FFCP PHASE1:Hg19::chr7:39663286..39663317,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr7:39663286..39663317,+
|short_description=p2@RALA
|description=CAGE_peak_2_at_RALA_5end
|association_with_transcript=122bp_to_ENST00000468201_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5898 | |EntrezGene=5898 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9839 | |HGNC=9839 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=122bp_to_ENST00000468201_5end | |||
|cluster_id=chr7:39663286..39663317,+ | |||
|coexpression_cluster_id=C2895 | |||
|description=CAGE_peak_2_at_RALA_5end | |||
|id=chr7:39663286..39663317,+ | |||
|ontology_enrichment_celltype=CL:0000222!5.24e-20!119;CL:0002371!2.71e-17!591;CL:0000055!1.22e-16!180;CL:0000048!2.91e-15!430;CL:0000144!4.17e-15!625;CL:0000723!4.39e-15!436;CL:0000057!1.27e-14!75;CL:0000034!6.31e-14!444;CL:0002139!5.50e-13!24;CL:0000115!3.01e-12!35;CL:0000680!1.51e-11!57;CL:0000056!1.51e-11!57;CL:0000355!1.51e-11!57;CL:0000012!5.10e-11!682;CL:0000359!5.20e-11!32;CL:0000548!6.03e-11!679;CL:0000004!6.03e-11!679;CL:0000255!6.03e-11!679;CL:0000187!7.56e-11!54;CL:0000071!2.18e-10!18;CL:0002546!2.18e-10!18;CL:0000213!4.42e-10!57;CL:0000215!4.42e-10!57;CL:0000192!5.24e-10!42;CL:0000514!5.24e-10!42;CL:0002078!8.63e-10!44;CL:0000220!1.22e-09!246;CL:0000183!2.06e-09!59;CL:0002057!3.64e-09!42;CL:0002321!4.03e-09!248;CL:0000393!4.48e-09!60;CL:0000211!4.48e-09!60;CL:0000860!2.10e-07!45;CL:0002494!2.24e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0002139;5.42e-13;24!CL:0000860;1.91e-12;33!CL:0002057;1.91e-12;33!CL:0000115;6.03e-11;36!CL:0000473;7.56e-11;39!CL:0000234;7.56e-11;39!CL:0000359;1.40e-10;32!CL:0000071;2.12e-10;18!CL:0000192;6.42e-08;43!CL:0002494;2.31e-07;16!CL:0002078;5.75e-07;45 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,1.31e-20,121;CL:0000048,3.88e-16,427;CL:0000723,5.97e-16,433;CL:0000057,6.37e-15,76;CL:0000034,9.29e-15,441;CL:0002139,5.50e-13,24;CL:0000115,1.72e-12,36;CL:0000680,7.33e-12,58;CL:0000056,7.33e-12,58;CL:0000355,7.33e-12,58;CL:0000187,3.69e-11,55;CL:0000359,5.20e-11,32;CL:0000071,2.18e-10,18;CL:0002546,2.18e-10,18;CL:0000192,2.53e-10,43;CL:0000514,2.53e-10,43;CL:0000213,2.54e-10,58;CL:0000215,2.54e-10,58;CL:0002078,4.91e-10,45;CL:0000473,5.79e-10,48;CL:0000234,5.79e-10,48;CL:0002321,1.64e-09,250;CL:0000393,2.30e-09,61;CL:0000211,2.30e-09,61;CL:0000860,3.64e-09,42;CL:0002057,3.64e-09,42;CL:0002494,2.24e-07,16;CL:0002009,4.58e-07,61 | |||
|ontology_enrichment_development_v019=CL:0002546;2.12e-10;18!CL:0000514;6.42e-08;43!CL:0002057;2.50e-07;42 | |||
|ontology_enrichment_disease=DOID:2394!9.91e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;9.12e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,9.91e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0000055!1.00e-21!69;UBERON:0001981!2.40e-20!60;UBERON:0007500!2.40e-20!60;UBERON:0004537!2.40e-20!60;UBERON:0006965!2.40e-20!60;UBERON:0004872!2.47e-20!84;UBERON:0002049!2.74e-20!79;UBERON:0007798!2.74e-20!79;UBERON:0001637!2.33e-18!42;UBERON:0003509!2.33e-18!42;UBERON:0004572!2.33e-18!42;UBERON:0002204!1.97e-15!167;UBERON:0004573!1.78e-14!33;UBERON:0004571!1.78e-14!33;UBERON:0004535!1.86e-14!110;UBERON:0000914!2.29e-14!83;UBERON:0002329!2.29e-14!