FFCP PHASE1:Hg19::chr6:160113775..160113808,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:160113775..160113808,-
|short_description=p11@SOD2
|description=CAGE_peak_11_at_SOD2_5end
|association_with_transcript=-93bp_to_ENST00000540491_5end
|Entr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6648 | |EntrezGene=6648 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11180 | |HGNC=11180 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-93bp_to_ENST00000540491_5end | |||
|cluster_id=chr6:160113775..160113808,- | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_11_at_SOD2_5end | |||
|id=chr6:160113775..160113808,- | |||
|ontology_enrichment_celltype=CL:0002057!2.93e-23!42;CL:0000860!6.78e-22!45;CL:0002194!2.71e-20!63;CL:0000576!2.71e-20!63;CL:0000040!2.71e-20!63;CL:0000559!2.71e-20!63;CL:0000766!4.44e-20!76;CL:0002009!1.17e-19!65;CL:0000839!3.64e-17!70;CL:0000557!1.30e-15!71;CL:0000763!3.01e-11!112;CL:0000049!3.01e-11!112;CL:0002087!1.88e-07!119;CL:0000738!2.03e-07!140 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.26e-39;33!CL:0002057;4.26e-39;33!CL:0000473;5.87e-34;39!CL:0000234;5.87e-34;39!CL:0000576;3.63e-23;48!CL:0000766;6.79e-17;69!CL:0000763;5.45e-08;100!CL:0000094;1.99e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.61e-43,48;CL:0000234,1.61e-43,48;CL:0000860,6.32e-41,42;CL:0002057,6.32e-41,42;CL:0000766,4.22e-36,72;CL:0002194,9.88e-34,59;CL:0000576,9.88e-34,59;CL:0000040,9.88e-34,59;CL:0000559,9.88e-34,59;CL:0002009,3.35e-32,61;CL:0000839,8.68e-29,66;CL:0000557,3.63e-28,67;CL:0000763,3.19e-19,108;CL:0000049,3.19e-19,108;CL:0000738,1.48e-15,136;CL:0002087,1.56e-14,115;CL:0002031,7.12e-12,120;CL:0000037,5.42e-10,168;CL:0002032,8.92e-10,161;CL:0000837,8.92e-10,161;CL:0000988,7.74e-09,177;CL:0000094,2.10e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;1.09e-30;42!CL:0000049;1.59e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.26e-15!112;UBERON:0002390!1.71e-15!102;UBERON:0003061!1.71e-15!102;UBERON:0002371!3.14e-13!80;UBERON:0002204!2.33e-12!167;UBERON:0007023!1.39e-11!115;UBERON:0002405!2.52e-11!115;UBERON:0001474!4.75e-11!86;UBERON:0004765!1.00e-09!101;UBERON:0001434!1.00e-09!101 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.03e-09;15!UBERON:0000179;1.03e-09;15!UBERON:0000463;1.03e-09;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,6.73e-30,108;UBERON:0002390,2.20e-28,98;UBERON:0003061,2.20e-28,98;UBERON:0002371,2.49e-23,76;UBERON:0002405,8.36e-22,93;UBERON:0001474,1.04e-20,82;UBERON:0001434,6.24e-19,100;UBERON:0004765,9.25e-19,90;UBERON:0002204,4.72e-18,167;UBERON:0003081,7.42e-18,203;UBERON:0000926,1.95e-13,315;UBERON:0004120,1.95e-13,315;UBERON:0006603,1.95e-13,315;UBERON:0000178,8.09e-10,15;UBERON:0000179,8.09e-10,15;UBERON:0000463,8.09e-10,15 | |||
