FFCP PHASE1:Hg19::chr4:89282612..89282616,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr4:89282612..89282616,+
|short_description=p@chr4:89282612..89282616,+
|description=CAGE_peak_at_chr4:89282612..89282616,+
|association_with_transcript=NA
|E...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr4:89282612..89282616,+ | |||
|coexpression_cluster_id=C3774 | |||
|description=CAGE_peak_at_chr4:89282612..89282616,+ | |||
|id=chr4:89282612..89282616,+ | |||
|ontology_enrichment_celltype=CL:0002076!2.72e-08!43;CL:0000076!4.55e-08!62;CL:0000066!2.34e-07!254;CL:0000223!5.77e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000082;2.12e-12;19!CL:0002149;2.64e-10;6!CL:0002255;2.64e-10;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000082,2.05e-12,19;CL:0002149,2.52e-10,6;CL:0002255,2.52e-10,6 | |||
|ontology_enrichment_development_v019=UBERON:0008947;3.29e-08;29!UBERON:0001041;6.07e-08;30 | |||
|ontology_enrichment_disease=DOID:1749!1.27e-28!14;DOID:305!3.66e-15!106;DOID:0050687!2.31e-11!143;DOID:3908!1.21e-10!5;DOID:3905!4.84e-10!9;DOID:14566!5.56e-09!239;DOID:4556!2.16e-08!3;DOID:0060084!7.14e-08!3;DOID:127!7.14e-08!3;DOID:162!1.77e-07!235 | |||
|ontology_enrichment_disease_v019=DOID:3908;1.18e-26;5!DOID:3905;8.67e-26;9!DOID:4556;3.01e-20;3!DOID:1749;1.59e-16;14!DOID:1324;1.26e-15;15!DOID:3151;2.38e-15;1!DOID:3149;2.38e-15;1!DOID:0050615;1.14e-14;16!DOID:3001;2.64e-10;6!DOID:1325;4.04e-09;7!DOID:3904;4.04e-09;7!DOID:3910;1.29e-08;2!DOID:3451;2.48e-08;2!DOID:4159;2.48e-08;2!DOID:0060122;2.48e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3908,1.18e-26,5;DOID:3905,8.14e-26,9;DOID:4556,3.01e-20,3;DOID:1749,1.53e-16,14;DOID:1324,1.22e-15,15;DOID:3151,3.66e-15,1;DOID:3149,3.66e-15,1;DOID:0050615,1.10e-14,16;DOID:3001,2.52e-10,6;DOID:305,5.64e-10,106;DOID:1325,3.88e-09,7;DOID:3904,3.88e-09,7;DOID:3910,1.29e-08,2;DOID:3451,3.08e-08,2;DOID:4159,3.08e-08,2;DOID:0060122,3.08e-08,2;DOID:0050687,3.81e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0003343!4.39e-12!4;UBERON:0004785!4.39e-12!4;UBERON:0003729!9.15e-10!5;UBERON:0002046!1.48e-09!5;UBERON:0004117!1.48e-09!5;UBERON:0007689!1.48e-09!5;UBERON:0007123!1.48e-09!5;UBERON:0003091!1.48e-09!5;UBERON:0000344!7.13e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0004802;2.12e-12;19!UBERON:0000115;2.12e-12;19!UBERON:0002048;9.53e-11;22!UBERON:0004807;9.53e-11;22!UBERON:0000117;9.53e-11;22!UBERON:0000171;9.53e-11;22!UBERON:0000170;9.53e-11;22!UBERON:0004903;1.29e-08;2!UBERON:0002173;1.29e-08;2!UBERON:0002186;1.29e-08;2!UBERON:0000473;4.26e-08;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004802,2.05e-12,19;UBERON:0000115,2.05e-12,19;UBERON:0002048,9.29e-11,22;UBERON:0000117,9.29e-11,22;UBERON:0000171,9.29e-11,22;UBERON:0000170,9.29e-11,22;UBERON:0005597,9.29e-11,22;UBERON:0000118,9.29e-11,22;UBERON:0004903,1.29e-08,2;UBERON:0002173,1.29e-08,2;UBERON:0002186,1.29e-08,2;UBERON:0004807,1.67e-08,28;UBERON:0000473,4.19e-08,8;UBERON:0005178,4.87e-07,34;UBERON:0002224,4.87e-07,34;UBERON:0005181,7.65e-07,35 | |||
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|short_description=p@chr4:89282612..89282616,+ | |||
}} | }} |
Latest revision as of 07:55, 30 July 2015
Short description: | p@chr4:89282612..89282616, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:89282612..89282616, + |
Coexpression cluster: | C3774_mesothelioma_bronchioalveolar_adult_embryonic_testis_large_serous |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of lung | 2.05e-12 | 19 |
epithelial cell of uterus | 2.52e-10 | 6 |
stromal cell of endometrium | 2.52e-10 | 6 |
Ontology term | p-value | n |
---|---|---|
respiratory tract epithelium | 2.05e-12 | 19 |
lung epithelium | 2.05e-12 | 19 |
lung | 9.29e-11 | 22 |
respiratory tube | 9.29e-11 | 22 |
respiration organ | 9.29e-11 | 22 |
pair of lungs | 9.29e-11 | 22 |
lung primordium | 9.29e-11 | 22 |
lung bud | 9.29e-11 | 22 |
bronchoalveolar duct junction | 1.29e-08 | 2 |
alveolar duct | 1.29e-08 | 2 |
bronchiole | 1.29e-08 | 2 |
respiratory system epithelium | 1.67e-08 | 28 |
testis | 4.19e-08 | 8 |
thoracic cavity element | 4.87e-07 | 34 |
thoracic cavity | 4.87e-07 | 34 |
thoracic segment organ | 7.65e-07 | 35 |
Ontology term | p-value | n |
---|---|---|
non-small cell lung carcinoma | 1.18e-26 | 5 |
lung carcinoma | 8.14e-26 | 9 |
lung large cell carcinoma | 3.01e-20 | 3 |
squamous cell carcinoma | 1.53e-16 | 14 |
lung cancer | 1.22e-15 | 15 |
skin squamous cell carcinoma | 3.66e-15 | 1 |
keratoacanthoma | 3.66e-15 | 1 |
respiratory system cancer | 1.10e-14 | 16 |
female reproductive endometrioid cancer | 2.52e-10 | 6 |
carcinoma | 5.64e-10 | 106 |
bronchus cancer | 3.88e-09 | 7 |
bronchogenic carcinoma | 3.88e-09 | 7 |
lung adenocarcinoma | 1.29e-08 | 2 |
skin carcinoma | 3.08e-08 | 2 |
skin cancer | 3.08e-08 | 2 |
integumentary system cancer | 3.08e-08 | 2 |
cell type cancer | 3.81e-07 | 143 |