83;UBERON:0003077!2.29e-14!83;UBERON:0003059!2.29e-14!83;UBERON:0007282!2.29e-14!83;UBERON:0009618!2.29e-14!83;UBERON:0007285!2.29e-14!83;UBERON:0001009!3.20e-13!113;UBERON:0000926!3.33e-12!448;UBERON:0004120!3.33e-12!448;UBERON:0006603!3.33e-12!448;UBERON:0004290!3.89e-12!70;UBERON:0000486!1.58e-11!82;UBERON:0000467!1.92e-11!625;UBERON:0003914!2.54e-11!118;UBERON:0000480!3.34e-11!626;UBERON:0003081!3.60e-11!216;UBERON:0000947!5.22e-11!21;UBERON:0010191!5.22e-11!21;UBERON:0001134!1.11e-10!61;UBERON:0002036!1.11e-10!61;UBERON:0003082!1.11e-10!61;UBERON:0000468!2.10e-10!659;UBERON:0001986!2.18e-10!18;UBERON:0004638!2.18e-10!18;UBERON:0004852!2.18e-10!18;UBERON:0002385!2.33e-10!63;UBERON:0001015!2.33e-10!63;UBERON:0000383!2.33e-10!63;UBERON:0000487!5.99e-09!22;UBERON:0000490!1.14e-08!138;UBERON:0006914!3.77e-08!25;UBERON:0002050!2.39e-07!605;UBERON:0005423!2.39e-07!605;UBERON:0000923!3.27e-07!604;UBERON:0005291!3.27e-07!604;UBERON:0006598!3.27e-07!604;UBERON:0002532!3.27e-07!604;UBERON:0005256!4.67e-07!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;1.13e-13;42!UBERON:0003509;1.13e-13;42!UBERON:0004572;1.13e-13;42!UBERON:0004573;2.69e-13;33!UBERON:0004571;2.69e-13;33!UBERON:0007500;1.48e-12;56!UBERON:0001981;1.48e-12;56!UBERON:0004537;1.48e-12;56!UBERON:0000055;1.86e-11;65!UBERON:0000947;5.92e-11;21!UBERON:0010191;5.92e-11;21!UBERON:0004638;2.12e-10;18!UBERON:0001986;2.12e-10;18!UBERON:0004852;2.12e-10;18!UBERON:0002049;6.01e-09;75!UBERON:0007798;6.01e-09;75!UBERON:0000487;6.10e-09;22!UBERON:0006914;3.61e-08;25!UBERON:0003914;4.14e-07;74 | |||
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| ||
|short_description=p2@RALA | |||
}} | }} |
Latest revision as of 13:25, 18 September 2015
Short description: | p2@RALA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RALA_5end |
Coexpression cluster: | C2895_immature_Mallassezderived_mesenchymal_CD14_Fibroblast_migratory_Endothelial |
Association with transcript: | 122bp_to_ENST00000468201_5end |
EntrezGene: | RALA |
HGNC: | 9839 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 1.31e-20 | 121 |
multi fate stem cell | 3.88e-16 | 427 |
somatic stem cell | 5.97e-16 | 433 |
fibroblast | 6.37e-15 | 76 |
stem cell | 9.29e-15 | 441 |
endothelial cell of vascular tree | 5.50e-13 | 24 |
endothelial cell | 1.72e-12 | 36 |
muscle precursor cell | 7.33e-12 | 58 |
myoblast | 7.33e-12 | 58 |
multi-potent skeletal muscle stem cell | 7.33e-12 | 58 |
muscle cell | 3.69e-11 | 55 |
vascular associated smooth muscle cell | 5.20e-11 | 32 |
blood vessel endothelial cell | 2.18e-10 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.18e-10 | 18 |
smooth muscle cell | 2.53e-10 | 43 |
smooth muscle myoblast | 2.53e-10 | 43 |
lining cell | 2.54e-10 | 58 |
barrier cell | 2.54e-10 | 58 |
meso-epithelial cell | 4.91e-10 | 45 |
defensive cell | 5.79e-10 | 48 |
phagocyte | 5.79e-10 | 48 |
embryonic cell | 1.64e-09 | 250 |
electrically responsive cell | 2.30e-09 | 61 |
electrically active cell | 2.30e-09 | 61 |
classical monocyte | 3.64e-09 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.64e-09 | 42 |
cardiocyte | 2.24e-07 | 16 |
macrophage dendritic cell progenitor | 4.58e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 9.91e-08 | 14 |