FFCP PHASE1:Hg19::chr6:21597514..21597578,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:21597514..21597578,+
|short_description=p4@SOX4
|description=CAGE_peak_4_at_SOX4_5end
|association_with_transcript=-82bp_to_AJ420500_5end
|EntrezGene=6659...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6659 | |EntrezGene=6659 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11200 | |HGNC=11200 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-82bp_to_AJ420500_5end | |||
|cluster_id=chr6:21597514..21597578,+ | |||
|coexpression_cluster_id=C1086 | |||
|description=CAGE_peak_4_at_SOX4_5end | |||
|id=chr6:21597514..21597578,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.88e-19!254;CL:0002321!1.61e-07!248;CL:0000220!3.79e-07!246 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.18e-17,253 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!2.30e-16!235;DOID:14566!5.11e-16!239;DOID:0050687!7.81e-11!143;DOID:0050686!1.38e-09!137;DOID:305!2.33e-09!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,3.31e-15,235;DOID:14566,5.96e-15,239;DOID:0050686,1.69e-09,137;DOID:0050687,1.72e-09,143;DOID:305,6.78e-08,106 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p4@SOX4 | |||
}} | }} |
Latest revision as of 03:55, 17 September 2015
Short description: | p4@SOX4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SOX4_5end |
Coexpression cluster: | C1086_occipital_parietal_temporal_duodenum_small_Neurons_transitionalcell |
Association with transcript: | -82bp_to_AJ420500_5end |
EntrezGene: | SOX4 |
HGNC: | 11200 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.18e-17 | 253 |
Ontology term | p-value | n |
---|---|---|
cancer | 3.31e-15 | 235 |
disease of cellular proliferation | 5.96e-15 | 239 |
organ system cancer | 1.69e-09 | 137 |
cell type cancer | 1.72e-09 | 143 |
carcinoma | 6.78e-08 | 106 |