|phase1_expression=0.181678379270557,0.642301571672949,0.422863212287913,1.0007329835313,0.893922188854576,0,2.53299878168311,0.631719873426831,0.522371256399677,0,0,0,0,0.37129905888014,0.331397375727916,2.6893005858071,1.80808358407193,2.92124036154949,3.41552959153355,0,0,0,0.286235987131057,0.136874425072884,0.125542639594803,0.152826811495903,0,0.157421562627358,0.393364276848904,1.15148819429164,0.154816123316076,0,0,0,0.232401601740905,0,0,7.20194031091441,6.61796676651468,6.72733699219141,0.447830948479849,0.32389366601898,1.03030227053675,3.19876125315042,4.1566353805769,2.42584061187816,25.3347650227196,12.7462045286766,8.6717783850629,32.7969327247252,22.0298207615027,14.6618982530923,42.7484644113407,20.6555098746824,41.9822108442459,12.4239944098119,5.45812300115692,5.39336362668203,52.6464294877952,26.6371092473158,40.9175760511386,16.1627137091491,10.7710375115681,11.5080682643827,64.1362417369171,39.1495805036886,43.5975574296902,19.597395890026,14.0800387973454,8.90474263290978,62.356148771237,30.9353214229554,38.291948880347,0.845021145247767,1.06302149982522,0.419317291016752,0.336985893439485,0.300353785683013,0.964353520182481,0.285012743741249,0.39783335439818,0,0,0,0,0,0.400395987036012,0,0,0,1.70763890732835,0.587237189370939,0,0,2.24203425192614,0,0,0.786021525498329,1.02800749499755,0.167186495390678,0,0,0,0,0.589211814949674,0,0.270803863765016,0.128091319725675,0,0.164437904603676,0,0,0.14828656316206,0,1.04535523804977,0,0,0.68725489096526,0.253019692019503,0,0,0,0.150575119077773,0,0,0,0,0.403213486449465,0,0.434473211648397,2.43806866313962,0.670700859703636,0,0,0.50133791063589,1.15877215168659,1.5905718941022,6.32625331393427,0,0,0.087834785693126,0.0654895377488563,0,0,0,0,0.531831842075461,0.476981248610684,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0.33472061276467,0,0.760272105718513,0.488124115096339,0,0,0,0,0,0,0,0,11.8602375692457,27.1446184903828,0,0.496971951695318,0,1.58891016975863,0,0,0,0,0,0,0.942974704487816,0.163461903113459,0.302714855289863,0,0,0.312160076830321,0,0.896692083310806,0.23486899728753,0.323745888736263,0,0,0.245668634623536,0.309977343527296,0,1.7308685049499,0,0,0,0,0,0,0,2.40380894250555,0,0.179389635688862,0,0,0,0.103052529238439,0,0,0,0.0974370051611986,0,0.0920498986422993,0.161646056818812,0,0,0,0.193260853163297,0.272746120590835,0.286804595389004,0.121973706129595,0,0,0.207322110030741,0,0,4.69348596989448,0,0,1.39310378409594,0.721879481669586,0.236613600079688,0.168584690078102,0.241011029883482,0.661763836394364,0.217879444092406,0,0.269662616320329,0.784885860501384,0,0,0,0,0,3.80265104465493,5.89696330006576,1.18157981336281,0.882926198829301,0.122988438543114,0,0,0,0,0.0925884451585296,0,0,0,0.115930404975077,0,6.0633908059651,14.8155364024515,11.7957574385451,0,0,0.738651018262192,0.468008530278475,2.22946743433092,0,0,0.283550194484773,0.53735113621709,0.290633938513962,0.383382679165211,0,0,0,0,0,0.126995788584338,0,0,0,0.102827492703324,0.300343057843917,0,0,0,0,0.517086863031111,0,0,0,1.04007436911366,0,0,0,0,0,0,0.325736184293735,0,0,0.301439377059586,0.871533458600294,1.3996218765488,1.2162378064119,5.52482800575339,10.5416969741516,0,0,0,1.01346914667305,1.2328579353023,0.716243852959582,0.224170287987055,0,0,0.385029108839245,0,0,0,0.167516265334349,0,8.98808428736619,23.932916736322,16.5766205374414,0.12269149171914,1.00034104211935,0.271265023699736,0.623912584592421,1.78428988797162,0.473107245101804,0.117141414992713,0.902838299183157,0,0,0,0,0.260650843404249,0,0,0.82707210449155,1.2942852049117,1.60091336705167,0,0,0,0,0,0,0.128139149255701,0,0.160853921143607,0,0.154209693802656,0.532685175939381,0.0821271560138091,0,0.116210