FFCP PHASE1:Hg19::chr6:31545417..31545428,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr6:31545417..31545428,+
|short_description=p6@TNF
|description=CAGE_peak_6_at_TNF_5end
|association_with_transcript=-377bp_to_AJ227911_5end
|EntrezGene=7124
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7124 | |EntrezGene=7124 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11892 | |HGNC=11892 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-377bp_to_AJ227911_5end | |||
|cluster_id=chr6:31545417..31545428,+ | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_6_at_TNF_5end | |||
|id=chr6:31545417..31545428,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.14e-51!42;CL:0000738!8.93e-48!140;CL:0000860!1.19e-47!45;CL:0002087!1.30e-46!119;CL:0002031!2.74e-42!124;CL:0000988!1.12e-41!182;CL:0002009!7.94e-40!65;CL:0000037!9.41e-40!172;CL:0000566!9.41e-40!172;CL:0002194!1.39e-38!63;CL:0000576!1.39e-38!63;CL:0000040!1.39e-38!63;CL:0000559!1.39e-38!63;CL:0000557!4.40e-38!71;CL:0000766!1.88e-37!76;CL:0002032!9.82e-37!165;CL:0000837!9.82e-37!165;CL:0000839!3.46e-36!70;CL:0000763!2.79e-27!112;CL:0000049!2.79e-27!112;CL:0000134!2.57e-14!358;CL:0002320!9.04e-14!365;CL:0000219!7.53e-12!390;CL:0000080!7.84e-11!6;CL:0000048!3.07e-10!430;CL:0000723!6.65e-10!436;CL:0000034!1.80e-09!444;CL:0000542!9.82e-09!53;CL:0000051!9.82e-09!53;CL:0000623!2.37e-08!3;CL:0000825!2.37e-08!3;CL:0000838!9.09e-08!52 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.90e-74;33!CL:0002057;3.90e-74;33!CL:0000473;1.86e-62;39!CL:0000234;1.86e-62;39!CL:0000576;2.88e-32;48!CL:0000766;5.27e-25;69!CL:0000763;1.22e-15;100!CL:0002087;1.46e-12;104!CL:0000738;7.70e-08;136!CL:0000235;4.37e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.13e-68,48;CL:0000234,1.13e-68,48;CL:0000860,4.99e-63,42;CL:0002057,4.99e-63,42;CL:0002194,1.95e-54,59;CL:0000576,1.95e-54,59;CL:0000040,1.95e-54,59;CL:0000559,1.95e-54,59;CL:0002009,1.34e-52,61;CL:0000766,2.84e-49,72;CL:0000839,1.75e-48,66;CL:0000557,9.86e-48,67;CL:0000763,4.00e-32,108;CL:0000049,4.00e-32,108;CL:0002087,5.69e-30,115;CL:0002031,1.28e-28,120;CL:0000738,9.17e-28,136;CL:0002032,4.74e-23,161;CL:0000837,4.74e-23,161;CL:0000037,5.58e-22,168;CL:0000988,1.00e-20,177;CL:0000134,6.59e-09,354;CL:0002320,1.13e-08,361;CL:0000219,7.44e-08,386;CL:0000235,4.44e-07,6;CL:0000048,7.57e-07,427 | |||
|ontology_enrichment_development_v019=CL:0002057;6.55e-45;42!CL:0000049;1.01e-10;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.17e-36!102;UBERON:0003061!2.17e-36!102;UBERON:0002371!8.98e-33!80;UBERON:0002193!3.56e-32!112;UBERON:0001474!7.54e-30!86;UBERON:0004765!4.65e-24!101;UBERON:0001434!4.65e-24!101;UBERON:0002405!6.14e-23!115;UBERON:0003081!2.11e-13!216;UBERON:0002384!5.02e-13!375;UBERON:0002204!5.32e-12!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,7.49e-42,76;UBERON:0001474,1.23e-38,82;UBERON:0004765,5.20e-35,90;UBERON:0002405,8.28e-34,93;UBERON:0002390,5.75e-32,98;UBERON:0003061,5.75e-32,98;UBERON:0001434,2.79e-31,100;UBERON:0002193,8.66e-29,108;UBERON:0002204,1.04e-17,167;UBERON:0003081,4.40e-14,203;UBERON:0002384,2.34e-08,371;UBERON:0000926,4.86e-08,315;UBERON:0004120,4.86e-08,315;UBERON:0006603,4.86e-08,315 | |||
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| ||
|short_description=p6@TNF | |||
}} | }} |
Latest revision as of 21:44, 17 September 2015
Short description: | p6@TNF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_TNF_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | -377bp_to_AJ227911_5end |
EntrezGene: | TNF |
HGNC: | 11892 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.13e-68 | 48 |
phagocyte | 1.13e-68 | 48 |
classical monocyte | 4.99e-63 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.99e-63 | 42 |
monopoietic cell | 1.95e-54 | 59 |
monocyte | 1.95e-54 | 59 |
monoblast | 1.95e-54 | 59 |
promonocyte | 1.95e-54 | 59 |
macrophage dendritic cell progenitor | 1.34e-52 | 61 |
myeloid leukocyte | 2.84e-49 | 72 |
myeloid lineage restricted progenitor cell | 1.75e-48 | 66 |
granulocyte monocyte progenitor cell | 9.86e-48 | 67 |
myeloid cell | 4.00e-32 | 108 |
common myeloid progenitor | 4.00e-32 | 108 |
nongranular leukocyte | 5.69e-30 | 115 |
hematopoietic lineage restricted progenitor cell | 1.28e-28 | 120 |
leukocyte | 9.17e-28 | 136 |
hematopoietic oligopotent progenitor cell | 4.74e-23 | 161 |
hematopoietic multipotent progenitor cell | 4.74e-23 | 161 |
hematopoietic stem cell | 5.58e-22 | 168 |
hematopoietic cell | 1.00e-20 | 177 |
mesenchymal cell | 6.59e-09 | 354 |
connective tissue cell | 1.13e-08 | 361 |
motile cell | 7.44e-08 | 386 |
macrophage | 4.44e-07 | 6 |
multi fate stem cell | 7.57e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 7.49e-42 | 76 |
bone element | 1.23e-38 | 82 |
skeletal element | 5.20e-35 | 90 |
immune system | 8.28e-34 | 93 |
hematopoietic system | 5.75e-32 | 98 |
blood island | 5.75e-32 | 98 |
skeletal system | 2.79e-31 | 100 |
hemolymphoid system | 8.66e-29 | 108 |
musculoskeletal system | 1.04e-17 | 167 |
lateral plate mesoderm | 4.40e-14 | 203 |
connective tissue | 2.34e-08 | 371 |
mesoderm | 4.86e-08 | 315 |
mesoderm-derived structure | 4.86e-08 | 315 |
presumptive mesoderm | 4.86e-08 | 315 |