616!1.05e-11!59;UBERON:0002020!1.18e-09!34;UBERON:0003528!1.18e-09!34;UBERON:0001893!2.84e-09!34;UBERON:0002791!4.81e-09!33;UBERON:0001869!2.20e-08!32;UBERON:0003056!3.06e-08!61;UBERON:0000924!2.61e-07!173;UBERON:0006601!2.61e-07!173;UBERON:0000153!3.42e-07!129;UBERON:0007811!3.42e-07!129;UBERON:0002619!3.90e-07!22;UBERON:0004121!8.92e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0001894;3.79e-12;7!UBERON:0003296;3.90e-10;4!UBERON:0010133;3.90e-10;4!UBERON:0002784;4.59e-10;4!UBERON:0002240;9.85e-08;3!UBERON:0005174;9.85e-08;3!UBERON:0001137;9.85e-08;3!UBERON:0002780;1.29e-07;41!UBERON:0001890;1.29e-07;41!UBERON:0000073;4.34e-07;53!UBERON:0002616;4.34e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,3.98e-15,56;UBERON:0005068,3.98e-15,56;UBERON:0006241,3.98e-15,56;UBERON:0007135,3.98e-15,56;UBERON:0001894,6.10e-12,7;UBERON:0006222,6.10e-12,7;UBERON:0002346,1.03e-11,86;UBERON:0000073,1.19e-11,53;UBERON:0002616,1.19e-11,53;UBERON:0003075,1.87e-11,82;UBERON:0007284,1.87e-11,82;UBERON:0001017,1.54e-10,81;UBERON:0002780,4.83e-10,41;UBERON:0001890,4.83e-10,41;UBERON:0003080,4.83e-10,41;UBERON:0006240,4.83e-10,41;UBERON:0002784,5.92e-10,4;UBERON:0003296,1.05e-09,4;UBERON:0010133,1.05e-09,4;UBERON:0001016,6.85e-09,89;UBERON:0010371,1.62e-08,104;UBERON:0002240,5.99e-08,3;UBERON:0005174,5.99e-08,3;UBERON:0001137,5.99e-08,3;UBERON:0000955,7.61e-08,68;UBERON:0006238,7.61e-08,68;UBERON:0007023,8.41e-07,114 | |||
|phase1_expression=0,0,0.281908808191942,0,0,0,0,0,0,0,0,0.218441372130172,0,0.123766352960047,0.331397375727916,0,0,0,0,0,0,0,0,0.273748850145768,0.251085279189606,0.305653622991805,0.164201178899891,0.629686250509434,0.786728553697808,0.383829398097213,0.464448369948228,0,0,0,1.00707360754392,0.284338464974843,0,0,0.200544447470142,0.217010870715852,0,0,0,0.436194716338694,0,0.242584061187816,0,0,0.619412741790207,0.28769239232215,0.768482119587302,0.236482229888585,0,0,0,0,0,0,0,0.320929027076094,0,0,0.199463657621632,0.426224750532694,0,0,0.622822248995575,0,0,0.217188844705117,0,0,0.316462387440884,0,0,0,0,0.150176892841506,0,0,0,0,0,1.63841583378639,0.889509253863555,0.426730222566507,0.800791974072025,0.574752439954483,0,0,0,1.17447437874188,0.764546456250458,1.32171328579026,1.12101712596307,0.790152254325231,1.180258620683,0.786021525498329,1.23360899399706,1.33749196312542,1.30368906653436,1.89379122293893,0,1.11410456885174,1.76763544484902,1.55073726208535,0.541607727530031,0.384273959177026,0.390178042679635,0.657751618414705,0.276350017785848,0.869409257205157,2.37258501059297,1.87278579662799,0,0.793165398882963,1.91610246800961,0.34362744548263,0.759059076058509,1.91139248594458,0,1.90090408889675,1.6563263098555,2.55973222308837,0,1.4206635122641,2.46338399076314,1.41124720257313,1.06976078313403,1.88271725047639,0,0,0,0,0,0,0,0.486634870302636,0.0945348171640679,0,0.087834785693126,0.327447688744282,0,0,0,0,0,0.715471872916026,1.14398982156026,1.85728750664782,0,0.860234595106124,0.694281003215189,0,0.419499436209906,0,0,0.516833518338658,1.06729878806013,1.00416183829401,0,0,0,0,0,0.17859945656816,0.22452937262617,0.112611480483322,0,0,0,0,0,0,0,0.12663051166458,0.132409180813219,0.286836620748814,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0.149448680551801,0,0,0.140450806702248,0,0.368502951935304,0.206651562351531,0,0,0,0,0.168336113954066,0.500474079487857,0,0,0,0,0,0.179389635688862,0.213557388818567,0,0,0,0.257640540045629,0,0.337552664482532,0.292311015483596,0.252433774244115,0.0920498986422993,0,0.355009592516614,0.503760491138201,0.339121184620975,0,0,0,0.121973706129595,0.132529768321485,0.348581828608555,0.10366105501537,0,0.72995471815166,0,0,0,1.39310378409594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32438929824395,0.122988438543114,0.343135620597051,0.109750285408626,0,0,0.185176890317059,0,0,0,1.15930404975077,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0.264145302039678,0,0.144119953416961,0.25248486685276,0.126995788584338,0,0,0,0,0,0,0,0,0.36669142910475,0,0,0,0,1.04007436911366,0,1.41849132023278,0,0,1.08524321078289,0,0.325736184293735,0,0.791951872933429,0.301439377059586,0,0,0,0,0,0,0,1.42636905040718,0,0,0.179060963239896,0.224170287987055,0.394061520403854,0.646882724578