378459959,0.120859449591622,0.200506470303285,0,0,0.182091168006717,0.917870904715969,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0.223874754722178,0.657779629937804,0.522870902049801,0.256450125116389,0,0.650756789328606,0.721287081534056,0,0,0,0.650060246036521,0,0.580024309752732,1.07834031980251,0.15350367472613,0.827019434907183,0.107420244868274,0.145016693914229,0.511359764496605,0,0,0,0,0.6069466851333,0.464845549297286,0,0.6970372701606,0.308033580176089,0.532306030317022,0,0,0.858749320451947,0,0,0.190630193923825,0,0,0.318203247925937,2.35484592059769,0.719489830333259,0,0.117812402345686,0,0,1.26377536871694,0,3.41198885483798,1.05650146756755,0,0.848432591722276,0,0,0.66343897524122,4.38450885253763,0.578775534266688,0.655894752046633,0,0.92947049429925,0,0,0.0982490410131212,0.35667105148125,0.709522128141196,4.85547561184627,3.62224382255892,0,0,0,0,0,0.564862804660675,0,0,0.443430153536676,0,5.58192370155386,3.0585488285695,5.69647187174163,1.19115887728894,1.64544909234478,1.29694662238543,2.16012574895246,4.75875105776562,0.320472213382419,0,0.245040215981032,0,0.144269212976445,0.0711418433484141,0,0.199579371432817,0.383010740264733,0,0,0.280797178113459,0,0,0,0.169291777801603,0.321176150207399,0,0.425846237690326,0.343505344755765,0,0,0,0,0,0,0.540911356951966,0,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| ||
|short_description=p11@SOD2 | |||
}} | }} |
Latest revision as of 14:43, 16 September 2015
Short description: | p11@SOD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_SOD2_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | -93bp_to_ENST00000540491_5end |
EntrezGene: | SOD2 |
HGNC: | 11180 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.61e-43 | 48 |
phagocyte | 1.61e-43 | 48 |
classical monocyte | 6.32e-41 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.32e-41 | 42 |
myeloid leukocyte | 4.22e-36 | 72 |
monopoietic cell | 9.88e-34 | 59 |
monocyte | 9.88e-34 | 59 |
monoblast | 9.88e-34 | 59 |
promonocyte | 9.88e-34 | 59 |
macrophage dendritic cell progenitor | 3.35e-32 | 61 |
myeloid lineage restricted progenitor cell | 8.68e-29 | 66 |
granulocyte monocyte progenitor cell | 3.63e-28 | 67 |
myeloid cell | 3.19e-19 | 108 |
common myeloid progenitor | 3.19e-19 | 108 |
leukocyte | 1.48e-15 | 136 |
nongranular leukocyte | 1.56e-14 | 115 |
hematopoietic lineage restricted progenitor cell | 7.12e-12 | 120 |
hematopoietic stem cell | 5.42e-10 | 168 |
hematopoietic oligopotent progenitor cell | 8.92e-10 | 161 |
hematopoietic multipotent progenitor cell | 8.92e-10 | 161 |
hematopoietic cell | 7.74e-09 | 177 |
granulocyte | 2.10e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 6.73e-30 | 108 |
hematopoietic system | 2.20e-28 | 98 |
blood island | 2.20e-28 | 98 |
bone marrow | 2.49e-23 | 76 |
immune system | 8.36e-22 | 93 |
bone element | 1.04e-20 | 82 |
skeletal system | 6.24e-19 | 100 |
skeletal element | 9.25e-19 | 90 |
musculoskeletal system | 4.72e-18 | 167 |
lateral plate mesoderm | 7.42e-18 | 203 |
mesoderm | 1.95e-13 | 315 |
mesoderm-derived structure | 1.95e-13 | 315 |
presumptive mesoderm | 1.95e-13 | 315 |
blood | 8.09e-10 | 15 |
haemolymphatic fluid | 8.09e-10 | 15 |
organism substance | 8.09e-10 | 15 |