Personal tools

NonredundantMotifs:77: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{Known_motif |entrez_gene_id=5978 |motif_cluster_2013_march_motif_members= /SWISSREGULON:REST.p3 /HOMER:REST_Jurkat-NRSF-ChIP-Seq /JASPAR:MA0138.2;REST /HOCOMOCO:REST_f...")
 
m (Autoedit moved page NonredundantMotifs:Motif77 to NonredundantMotifs:77 without leaving a redirect: NSchange)
 
(6 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;1682.6341852907099;1215.250506032494;3264.0348894672666;2330.5573469500728!2;1204.438562725072;260.5102595804774;5992.599692688221;1034.9284127473732!3;785.5690371237677;1738.17861758549;5043.2750750412615;925.4541979903299!4;2461.843929943416;3900.1762945378323;214.22717803407187;1916.229525225198!5;1088.9716395557482;1027.116725876913;5304.596633746136;1071.791928562129!6;151.59377747060148;7790.526543295917;276.72720556195367;273.62940141326214!7;149.0440698433637;146.08037484166672;69.28537182254826;8128.067111234196!8;340.6748315898464;1157.1793177912934;6847.93605627366;146.68672208662102!9;298.3970523970728;279.91863875256524;658.6156204792892;7255.545616112633!10;51.4319662265188;8152.387767412032;59.74176623938015;228.91542786387902!11;50.2334001057845;8120.498533691147;50.244588587372334;271.5004053574906!12;4180.914781918158;786.4455124114459;2286.3047974079464;1238.8118360030232!13;1679.2214753719236;1158.107955875621;1037.660866213782;4617.486630279428!14;374.65703427832557;140.86450261189952;7818.402899455532;158.55249139593838!15;86.72079123740112;155.89630121356805;8202.74584779785;47.113987492991384!16;102.53852696973894;98.21827686155525;86.41166831726962;8205.308455593227!17;771.9776690544152;1349.1437676970502;5695.255755224778;676.0997357648076!18;63.89335725303503;8069.1270670054755;186.74588758187545;172.71061590137805!19;170.32506175801834;427.5771306370153;172.86708263519117;7721.707652711475!20;528.393558406054;250.4298733431216;7349.822488356454;363.83100763598287!21;5996.293735640785;838.1151115281431;1392.692760569634;265.37532000261245!22;4667.796515011459;1886.8145816235872;832.7392656220069;1105.1265654837478
|entrez_gene_id=5978
|entrez_gene_id=5978
|motif_cluster_2013_march_motif_members= /SWISSREGULON:REST.p3 /HOMER:REST_Jurkat-NRSF-ChIP-Seq /JASPAR:MA0138.2;REST /HOCOMOCO:REST_f1
|motif_cluster_2013_march_motif_members= /HOCOMOCO:REST_f1 /HOMER:REST_Jurkat-NRSF-ChIP-Seq /JASPAR:MA0138.2;REST /SWISSREGULON:REST.p3
|name=known77
|name=non-redundant77
|representative_motif_db=HOCOMOCO
|representative_motif_db=HOCOMOCO
|representative_motif_id=REST_f1
|representative_motif_id=REST_f1
Line 11: Line 12:
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Latest revision as of 10:21, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant77
  • db :HOCOMOCO
  • Id :REST_f1
  • name  :
  • score :0.18383761007160448
  • External refs:
EntrezGene:5978
UniProt:5978

  • Internal refs:
EntrezGene:5978


Motif matrix
P0ACGT
11682.63418529070991215.2505060324943264.03488946726662330.5573469500728
21204.438562725072260.51025958047745992.5996926882211034.9284127473732
3785.56903712376771738.178617585495043.2750750412615925.4541979903299
42461.8439299434163900.1762945378323214.227178034071871916.229525225198
51088.97163955574821027.1167258769135304.5966337461361071.791928562129
6151.593777470601487790.526543295917276.72720556195367273.62940141326214
7149.0440698433637146.0803748416667269.285371822548268128.067111234196
8340.67483158984641157.17931779129346847.93605627366146.68672208662102
9298.3970523970728279.91863875256524658.61562047928927255.545616112633
1051.43196622651888152.38776741203259.74176623938015228.91542786387902
1150.23340010578458120.49853369114750.244588587372334271.5004053574906
124180.914781918158786.44551241144592286.30479740794641238.8118360030232
131679.22147537192361158.1079558756211037.6608662137824617.486630279428
14374.65703427832557140.864502611899527818.402899455532158.55249139593838
1586.72079123740112155.896301213568058202.7458477978547.113987492991384
16102.5385269697389498.2182768615552586.411668317269628205.308455593227
17771.97766905441521349.14376769705025695.255755224778676.0997357648076
1863.893357253035038069.1270670054755186.74588758187545172.71061590137805
19170.32506175801834427.5771306370153172.867082635191177721.707652711475
20528.393558406054250.42987334312167349.822488356454363.83100763598287
215996.293735640785838.11511152814311392.692760569634265.37532000261245
224667.7965150114591886.8145816235872832.73926562200691105.1265654837478

Sub Motif Members

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=NonredundantMotifs:77&oldid=2579342"