552,1.28343036279748,0.254094624222463,1.30139853857622,0,0.335032530668698,1.91381625495949,0,0,0,0,0,0,0.207970861530807,0.178428988797162,0.315404830067869,0,0,0,0,0,0,0,0.195801157462741,0,0.413536052245775,0.215714200818617,0.320182673410333,0,0,0,0.248107807818777,0,0.280660094433074,0.384417447767103,0,0,0,0,0.177561725313127,0,0,0,0.362578348774867,0,0,0.114814448164607,0,0.131124414959424,0,0.0770153371044148,0,1.46139224653261,0.105551628892876,0,0,0,0,0.270946437543853,0.501689773854853,0,0,0,0,0,0.256450125116389,0,0,0.721287081534056,0,0.082509499920588,0,0,0,0.193341436584244,0.308097234229289,0,0.137836572484531,0.214840489736547,0.435050081742686,0.255679882248303,0.0890320356467374,0,0,0.382838137483752,0,0,0.31481234683064,0,0,0,0,0.18532421910392,0.286249773483982,0,0,0,0,0,0,0.78494864019923,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,1.32687795048244,0,0,0,0.202910376962704,0,0,0,0,0,0,0,0,0,0.349934720244983,0.0962221127255121,0,0,0.659006605437454,0,0,0.443430153536676,0,0,0.764637207142375,1.13929437434833,0.476463550915578,0.822724546172388,0.648473311192717,2.70015718619057,0,0,0,0,0.185803175125719,1.298422916788,0.995985806877798,0,0.798317485731266,0,0.635020748171649,0,0.561594356226918,0,0.156679895773023,0,0.50787533340481,0.1605880751037,0.201799707191048,0.425846237690326,0,0,0.223676107892416,0,0,0.278406173895242,0,0.270455678475983,0.99921590399346,0,0,0.586032717087576,0.485442086998054,0.111443384277478,0,0,0,0,0,1.1253553312841,0.890469640183247,0,0,0.597743964753209,0.552567831062295,0.251932747854276,0.102268682502155,0,0,0,0,0,0.197286811273867,0,1.11136990144637,0.969332746095218,0.278304294485554,0,0.7812832832557,0.0874599999961957,0,0,0,0,0,0.291604613383254,0.520874984799877,0,0.844175070377856,1.52581736317083,1.87984741883082,0.886642856860642,0.219385397153973,0,0.139423744278603,0.384751292518985,0.113942055847001,0,0.0897576444097721,0.108647371922008,0.31900115973192,0,0.533034776018635,0,0.784901281975124,0.332423363800313,0.451191321234361,0.19606253431774,0,0.189753732724185,0,0,0,0.141353071433941,0,0,0.442287822516696,0.611030144933625,0,0,0,0.741412462787447,0,0.468528891450678,0.729819156862664,0.19566461893209,0,1.97292201424695,0,0.30607276163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| |||
|short_description=p3@ENST00000444660,p3@ENST00000456217 | |||
}} |
Latest revision as of 12:25, 23 July 2015
Short description: | p3@ENST00000444660, p3@ENST00000456217 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ENST00000444660_5end, CAGE_peak_3_at_ENST00000456217_5end |
Coexpression cluster: | NA |
Association with transcript: | -29bp_to_ENST00000444660, ENST00000456217_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.45e-22 | 18 |
alpha-beta T cell | 1.45e-22 | 18 |
immature T cell | 1.45e-22 | 18 |
mature T cell | 1.45e-22 | 18 |
immature alpha-beta T cell | 1.45e-22 | 18 |
CD8-positive, alpha-beta T cell | 2.39e-16 | 11 |
T cell | 3.46e-15 | 25 |
pro-T cell | 3.46e-15 | 25 |
lymphoid lineage restricted progenitor cell | 6.18e-11 | 52 |
lymphocyte | 1.23e-10 | 53 |
common lymphoid progenitor | 1.23e-10 | 53 |
CD4-positive, alpha-beta T cell | 2.16e-09 | 6 |
naive T cell | 7.38e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
neural tube | 3.98e-15 | 56 |
neural rod | 3.98e-15 | 56 |
future spinal cord | 3.98e-15 | 56 |
neural keel | 3.98e-15 | 56 |
diencephalon | 6.10e-12 | 7 |
future diencephalon | 6.10e-12 | 7 |
neurectoderm | 1.03e-11 | 86 |
regional part of nervous system | 1.19e-11 | 53 |
regional part of brain | 1.19e-11 | 53 |
neural plate | 1.87e-11 | 82 |
presumptive neural plate | 1.87e-11 | 82 |
central nervous system | 1.54e-10 | 81 |
regional part of forebrain | 4.83e-10 | 41 |
forebrain | 4.83e-10 | 41 |
anterior neural tube | 4.83e-10 | 41 |
future forebrain | 4.83e-10 | 41 |
regional part of diencephalon | 5.92e-10 | 4 |
gland of diencephalon | 1.05e-09 | 4 |
neuroendocrine gland | 1.05e-09 | 4 |
nervous system | 6.85e-09 | 89 |
ecto-epithelium | 1.62e-08 | 104 |
spinal cord | 5.99e-08 | 3 |
dorsal region element | 5.99e-08 | 3 |
dorsum | 5.99e-08 | 3 |
brain | 7.61e-08 | 68 |
future brain | 7.61e-08 | 68 |
adult organism | 8.41e-07 | 114 |