FFCP PHASE1:Hg19::chr6:31545312..31545327,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr6:31545312..31545327,+
|short_description=p3@TNF
|description=CAGE_peak_3_at_TNF_5end
|association_with_transcript=-478bp_to_AJ227911_5end
|EntrezGene=7124
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7124 | |EntrezGene=7124 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11892 | |HGNC=11892 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-478bp_to_AJ227911_5end | |||
|cluster_id=chr6:31545312..31545327,+ | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_3_at_TNF_5end | |||
|id=chr6:31545312..31545327,+ | |||
|ontology_enrichment_celltype=CL:0002057!4.20e-66!42;CL:0000860!6.83e-61!45;CL:0002031!3.06e-52!124;CL:0000738!1.27e-51!140;CL:0002087!7.05e-51!119;CL:0002009!3.27e-50!65;CL:0000557!9.58e-50!71;CL:0002194!1.61e-46!63;CL:0000576!1.61e-46!63;CL:0000040!1.61e-46!63;CL:0000559!1.61e-46!63;CL:0000839!2.62e-45!70;CL:0000766!4.34e-45!76;CL:0000037!1.42e-41!172;CL:0000566!1.42e-41!172;CL:0002032!8.69e-41!165;CL:0000837!8.69e-41!165;CL:0000988!1.02e-39!182;CL:0000763!8.79e-33!112;CL:0000049!8.79e-33!112;CL:0000134!1.88e-13!358;CL:0002320!7.49e-13!365;CL:0002393!4.28e-11!9;CL:0002397!4.28e-11!9;CL:0000219!9.41e-11!390;CL:0000048!8.32e-09!430;CL:0000723!1.89e-08!436;CL:0000838!4.99e-08!52;CL:0000034!5.44e-08!444;CL:0000542!8.48e-08!53;CL:0000051!8.48e-08!53 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.75e-86;33!CL:0002057;1.75e-86;33!CL:0000473;1.56e-66;39!CL:0000234;1.56e-66;39!CL:0000576;8.02e-38;48!CL:0000766;4.26e-22;69!CL:0001014;1.28e-15;2!CL:0001016;1.28e-15;2!CL:0002087;7.32e-15;104!CL:0000763;5.89e-13;100!CL:0000738;1.89e-09;136!CL:0000219;4.65e-07;193!CL:0000453;9.05e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.18e-74,42;CL:0002057,1.18e-74,42;CL:0000473,2.37e-71,48;CL:0000234,2.37e-71,48;CL:0002009,3.73e-65,61;CL:0000557,4.57e-59,67;CL:0002194,2.42e-56,59;CL:0000576,2.42e-56,59;CL:0000040,2.42e-56,59;CL:0000559,2.42e-56,59;CL:0000839,4.58e-50,66;CL:0000766,1.22e-45,72;CL:0002031,1.98e-37,120;CL:0000763,2.25e-35,108;CL:0000049,2.25e-35,108;CL:0002087,5.86e-33,115;CL:0000738,1.39e-32,136;CL:0002032,6.39e-27,161;CL:0000837,6.39e-27,161;CL:0000037,1.24e-25,168;CL:0000988,3.97e-24,177;CL:0001014,1.33e-15,2;CL:0001016,1.33e-15,2;CL:0000134,6.02e-10,354;CL:0002320,1.14e-09,361;CL:0000219,1.10e-08,386;CL:0000048,1.76e-07,427;CL:0000723,2.59e-07,433;CL:0000034,4.26e-07,441;CL:0000453,9.18e-07,5 | |||
|ontology_enrichment_development_v019=CL:0002057;1.94e-53;42!CL:0000049;1.60e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060060;1.71e-08;1!DOID:0060061;1.71e-08;1!DOID:8691;1.71e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,1.53e-08,1;DOID:0060061,1.53e-08,1;DOID:8691,1.53e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0002371!1.07e-42!80;UBERON:0001474!8.12e-39!86;UBERON:0002390!1.37e-37!102;UBERON:0003061!1.37e-37!102;UBERON:0002193!1.55e-34!112;UBERON:0004765!1.04e-32!101;UBERON:0001434!1.04e-32!101;UBERON:0002405!1.73e-28!115;UBERON:0002204!1.10e-15!167;UBERON:0003081!3.71e-12!216;UBERON:0002384!4.90e-12!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.04e-51,76;UBERON:0001474,1.09e-47,82;UBERON:0004765,3.74e-43,90;UBERON:0002405,1.19e-41,93;UBERON:0002390,2.39e-39,98;UBERON:0003061,2.39e-39,98;UBERON:0001434,1.72e-38,100;UBERON:0002193,2.25e-35,108;UBERON:0002204,1.57e-21,167;UBERON:0003081,5.29e-17,203;UBERON:0000926,1.80e-09,315;UBERON:0004120,1.80e-09,315;UBERON:0006603,1.80e-09,315;UBERON:0002384,2.74e-09,371 | |||
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| ||
|short_description=p3@TNF | |||
}} | }} |
Latest revision as of 21:40, 17 September 2015
Short description: | p3@TNF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TNF_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | -478bp_to_AJ227911_5end |
EntrezGene: | TNF |
HGNC: | 11892 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.04e-51 | 76 |
bone element | 1.09e-47 | 82 |
skeletal element | 3.74e-43 | 90 |
immune system | 1.19e-41 | 93 |
hematopoietic system | 2.39e-39 | 98 |
blood island | 2.39e-39 | 98 |
skeletal system | 1.72e-38 | 100 |
hemolymphoid system | 2.25e-35 | 108 |
musculoskeletal system | 1.57e-21 | 167 |
lateral plate mesoderm | 5.29e-17 | 203 |
mesoderm | 1.80e-09 | 315 |
mesoderm-derived structure | 1.80e-09 | 315 |
presumptive mesoderm | 1.80e-09 | 315 |
connective tissue | 2.74e-09 | 371 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 1.53e-08 | 1 |
cutaneous T cell lymphoma | 1.53e-08 | 1 |
mycosis fungoides | 1.53e-08 | 1 |